BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10030.1
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487829 jgi|Araly1|487829|fgenesh2_kg.6__963__AT5G10030.1 2194 0.0
Ahg918319 jgi|Araly1|918319|Al_scaffold_0008_3070 979 0.0
> Ahg487829 jgi|Araly1|487829|fgenesh2_kg.6__963__AT5G10030.1
Length=1416
Score = 2194 bits (1188), Expect = 0.0
Identities = 1328/1394 (95%), Gaps = 15/1394 (1%)
Strand=Plus/Plus
Query 40 CTTCTTCGAGATGACAAGTTCAGAGAACGAGATTTTACCATCCCTTATTCTATCAG-ACC 98
||||||||||||||||||||||||||| ||||||||| |||||||| | || || | |||
Sbjct 29 CTTCTTCGAGATGACAAGTTCAGAGAAGGAGATTTTATCATCCCTTCTGCTCTC-GAACC 87
Query 99 GGTTTAAGCTGCAGATTTCTAGG-CTTAGCGTTCGATTTCGTCGCTGAAAGTGAAAAGTT 157
||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||
Sbjct 88 GGTTTAAGCTGCAGATTTCTAGGCCTT-GCGTTCGATTTAGCCGCTGAAAGTGAAAAGTT 146
Query 158 CATCTAGCTTTAGTT-TTCTCTTTTCATGGTTTCCGCGGGAAAAGTTCGTCTTTTTTGAA 216
| | | ||||| ||| || ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 147 CCT-TTGCTTTTGTTCTTTTCTTTCCATGGTTTCCGCGGGAAAAGTTCGTC-TTTTTGAA 204
Query 217 GCCCTTTTGACACAAAAGACCAGAACAAGTTGAAGAAATATGAATACAACCTCGACACAT 276
||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||
Sbjct 205 GCCCTTTTGACACAAAAGACCAGAAGAAGTTGAAGAAACATGAATACAACATCGACACAT 264
Query 277 TTTGTTCCACCGAGAAGGTTTGAAGTTTACGAGCCTCTCAACCAAATCGGTATGTGGGAA 336
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 TTTGTTCCATCGAGAAGGTTTGAAGTTTACGAGCCTCTCAACCAAATCGGTATGTGGGAA 324
Query 337 GAAAGTTTCAAGAACAATGGAGACATGTATACGCCTGGCTCTATCATAATCCCGACTAAC 396
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 325 GAAAGCTTCAAGAACAATGGAGGCATGTATACGCCTGGCTCTATCATAATCCCGACAAAC 384
Query 397 GAAAAACCAGACAGCTTGTCAGAGGATACTTCTCATGGGACAGAAGGAACTCCTCACAAG 456
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 385 GAAAAACCAGACAGCTTGTCGGAGGATACTTCTCATGGGACAGAAGAAACTCCTCACAAG 444
Query 457 TTTGACCAAGAGGCTTCCACATCTAGACATCCTGATAAGATACAGAGAAGGCTAGCACAG 516
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 445 TTTGACCAAGAGGCTTCCACATCTAGACATCCTGATAAGATACAGAGAAGGCTTGCACAG 504
Query 517 AATCGAGAGGCAGCTAGGAAAAGTCGTTTGCGCAAGAAAGCTTATGTTCAGCAGCTAGAG 576
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 AATCGGGAGGCAGCTAGGAAAAGTCGTTTGCGCAAGAAAGCTTATGTTCAGCAGCTAGAG 564
Query 577 ACTAGCCGGTTAAAGCTAATTCATTTAGAGCAAGAACTCGATCGTGCTAGACAACAGGGT 636
|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 565 ACAAGCCGGTTGAAGCTAATTCATTTAGAGCAAGAACTCGATCATGCTAGACAACAGGGT 624
Query 637 TTCTATGTGGGGAACGGAGTAGATACCAATGCTCTTAGTTTCTCAGATAACATGAGCTCA 696
|||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 625 TTCTATGTGGGGAATGGAGTAGATTCCAATGCGCTTGGTTTCTCAGATAACATGAGCTCA 684
Query 697 GGGATTGTTGCATTTGAGATGGAATATGGACATTGGGTGGAAGAACAGAACAGGCAAATA 756
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 685 GGGATTGTTGCATTTGAGATGGAATATGGACATTGGGTGGAAGAGCAGAACAGGCAAATA 744
Query 757 TGTGAACTAAGAACGGTTTTACATGGACAAGTTAGTGATATAGAGCTTCGTTCTCTAGTC 816
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 745 AGCGAACTAAGAACGGTTTTACATGGACAAGTTAGTGATATAGAGCTTCGTTCGCTAGTC 804
Query 817 GAGAATGCCATGAAACATTACTTTCAACTCTTCCGAATGAAGTCAGCCGCTGCAAAAATC 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 GAGAATGCCATGAAACATTACTTTCAACTCTTCCGAATGAAGTCAGCCGCTGCAAAAATC 864
Query 877 GATGT-TTTCTATGTCATGTCCGGAATGTGGAAAACTTCAGCAGAGCGGTTTTTCTTGTG 935
||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 865 GATGTCTTT-TATGTCATGTCAGGAATGTGGAAAACTTCAGCAGAGCGGTTTTTCTTGTG 923
