BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G09990.1

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487822 jgi|Araly1|487822|fgenesh2_kg.6__956__AT5G09990.1          518    2e-146


> Ahg487822 jgi|Araly1|487822|fgenesh2_kg.6__956__AT5G09990.1
Length=378

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 341/370 (92%), Gaps = 5/370 (1%)
 Strand=Plus/Plus

Query  33   GAGGA-ACTTAGAAGATAGCGAAGATGCAGCAAGAGAGAGATCACAAAAGAGATTGTTGC  91
            ||||| | ||| ||||||| || ||||||||||||| ||||| |||||||||||||||||
Sbjct  13   GAGGAGA-TTATAAGATAGAGATGATGCAGCAAGAGGGAGATAACAAAAGAGATTGTTGC  71

Query  92   AAGCTCATGCCTCAAACTGTCAAGGCTTTCTTCAAGTGTCTGAGATTCAGACGttcttct  151
            ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||   ||| 
Sbjct  72   AAGCTCATGCCTCAAACGGTCAAGGGTTTTTTCAAGTGTCTGAGATTCAGACG---TTCA  128

Query  152  tcttcttcttcAGACATGGTGAAAGCTAGAGCAAGAAATGAAGAGAAAGAAGAACCTTCA  211
            |||||||||||||||||||||||| ||| |||||||||||| |||||||||||| |||||
Sbjct  129  TCTTCTTCTTCAGACATGGTGAAATCTAAAGCAAGAAATGAGGAGAAAGAAGAAGCTTCA  188

Query  212  TCTATCGAAACTTCAACTAGGAGTCTCAACGTAATGAGGAAAGGGATAAGGAAACAACCA  271
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  189  TCTATCGAAACTTCAACGAGGAGTCTCAACGTAATGAGGAAAGGGATAAGGAAACAACCG  248

Query  272  GTTAGCTCGGGAAAACGAGGTGGAGTTAACGACTACGACATGTAACTAGAATCTTGATGT  331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  249  GTTAGCTCGGGAAAACGAGGTGGAGTTAACGACTACGACATGTAACTAGAATCTTGATGT  308

Query  332  AGAATTGGATAATCTTGTTTGGTAGTTACTCTACAACATACTTTCTTTGCATCTCATGAA  391
            |||||||||||||||||||| ||||| |||||| || | |||| ||||||  ||||||||
Sbjct  309  AGAATTGGATAATCTTGTTTAGTAGTCACTCTAAAAGAAACTTGCTTTGCGCCTCATGAA  368

Query  392  TCATCATGAT  401
            |||||| |||
Sbjct  369  TCATCACGAT  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14956990888


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5