BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10010.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487826 jgi|Araly1|487826|fgenesh2_kg.6__960__AT5G10010.1 2442 0.0
Ahg950175 jgi|Araly1|950175|scaffold_802062.1 268 8e-71
Ahg950350 jgi|Araly1|950350|scaffold_802237.1 132 1e-29
> Ahg487826 jgi|Araly1|487826|fgenesh2_kg.6__960__AT5G10010.1
Length=1684
Score = 2442 bits (1322), Expect = 0.0
Identities = 1579/1696 (93%), Gaps = 46/1696 (3%)
Strand=Plus/Plus
Query 18 aaaaagaaaagataaaataaaataaaaaac-aaaacccccaaatttgtgtctcctccgga 76
||||| |||||||||||||||| || |||| |||||||||||||||||||||||||| ||
Sbjct 27 AAAAAAAAAAGATAAAATAAAA-AATAAACAAAAACCCCCAAATTTGTGTCTCCTCC-GA 84
Query 77 aaaaaaattcgaaatTCCGGATCCACCGCCATCAATCCCTAGCTTTCTCTCTCTT-TCTC 135
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 85 AAAAAAATTCGAAATTCCGGATCCACCGCCATCAATCCCTAGCTTTCTCTCT-TTCTCTC 143
Query 136 TATCTTCGCCGGCGAAACCAGTAGGGTTGCTCAATTCGTTGGTAGAGTACTGTGGCAATG 195
||| ||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct 144 AATCCTCGCCGGCGAAGCCAGTAGGGTTTCTCAATTCGTTCTTAGAGTAGTGTGGCAATG 203
Query 196 AAGAAAGGAGCGAAGAGAAAGGGTGTTTCGAAAGCAGGTCGCAAAGCTGCTGTTGCGGAG 255
| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 204 AGGAAAGGAGCGAAGAGAAAGGGTGTTTCGAAAGCTGGTCGCAAAGGTGCTGTTGCGGAG 263
Query 256 ACTCAGAACGATGAGGTGATAGAGGAGACGACGAAGACGACGCAGGAGGAGAGTCAACAG 315
||||||| ||||||||||||||| | || ||| |||||||||||||||||||||||||
Sbjct 264 ACTCAGACCGATGAGGTGATAGA-G-GA-GAC---GACGACGCAGGAGGAGAGTCAACAG 317
Query 316 CATGAGGAAGAAGTCGTCGACgaggtgaaggagaatggggaagaagaggaggctaaggga 375
| | |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 318 CCTAAGGAAGAAGTCGTCGACGAGAAGAAGGAGAATGGGGAAGAAGAGGAGGCCAAGGGA 377
Query 376 gatcaagaggaagaagaggaTGCGAAACCTGATTCCTT--AG-AGGAGGATGAGGAGAAT 432
||||||||||| |||||||| ||||||||||||||||| || ||||||| |||||||||
Sbjct 378 GATCAAGAGGACGAAGAGGAGGCGAAACCTGATTCCTTAGAGAAGGAGGAGGAGGAGAAT 437
Query 433 CAGGAAGATGAGGTCAAAGCTGAGGAAGTAAAGGAAGAAGTTGAGAAGAAACCTGTTGCT 492
|||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||
Sbjct 438 CAGGAAGATGAGGTCAAAGCCGACGAAGTAAAGGAAGAAGATGAGAAGAAACCTGTTGCT 497
Query 493 CGTCGTGGTGGTAAACGAAAGAGGGCTACGAAGAAGGATACTGAGATTAAAGATGAGAAG 552
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 498 CGTCGTGGTGGTAAACGAAAGAGGGCTACGAAGAAGGAAACTGAGGTTAAAGATGAGAAG 557
Query 553 AAACCTG-TTCCGAAAGCTAAGAAACCGAGAGCGGCCAAAGTTAAGGAAGAGCCTGTCTA 611
||||| | |||||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct 558 AAACC-GATTCCGAGTGTTAAGAAACCGAGAGTGGCCAAAGTTAAGGAAGAGCCTGTCTA 616
Query 612 CTTCGAGGAGAAGCGTAGTCTGGAGGATTTGTGGAAGGTTGCATTTCCAGTGGGAACTGA 671
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 CTTTGAGGAGAAGCGTAATCTGGAGGATTTGTGGAAGGTTGCATTTCCAGTGGGAACTGA 676
Query 672 GTGGGATCAATTAGATGCACTTTATGAATTCAATTGGGATTTCCAAAATCTTGAAGAAGC 731
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GTGGGATCAGTTAGATGCACTTTATGAATTCAATTGGGATTTCCAAAATCTTGAAGAAGC 736
Query 732 ATTGGAGGAAGGAGGAAAGCTCTATGGGAAGAAGGTTTATGTCTTTGGCTGTACAGAACC 791
