BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G10020.1

Length=3693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487827 jgi|Araly1|487827|fgenesh2_kg.6__961__AT5G10020.1         5705    0.0  


> Ahg487827 jgi|Araly1|487827|fgenesh2_kg.6__961__AT5G10020.1
Length=3652

 Score = 5705 bits (3089),  Expect = 0.0
 Identities = 3492/3679 (95%), Gaps = 58/3679 (2%)
 Strand=Plus/Plus

Query  11    AAGAAAACTAATATAAAAATTCGA--tttttttttGGAAAACCTCAAA-A-ACACActct  66
             ||||||| ||||| ||||||||||  |||||||||||||||||||||| | |||| ||||
Sbjct  1     AAGAAAAATAATAAAAAAATTCGATTTTTTTTTTTGGAAAACCTCAAACACACACTCTCT  60

Query  67    -tctctctctcttcttcttcttcccctcttTCAAtttttttCAGATTCC--G-AGTACAA  122
              |||||||||||||||||||||||||||||||||   ||| ||||||||  | |||||||
Sbjct  61    CTCTCTCTCTCTTCTTCTTCTTCCCCTCTTTCAA---TTTCCAGATTCCGAGTAGTACAA  117

Query  123   TCCCTAAAtctccgtctctctgtttctctcttctctcaagtctcAGCTATGAATCCTTAC  182
             |||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||
Sbjct  118   TCCCTAAATCTCCGTCTCTCTGTTTCTCTCTTCTCTC---TCTTAGCTATGAATCCTTAC  174

Query  183   TAGGGTTTATTCTTTCTGTGT-TTCTCACTCTGCATTTGCTTCTGTGGAGTAGATAGATT  241
             |||||||| || | ||||||| |||||| | ||||||||||||||| | | || ||||||
Sbjct  175   TAGGGTTT-TT-TCTCTGTGTGTTCTCAGTTTGCATTTGCTTCTGT-G-G-AG-TAGATT  228

Query  242   CTTCAGGGCTAAATGAGTCATTTTCTCACTTTCTGCTTCCTCTCACTCCTTCTCCTCCTC  301
             ||||||||||||||||||||||||||||||||||||||| | ||||| |  |||||| | 
Sbjct  229   CTTCAGGGCTAAATGAGTCATTTTCTCACTTTCTGCTTCATTTCACT-C--CTCCTCAT-  284

Query  302   CACGGTGCCAACGCCGTCACCGAGACGGAGCTCCGATCTCTACTCGAGTTCCGTAAAGGG  361
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  285   --CGGTGCCAACGCCGTCACCGAGACGGAGCTCCGATCTCTACTCGAGTTCCGTAAAGGG  342

Query  362   ATCCGTGACGAGACCTCACACCAACGAATCTCATGGTCAGATACAAGCAGCCTCACTGAT  421
             ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  343   ATCCGAGACGAAACCTCACACCAACGAATCTCATGGTCCGATACAAGCAGCCTCACTGAT  402

Query  422   CCATCTACTTGCCCTAATGACTGGCCTGGTATCTCTTGCGACCCTGAAACCGGTTCAATC  481
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  403   CCATCTACTTGCCCTAATGACTGGCCTGGTATCTCTTGCGACCCTGAATCCGGTTCAATC  462

Query  482   ATCGCCATTAATCTCGACCGTCGTGGTCTCTCCGGCGAACTCAAATTCAGCACTCTCTCT  541
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  463   ATCGCCATTAATCTCGACCGTCGTGGTCTCTCCGGCGAACTCAAATTCAGCACTCTCTCT  522

Query  542   GGTCTTACTCGTCTTCGTAACCTCTCTTTATCCGGAAACAGCTTCTCGGGTCGGGTCGTT  601
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  523   GGTCTCACTCGTCTTCGTAACCTCTCTTTATCCGGAAACAGCTTCTCGGGTCGGGTCGTT  582

Query  602   CCTTCATTGGGTGGAATCTCGTCGCTTCAACACTTAGATCTGTCGGATAACGGTTTCTAC  661
             ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| 
Sbjct  583   CCTTCCTTGGGTGGAATTTCGTCGCTTCAACACTTAGATCTGTCAGATAATGGTTTCTAT  642

