BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G09995.2
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487824 jgi|Araly1|487824|fgenesh2_kg.6__958__AT5G09995.3 1358 0.0
> Ahg487824 jgi|Araly1|487824|fgenesh2_kg.6__958__AT5G09995.3
Length=963
Score = 1358 bits (735), Expect = 0.0
Identities = 887/958 (93%), Gaps = 19/958 (2%)
Strand=Plus/Plus
Query 13 CATTGTTATCGTCGACTCGAAGCTTAACAATGGTTTCTGACGAATAGAGCTAAAACCATT 72
||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1 CATTGTTATCGTCGACTCGGAGCTTAACAATGGCTTCTGACGACTAGAGCTAAAACCATT 60
Query 73 CACAATGTTATTCTCGCCTTCGAAATTGCAATCACCCCAATCTCTAATC-TCTTGGAATC 131
||||||||| ||||| || ||||| || ||||||||| || || ||||| || ||||||
Sbjct 61 CACAATGTTGTTCTCACCCTCGAATTTACAATCACCCGAACCTATAATCTTC-AGGAATC 119
Query 132 CGATTCTCCATAACGGATTCATCGATAAAAATCTCTCCTTTCGCCGACGGGTCACTCTCC 191
||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 120 CGATTCTCCATTACGGATTCATCGATAAAAATCTTTCCTTTCGCCGACGGGACACTCTCC 179
Query 192 GGCTAGCTTCACCGATTTCACGATTGACCAAGGGTTCAGACTCAATCGCATCTTCTACTC 251
||||||||| |||||||||||||| || |||||||||||||||||||| ||| || |||
Sbjct 180 GGCTAGCTTTTCCGATTTCACGATTCACAAAGGGTTCAGACTCAATCGCGTCTACTTCTC 239
Query 252 CCTCTGCATTGTACTCGAATCCTCAGGAGCCATCGATCTCTTCCCAATTAACATCGTCCG 311
||||| |||||||||||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct 240 CCTCTCCATTGTACTCGAATCCGCAGGAGCCATCGATATCTTCCCAATTCACGTCGTCCG 299
Query 312 TGGGACAGCCTCCTCTCCAACTCTCTCAATGGACATTCACACAGAAGCACTTCGTCTTGC 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGGACAGCCTCCTCTCCAACTCTCTCAATGGACATTCACACAGAAGCACTTCGTCTTGC 359
Query 372 TCAATGTCGTCGCTTGCGTGACAGCAATTTCAGCATCGTGGCTCTTCTTTGCTGCGATTC 431
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCAATGTCGTCGCTTGCGTAACAGCAATTTCAGCATCGTGGCTCTTCTTTGCTGCGATTC 419
Query 432 CTACTCTTCTGGCTTTCAAGAAAGCAGCTGAGTCTCTTGAAAAGCTTTTGGATGTAACTA 491
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 CTACTCTTCTGGCTTTCAAGAAAGCAGCTGAGTCTCTTGAAAAGCTTTTGGATGTAACCA 479
Query 492 GAGAAGAGCTACCAGATACAATGGCTGCTGTTCGTTTATCGGGAATGGAGATCAGTGACT 551
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 GAGAAGAGCTACCAGATACAATGGCCGCTGTTCGTTTATCGGGAATGGAGATCAGTGACT 539
Query 552 TAACTATGGAGCTCAGTGATTTAGGCCAAGGTATCACTCAAGGTGTTAAAAGCTCGACAC 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 540 TAACTATGGAGCTCAGTGATTTAGGCCAAGGTATCACTCAAGGTGTTAAAAGCTCAACAC 599
Query 612 GGGCTATTCGTGTAGCTGAAGATAGACTAAGACGGTTAACAAACATGAATCCAGTAGCTT 671
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 GGGCTATTCGCGTAGCTGAAGATAGACTAAGACGGTTAACAAACACGAATCCAGTAGCTT 659
Query 672 CAATGCAGGAGGTGATGCGTCAAACCAAGACAGATGAAA-CAGAACCAATGTTGGCTAAA 730
|||||||||||||||||| || |||||||||||| |||| ||||||||||| ||||||||
Sbjct 660 CAATGCAGGAGGTGATGCATCGAACCAAGACAGA-GAAAACAGAACCAATGGTGGCTAAA 718
Query 731 CAAGCGAGGAGCTTTAGAG-AAGGTGTT-GTTAAGGGACGCTCTTTATGGCAATTGTTCT 788
||||||||||||| | || |||| | | ||||| ||||| || |||||||||||||| |
Sbjct 719 AAAGCGAGGAGCTTAA-AGGAAGG-GATAGTTAAAGGACGTTCGTTATGGCAATTGTTGT 776
Query 789 CCACAATCACTCGTTTCTCTAAAATCA-CTACAAGTTATCTTGCAAAGCGTGCTAAGCAG 847
||||| ||||||||||||| |||| | | |||||||||||||||||||| |||||||||
Sbjct 777 CCACAGTCACTCGTTTCTCCAAAA-CGGCAACAAGTTATCTTGCAAAGCGAGCTAAGCAG 835
Query 848 TAGAAGCCTAGAAGGTGATCAATCAGATGCCACTTTTCTCTTTACCCTTTTTC-AGAGTC 906
||||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||||
Sbjct 836 TAGAAGCATAGAAGGTGATCAATCAGATCCCACTTTTCTCTT-ACCCTTTTTTTAGAGTC 894
Query 907 CG---CT---T-GAGTCTTTCTAGCTTAAGAGTGTAATTTGATTGATTTGAAATTATG 957
|| || | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 895 CGAGTCTAGCTTGAGTCTTTCTAGCTTAAGAGTGTAATTTGATTGATATGAAATTATG 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35568681561
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5