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 737 ATTGGAGGAAGGAGGAAAGCTCTATGGGAAGAAGGTTTATGTTTTTGGCTGTACAGAACC 796
Query 792 TCAACTAGTCCCCTACAAAGGCGCAAACAAGATTGTCCATGTCCCAGCTGTTGTTGTTAT 851
|||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 797 TCAATTAGTACCCTACAAAGGTGCAAACAAGATTGTCCATGTCCCTGCTGTTGTTGTGAT 856
Query 852 TGAATCACCCTTTCCGCCTTCTGATAAGATAGGAATCACATCTGTTCAGAGAGAAGTGGA 911
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 857 TGAATCTCCTTTTCCGCCTTCTGATAAGATAGGGATCACATCTGTTCAGAGAGAAGTGGA 916
Query 912 GGAAATCATTCCAATGAAGAAGATGAAAATGGACTGGCTTCCATACATTCCGATTGAGAA 971
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 917 GGAAATCATTCCAATGAAGAAGATGAAAATGGATTGGCTTCCTTACATTCCGATTGAAAA 976
Query 972 AAGAGATAGACAAGTGGATAAGATGAATTCTCAAATTTTTACTTTGGGTTGTACGCAGAG 1031
||||||||||||||||||||||||||| || ||||||||||| |||| |||||| |||||
Sbjct 977 AAGAGATAGACAAGTGGATAAGATGAACTCCCAAATTTTTACCTTGGTTTGTACTCAGAG 1036
Query 1032 AAGATCTGCTCTCAGACATATGAAGGAAGATCAACTTAAGAAGTTTGAGTATTGCCTTCC 1091
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1037 GAGATCTGCTCTCAGACATATGAAGGAAGATCAACTTAAGAAATTTGAGTATTGCCTTCC 1096
Query 1092 TTATTTCTATCAACCCTTTAAGGAAGATGAACTTGAACAGAGTACTGAGGTCCAAATAAT 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TTATTTCTATCAACCCTTTAAGGAAGATGAACTTGAACAGAGTACTGAGGTCCAAATAAT 1156
Query 1152 GTTCCCCTCTGAACCCCCGGTTGTATGTGAATTTGACTGGGAGTTTGATGAACTTCAGGA 1211
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1157 GTTCCCCTCTGAACCCCCGGTTGTATGTGAATTTGACTGGGAGTTTGACGAACTTCAGGA 1216
Query 1212 ATTTGTCGATAAACTGGTTGAAGAGGAAGCATTACCTGCTGAACAAGCGGATGAATTCAA 1271
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1217 ATTTGTCGATAAACTGGTTGAAGAGGAAGCATTACCTGCTGAACAAACGGATGAATTCAA 1276
Query 1272 AGAATATGTCAAAGAGCAAGTTCGAGCAGCAAAGAAAGCAAATCGAGAGGCCAAAGATGC 1331
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1277 AGAATATGTCAAAGAGCAAGTTCGAGCAGCAAAGAAAGCAAATCGAGAAGCCAAAGATGC 1336
Query 1332 TCGAAAGAAAGCAATAGAAGAAATGAGCGAAGATACTAAGCAAGCCTTTCAAAAGATGAA 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 TCGAAAGAAAGCAATAGAAGAAATGAGCGAAGATACTAAGCAAGCCTTTCAAAAGATGAA 1396
Query 1392 GTTCTACAAATTCTACCCTCAGCCTTCACCAGATACACCAGACGTCTCTGGTGTCCAGTC 1451
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1397 GTTCTACAAATTCTACCCCCAGCCTTCACCAGATACACCAGACGTCTCAGGTGTCAAGTC 1456
Query 1452 CCCATTCATTAACCGATACTATGGAAAGGCTCATGAAGTCCTTTGAGATCAGATGATCAG 1511
||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1457 CCCGTTCATTAATCGATACTATGGAAAGGCTCATGAAGTCCTTTGAGATCAGAAGCTTT- 1515
Query 1512 ATGTTTGAGAAGCCAGAAAGCTTTTCTTGGAAGCTTCAGCAGAAATCAAAGTTATTTTTA 1571
| || | | | || ||| | | || || | || |||||||||||| |
Sbjct 1516 -TCTT-G-G---C-AG----CTT--C----A-GC---AG-A-AA-TCAAAGTTATTT--A 1549
Query 1572 ATCACAGGTGCTCTCAGAAACTCTTTGAGCTTTTATAGTTATTAAGCCAAGTTTGTAGGA 1631
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1550 ATCACAGGTGCTCTCAGAAACTCTTTGAGCTATTATAGTTATAAAGCCAAGTTTGTAGGA 1609