Query  662   GGACCTATACCGGGTCGGATCTCGGAGCTTTGGAGTTTGAATCATCTCAATTTGTCTTCC  721
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  643   GGACCTATCCCGGGTCGGATCTCGGAGCTTTGGAGTTTGAATCATCTCAATTTGTCTTCC  702

Query  722   AACAAGTTCGAAGGTGGGTTTCCTAGTGGCTTTCGGAATCTTCAGCAGCTAAGATCTTTG  781
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  703   AACAAGTTCGAAGGTGGGTTTCCTAGTGGGTTTCGGAATCTTCAGCAGCTAAGGTCTTTG  762

Query  782   GATTTGCATAAGAACGAGATTTGGGGAGATGTTGGTGAGATTTTCACTGAGCTTAAGAAT  841
             |||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct  763   GATTTGCACAAGAATGAGATTTGGGGAGATGTTGGCGAGATTTTCACTGAGCTGAAGAAT  822

Query  842   GTTGAGTTCGTTGATTTGAGCTGTAACCGTTTCAACGGTGGCTTATCTTTACCAATGGAG  901
             |||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| 
Sbjct  823   GTTGAGTTCGTTGATTTGAGCTGTAATCGTTTCCATGGTGGCTTATCTTTACCAATGGAA  882

Query  902   AACATTTCCAGCATTTCCAACACTCTCCGTCACTTGAATTTGAGCCACAATGCGTTAAAT  961
             |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  883   AACATTTCGAGCATTTCCAACACTCTCCGTCACTTGAATTTGAGCCACAATGCGTTGAAT  942

Query  962   GGCAAGTTTTTCAGTGAGGAGTCCATTGGTTCGTTCAAGAATCTCGAGATTGTTGACTTA  1021
             ||||| |||||||| |  |||||||||| |||||||||||||||||||||||||||||||
Sbjct  943   GGCAATTTTTTCAGCGCCGAGTCCATTGTTTCGTTCAAGAATCTCGAGATTGTTGACTTA  1002

Query  1022  GAGAATAACCAGATCAATGGTGAGTTACCGCATTTTGGATCACAGCCGAGTTTGAGAATA  1081
             ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| 
Sbjct  1003  GAGAATAACCAGATCAATGGTGACTTGCCGCATTTTGGATCACAGCCGAGTTTGAGAATC  1062

Query  1082  TTGAAGCTTGCTCGTAACGAGTTGTTCGGTTTAGTACCTCAAGAGTTGTTGCAGAGTTCG  1141
             |||||||| ||||||||| |||||||||||||||| ||| ||||||||||||||||||||
Sbjct  1063  TTGAAGCTCGCTCGTAACCAGTTGTTCGGTTTAGTGCCTGAAGAGTTGTTGCAGAGTTCG  1122

Query  1142  ATTCCTTTGCTAGAGCTAGATCTAAGTCGAAACGGTTTTACAGGATCAATTAGTGAAATC  1201
             ||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  1123  ATTCCATTGCTTGAGCTAGATCTCAGTCGAAATGGTTTTACAGGATCAATTAGTGAAATC  1182

Query  1202  AATTCATCAACGTTAACTATGTTGAATCTTTCTTCTAACGGCCTGTCTGGGGATCTTCCG  1261
             |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1183  AATTCAACAACGTTAACTATGTTGAATCTTTCTTCTAACGGCTTGTCTGGGGATCTTCCG  1242

Query  1262  TCGAGTTTTAAAAGTTGCTCAGTGATAGATTTGAGTGGGAATACTTTCTCTGGCGACGTG  1321
             |||| ||| |||||||||| |||||||||| |||||||||||||||||||||||||||| 
Sbjct  1243  TCGACTTTGAAAAGTTGCTTAGTGATAGATCTGAGTGGGAATACTTTCTCTGGCGACGTA  1302

Query  1322  TCTGTTGTTCAAAAGTGGGAAGCTACTCCAGATGTTCTTGATCTTAGCTCAAACAACTTG  1381
             ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  1303  TCTGTTGTTCAAAAGTGGGAAGCTACTCCTGATGTTCTTGATCTGAGCTCAAACAACTTG  1362

Query  1382  TCGGGAAGCTTGCCGAACTTTACTTCTGCATTTTCAAGATTAAGTGTGTTGAGCATTAGG  1441
             |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| 
Sbjct  1363  TCGGGAAGCTTGCCGAACTTCACTTCTGCTTTTTCAAGATTAAGTGTGTTGAGCATTAGA  1422

Query  1442  AATAATTCTGTCTCTGGTAGCTTGCCTTCTCTGTGGG--G--T-----GATTCTCAATTC  1492
             ||||| |||||||||||||||||||||||||||||||  |  |     | ||||||||||
Sbjct  1423  AATAACTCTGTCTCTGGTAGCTTGCCTTCTCTGTGGGATGATTCAGGGGTTTCTCAATTC  1482

Query  1493  TCTGTGATTGATCTCAGTTCAAATAAGTTCAGTGGCTTCATTCCAGTGAGTTTCTTCACT  1552
             |||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  1483  TCTGTGATTGATTTCAGTTCAAATAAGTTCAGTGGCTCCATTCCAGAGAGTTTCTTCACT  1542

Query  1553  TTTGCAAGCTTGAGAAGTTTGAATCTTTCTAGGAATAACTTGGAGGGGCCAATTCCTTTT  1612
             ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  1543  TTTGCAAGCTTGAAAAGTTTGAATCTTTCTATGAATAACTTGGAGGGGCCAATTCCTTTT  1602

Query  1613  CGAGGTTCACGTGCAAGCGAACTTTTGGTTCTAAATTCTTATCCGCAGATGGAGTTACTT  1672
             ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct  1603  CGAGGTTCACGTGCAAGCGAACTTTTGGTTCTAAGGTCTTATCCGCAGATGGAGTTACTT  1662

Query  1673  GACCTTTCAACCAATTCTTTGACGGGTATGCTGCCTGGGGATATAGGTACAATGGAAAAA  1732
             |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct  1663  GACCTTTCAACCAATTCTTTGACGGGTATGCTACCCGGAGATATAGGTACAATGGAAAAA  1722

Query  1733  ATTAAAGTGCTGAATCTTGCCAATAATAAGCTGTCCGGGGAACTTCCAAGCGACCTCAAC  1792
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1723  ATTAGAGTGCTGAATCTTGCCAATAATAAGCTGTCCGGGGAACTTCCAAGCGACCTCAAC  1782

Query  1793  AAGCTTAGTGGCCTTTTGTTCCTTGACTTGTCAAACAATACTTTCAAGGGTCAAATTCCC  1852
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1783  AAGCTTAGTGGCCTTTTGTTCCTTGACTTGTCTAACAATACTTTCAAGGGTCAAATTCCC  1842

Query  1853  AATAAGCTTCCTTCCCAAATGGTGGGATTCAATGTGTCGTATAACGACCTATCAGGCATA  1912
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1843  AATAAGCTTCCTTCCCAAATGGTGGGATTCAATGTGTCGTATAACGACCTATCAGGTATA  1902

Query  1913  ATTCCGGAAG-ACCTTAGAAGCTACCCGCCTTCTTCATTTTATCCTGGTAACTCCAAGCT  1971
             ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1903  ATTCCGG-AGAACCTTAGAAGCTACCCGCCTTCTTCATTTTATCCTGGTAACTCCAAGCT  1961

Query  1972  AAGTCTCCCAGGAC-GGATTCCAGCGGATTCTTCTGGTGATCTGTCTTTACCTGGGAAAA  2030
             |||||||||||| | |||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct  1962  AAGTCTCCCAGG-CGGGATTCCAGCGGATTCTTCTCGTGATATGTCTTTACCTGGG-AAA  2019

Query  2031  AAC-ATCATTCGAAGCTTAGCATAAGAATAGCGATTATTGTTGCTTCAGTTGGAGCTGCT  2089
             ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  2020  AACAATCATTCGAAGCTAAGCATAAGAATAGCGATTATTGTTGCTTCAGTTGGAGCTGCT  2079

Query  2090  ATTATGATTCTTTTTGTCTTGTTTGCCTATCATCGAACACAGCTCAAGGACTTTCACGGG  2149
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  2080  CTTATGATTCTTTTTGTCTTGTTTGCCTATCATCGAACACAGCTCAAGGACTTTCATGGG  2139