Query 1632 CAAAATGTCTTTTACTTTTATGAGTTTGTATTCTCCT-CGGGA-GTACTTGAGATCTTAG 1689
||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||||
Sbjct 1610 CAAAATGTCTTTTACTTTTATGAGTTTGTATTC-CCTTCCAAAAGTACTTGAGATCTTAG 1668
Query 1690 AAGAGTCACGGGAACC 1705
||||||| ||||||||
Sbjct 1669 AAGAGTCCCGGGAACC 1684
> Ahg950175 jgi|Araly1|950175|scaffold_802062.1
Length=765
Score = 268 bits (145), Expect = 8e-71
Identities = 249/296 (84%), Gaps = 20/296 (7%)
Strand=Plus/Plus
Query 1209 GGAATTTGTCGATAAACTGGTTGAAGAGGAAGCATTACCTGCTGAACAAGCGGATGAATT 1268
||||||||||||| ||| ||||||| ||||||||||||| ||||||| |||||||||
Sbjct 463 GGAATTTGTCGATGGTCTGATTGAAGATGAAGCATTACCTGTTGAACAAAAGGATGAATT 522
Query 1269 CAAAGAATAT-GTCAAAGAGCAAGTTCGAGCAGCAAAGAAAGCAAATC-GAGAGGCCAAA 1326
||| |||| | ||||||||||||||||||||||| |||||||| || | ||||||||||
Sbjct 523 CAACGAAT-TCGTCAAAGAGCAAGTTCGAGCAGCGAAGAAAGC-AAGCAAAGAGGCCAAA 580
Query 1327 GATGCTCGAAAGAAAGCAATAGAAGAAATGAGCGAAGATACTAAGCAAGCCTTTCAAAAG 1386
| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 581 GTTGCTCGAGAGAAAGCAATAGAAGAAATGAGCGAAGATACTAAGGAAGCCTTTGAAAAC 640
Query 1387 ATGAAGTTCTACAAATTCTACCCTCAGCCTTCACCAGA--TACACC-AGACGTCTCTGGT 1443
|||||| |||||||||||||||||| || ||||||||| | | || || || || |
Sbjct 641 ATGAAGATCTACAAATTCTACCCTCGGCATTCACCAGACGT-C-CCTAG--GT-TCAAGA 695
Query 1444 -GTCCAGTCCCCATTCATTAACCGATACTATGG-AAAGGCTCATGAAGTCCTTTGA 1497
||| ||| || |||||||| |||||| || |||| ||||| |||||||||||
Sbjct 696 CGTC--GTC---ATACATTAACCAATACTACGGGAAAG-CTCATCAAGTCCTTTGA 745
Score = 176 bits (95), Expect = 5e-43
Identities = 130/146 (89%), Gaps = 6/146 (4%)
Strand=Plus/Plus
Query 1029 GAGAAGATCTGCTCTCAGACATATGAAGGAAGATCAACT-TAAGAA-GTTTGAGTATTGC 1086
||| ||| ||||||||||||||||||||||||||| | ||| || ||||||||||||
Sbjct 322 GAGGAGAGCTGCTCTCAGACATATGAAGGAAGATC--GTGTAAAAATGTTTGAGTATTGT 379
Query 1087 CTTCCTTATTTCTATCAACCC-TTTAAGGAAGATGAACTTGAACAGAGTACTGAGGTCCA 1145
||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 380 CTTCCTTATTTCTAT-AACCCATTGAAGGAAGATGAACTTGAACAGAGTACTGAGGTCGA 438
Query 1146 AATAATGTTCCCCTCTGAACCCCCGG 1171
||| |||||||||||||||| ||||
Sbjct 439 CATATTGTTCCCCTCTGAACCGCCGG 464
> Ahg950350 jgi|Araly1|950350|scaffold_802237.1
Length=310
Score = 132 bits (71), Expect = 1e-29
Identities = 148/183 (81%), Gaps = 14/183 (8%)
Strand=Plus/Plus
Query 1319 AGGCCAA-AGATGCTCGAAAGAAAGCAATAGAAGAAATGAGCGAAGATACTAAGCAAGCC 1377
||| ||| |||| ||||| |||| |||||||||||||| ||||| |||||| |||||
Sbjct 118 AGG-CAAGAGATACTCGATTGAAAATGATAGAAGAAATGAGTGAAGAAACTAAGGAAGCC 176
Query 1378 TTTCAAAAGATGAAGTTCTACAAATTCTACCCTCAGCCTTCACCAGA--TACACC-AGAC 1434
|||||||| |||||||||||||||||||||||||||| ||||||||| | | || |||
Sbjct 177 TTTCAAAACATGAAGTTCTACAAATTCTACCCTCAGCTTTCACCAGACGT-C-CCTAGA- 233
Query 1435 GTCTCTGGTGTCCAGTCCCCATTCATTAACCGATACTATGGAAAGGCTCATGAAGTCCTT 1494
| || | | ||| || | |||||||||||||||||| || |||||| |||||||
Sbjct 234 -T-TCAAGA--C--GTCACCGTGCATTAACCGATACTATGGGAATGCTCATCAAGTCCTA 287
Query 1495 TGA 1497
|||
Sbjct 288 TGA 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5