Query  2150  AGGAATAGATTTACAGACCAAGCAACGACTAGAGACACCAAGTTTGGACGCTCTTCTCGT  2209
             ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct  2140  AGGAATAGATTTACAGACCAAGCCACGACTAGAGACGCCAAGTTTGGACGCTCTTCTCGT  2199

Query  2210  CCCTCCTTATTCAACTTCAGCTCAAATGTTGAGCAGCAGTCATCATCTTTGAGCTTCTCA  2269
             |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct  2200  CCCTCCTTATTCAACTTCAGCTCAAATGCTGAGCAGCAATCATCATCTTTGAGCTTCTCA  2259

Query  2270  AACGATCACTTGCTCACCGCAAATTCAAGGTCGTTATCTGGGATACCCGGATGTGAAGCT  2329
             |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct  2260  AACGATCACTTGCTCACCGCGAATTCAAGGTCGTTATCCGGGATACCCGGATTTGAAGCT  2319

Query  2330  GAAATATCCGAGCAGGGTGCGCCTGCTACTTCTGCTCCTAC--A----AACCTCCTTGAT  2383
             |||||||||||||| |||| ||| | |||||| || |||||  |    ||||||||||||
Sbjct  2320  GAAATATCCGAGCATGGTGTGCCCGGTACTTCAGCCCCTACAAACCCTAACCTCCTTGAT  2379

Query  2384  GATTATCCTGCAGCATCTGGGCGCAAGTCTTCTTCAGGAGGCTCCCCACTATCCTCCTCA  2443
             |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  2380  GATTATCCTGCAGCATCTGGACGGAAGTCTTCTTCAGGAGGCTCCCCACTATCCTCCTCA  2439

Query  2444  CCCCGTTTTAGCGACCAGCCTGTGATGTTAGATGTTTACTCACCTGATAGATTGGCCGGA  2503
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  2440  CCCCGTTTTAGCGACCAGCCTGTGATGTTAGATGTTTACTCACCTGATCGATTGGCCGGA  2499

Query  2504  GAACTCTTCTTCTTAGACGTTTCACTAAAACTCACAGCAGAAGAGTTATCCCGAGCTCCT  2563
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2500  GAACTCTTCTTCTTAGACGTTTCACTAAAACTCACAGCAGAAGAGTTATCCCGAGCTCCT  2559

Query  2564  GCAGAAGTTCTAGGTAGAAGCAGCCATGGAACACTGTACAAAGCAACACTGGATAATGGA  2623
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2560  GCAGAAGTCCTAGGTAGAAGCAGCCATGGAACACTGTACAAAGCAACACTGGATAATGGA  2619

Query  2624  CACATGTTGACGGTGAAATGGTTGAGAGTTGGCCTCGTGAGGCATAAGAAAGATTTCGCA  2683
             |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  2620  CACATGTTGACGGTGAAATGGTTGAGAGTTGGACTCGTGAGGCATAAGAAAGATTTTGCA  2679

Query  2684  CGGGAAGCCaaaaaaaTCGGCTCTTTAAAACATCCTAACATTGTTCCGTTGCGAGCATAC  2743
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  2680  CGGGAAGCCAAAAAAATCGGCTCTTTAAAACATCCTAACATTGTCCCGTTGCGAGCATAC  2739

Query  2744  TATTGGGGTCCCAGAGAACAAGAAAGACTTCTCCTGTCTGATTACCTGAGAGGAGAGAGC  2803
             ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct  2740  TATTGGGGTCCCAGAGAACAAGAAAGACTACTCCTTTCTGATTACCTGAGAGGAGAAAGC  2799

Query  2804  TTAGCCATGCATCTTTACGAGACTACTCCTCGGAGGTATTCTCCAATGTCCTTCAGCCAA  2863
             || ||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct  2800  TTGGCCATGCATCTATACGAGACAACTCCTCGGAGGTACTCTCCAATGTCCTTCAGTCAA  2859

Query  2864  AGACTAAAAGTTGCAGTTGAAGTGGCTCAGTGTCTTCTCTACCTTCATGATAGAGCAATG  2923
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  2860  AGACTAAAAGTTGCAGTTGAAGTGGCTCAGTGTCTTCTCTATCTTCATGATAGAGCAATG  2919

Query  2924  CCACACGGGAACTTGAAGCCAACTAACATAATCCTCTCAAGTCCTGACAATACCGTGCGA  2983
             |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct  2920  CCACACGGGAACTTGAAGCCAACTAACATAATCCTCACAAGTCCCGACAATACCGTGCGA  2979

Query  2984  ATAACTGATTACTGTGTTCACCGTTTGATGACTCCATCTGGTGTAGCGGAACAGATACTA  3043
             ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  2980  ATAACCGATTACTGTGTTCACCGTCTGATGACTCCATCTGGTGTAGCGGAACAGATACTA  3039

Query  3044  AACATGAGTGCACTCGGTTACTCTGCTCCTGAACTTTCCTCGGCTTCCAAACCGATACCA  3103
             ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  3040  AACATGAGTGCACTCGGCTACTCTGCTCCTGAACTTTCCTCAGCTTCCAAACCGATACCA  3099

Query  3104  ACACTCAAATCCGATGTCTATGCGTTTGGTGTGATTCTCATGGAGCTTTTGACTAGACGG  3163
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3100  ACACTCAAATCCGATGTCTATGCGTTTGGTGTGATTCTCATGGAGCTTTTGACTAGACGG  3159

Query  3164  AGCGCAGGTGACATAATCTCAGGTCAAACAGGAGCCGTTGATCTGACCGATTGGGTGAGG  3223
             ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct  3160  AGCGCGGGTGACATAATCTCGGGTCAAACAGGAGCCGTTGATCTGACCGATTGGGTGCGG  3219

Query  3224  TTGTGTGATCAAGAAGGAAGGAGAATGGATTGCATAGACAGAGACATAGCAGGTGGGGAA  3283
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3220  TTGTGTGATCAGGAAGGAAGGAGAATGGATTGCATAGACAGAGACATAGCAGGTGGGGAA  3279

Query  3284  GAGTTCTCAAAGGGAATGGAGGATGCACTTGCTGTTGCAATCAGGTGCATTCTCTCTGTC  3343
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  3280  GAGTTCTCAAAGGGAATGGAGGATGCACTTGCTGTTGCAATCAGGTGCATTGTCTCTGTC  3339

Query  3344  AATGAAAGGCCTAACATCAGACAAGTTCTTGATCATCTTACTTCAATTTCTGCCTGAGAT  3403
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3340  AATGAAAGGCCTAACATCAGACAAGTTCTTGATCATCTTACTTCAATTTCTGCCTGAGAT  3399

Query  3404  TTGTTTGtttttttAT-CTCTTCTAAATTTTTCTGTAAATCTCCATGGATTTCCTTTCAC  3462
             |||||||||||||| | |||| |||||||||||||||||||||||||||||||| |||||
Sbjct  3400  TTGTTTGTTTTTTTCTTCTCT-CTAAATTTTTCTGTAAATCTCCATGGATTTCCCTTCAC  3458

Query  3463  ACATCATCCCAttttttcttcttcttttctggttttatgtttctctctAGTAGTTTGATC  3522
              |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct  3459  CCATCATCCCATTTTTTCTTCTTCTTTACTGGTTTTATGTTTCTCTTTAGTAGTTTGATC  3518

Query  3523  AGATGATTCAGAATGATCCTCAGGTGTTCTT---ACATTTATTTTTTGTTGATTATTTTT  3579
             |||||||||||| |   ||||||||||||||   ||||||||||||||||||||||||||
Sbjct  3519  AGATGATTCAGA-T---CCTCAGGTGTTCTTCTTACATTTATTTTTTGTTGATTATTTTT  3574

Query  3580  CCCCTTCCTTGTAAAGGTAGAAGAAAATCTAATCCCATTGATTCTGACAGAAACATTTGT  3639
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct  3575  CCCCTTCCTTGTAAAGGTAGAAGAAAATCTAATCCCATTGATTCTGACACAAACATTCGT  3634

Query  3640  GTTTGCTTATTGATTCttt  3658
             ||||||||||||||| |||
Sbjct  3635  GTTTGCTTATTGATT-TTT  3652



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 139519062618


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5