Query 936 GATAGGCGGATTTAGACCCTCAGAGCTTCTCAAGGTTCTGTTACCGCATTTTGATCCTTT 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 924 GATAGGCGGATTTAGACCCTCAGAGCTTCTCAAGGTTCTGTTACCGCATTTTGATCCCTT 983
Query 996 GACGGATCAACAACTTTTGGATGTATGTAATCTGAGGCAATCATGTCAACAAGCAGAAGA 1055
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 984 GACGGATCAACAACTTTTGGATGTATGTAATCTGAGGAAATCATGTCAACAAGCGGAAGA 1043
Query 1056 TGCGTTATCCCAAGGTATGGAGAAACTGCAACATACATTAGCAGAGAGTGTAGCAGCCGG 1115
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TGCGTTATCACAAGGTATGGAGAAACTGCAACATACATTAGCAGAGAGTGTAGCAGCCGG 1103
Query 1116 GAAACT-TGGTGAAGGAAGTTATATTCCTCAAATGACTTGTGCTATGGAGAGATTGGAGG 1174
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 AAAACTATGC-GAAGGAAGTTATATTCCTCAAATGACTTGTGCTATGGAGAGATTGGAGG 1162
Query 1175 CTTTGGTCAGCTTTGTAAATCAAGCTGATCATCTGAGACATGAGACATTGCAACAGATGC 1234
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 CTCTGGTCAGCTTTGTAAATCAAGCTGATCATCTGAGACATGAGACATTGCAACAGATGC 1222
Query 1235 ATCGGATCTTAACCACGCGACAAGCGGCTAGAGGTTTGTTAGCATTAGGGGAGTATTTCC 1294
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1223 ATCGGATCTTAACCACGCGACAAGCGGCTAGAGGTTTATTAGCATTAGGGGAGTATTTCC 1282
Query 1295 AAAGGCTTCGAGCTTTGAGTTCGAGTTGGGCGGCTAGGCAACGTGAACCAACGTAATTAA 1354
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1283 AGCGGCTTCGAGCTTTGAGTTCGAGTTGGGCGGCTAGGCAACGTGAACCAACGTAATCAA 1342
Query 1355 GGTGTTTAGATGTCAAGAAAGGTTTGA--GA--CCTTAACAATCAAGAATGGAGTTTGCT 1410
|||| |||||| |||| |||||||||| || |||||| ||||||||||||||||||||
Sbjct 1343 GGTGCTTAGATTTCAACAAAGGTTTGATTGAGTCCTTAAGAATCAAGAATGGAGTTTGCT 1402
Query 1411 GGTGAGTGGATTTT 1424
||||| ||||||||
Sbjct 1403 GGTGAATGGATTTT 1416
> Ahg918319 jgi|Araly1|918319|Al_scaffold_0008_3070
Length=1107
Score = 979 bits (530), Expect = 0.0
Identities = 931/1121 (83%), Gaps = 42/1121 (4%)
Strand=Plus/Plus
Query 256 ATGAATACAACCTCGACACATTTTGTTCCACCGAGAAG-GTTTGAAGTTTACGAGCCTCT 314
|||||| | || |||||||||||||| ||||||||||| ||| | | | ||||| ||| |
Sbjct 1 ATGAATTCGACATCGACACATTTTGTGCCACCGAGAAGAGTTGGTA-TATACGAACCTGT 59
Query 315 CAACCAAATCGGTATGTGGGAAGAAAGTTTCAAGAAC-A-A-TGG--A---G-ACATGTA 365
| | ||| |||||||||||| ||||||||||||| | | | ||| | | | ||| |
Sbjct 60 CCATCAATTCGGTATGTGGGGGGAAAGTTTCAAGAGCAATATTGGCAATGGGAATATGAA 119
Query 366 TACGCC-TGGCTCTATCATAATCCCGACTAA-CGAAAAACCAG---ACAGCTTGTCAGAG 420
|| || | | || || || |||| ||| | | |||| || ||| ||||||||||
Sbjct 120 CACACCAAACCAC-ATTATTATACCGAATAATC-AGAAACTAGACAACAACTTGTCAGAG 177
Query 421 GATACTTCTCATGGGACAGAAGGAACTCCTCACAAGTTTGACCAAGAGGCTTCCACATCT 480
|||||||| ||||| |||| |||||||||||||| |||||| ||||| || || || |||
Sbjct 178 GATACTTCCCATGGAACAGCAGGAACTCCTCACATGTTTGATCAAGAAGCCTCTACGTCT 237
Query 481 AGACATCCTGATAAGATACAGAGAAGGCTAGCACAGAATCGAGAGGCAGCTAGGAAAAGT 540
|||||||| ||||||||||||||| |||| || || || || ||||| ||||||||||||
Sbjct 238 AGACATCCCGATAAGATACAGAGACGGCTTGCTCAAAACCGCGAGGCTGCTAGGAAAAGT 297
Query 541 CGTTTGCGCAAGAAAGCTTATGTTCAGCAGCTAGAGACTAGCCGGTTAAAGCTAATTCAT 600
|| ||||||||||| ||||||||||||||||| || || |||||||| |||||||||||
Sbjct 298 CGCTTGCGCAAGAAGGCTTATGTTCAGCAGCTGGAAACAAGCCGGTTGAAGCTAATTCAA 357
Query 601 TTAGAGCAAGAACTCGATCGTGCTAGACAACAGGGTTTCTATGTGGGGAACGGAGTAGAT 660
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 358 TTAGAGCAAGAACTCGATCGTGCTAGACAACAGGGATTCTATGTGGGGAATGGAATAGAT 417
Query 661 ACCAATGCTCTTAG-TTTCTCAGATAAC-ATGAGCTC-AGGGATTGTTGCATTTGAGATG 717
|| ||| |||| | ||| || || ||| |||| || |||||||| ||||||||| |||
Sbjct 418 ACTAATTCTCTCGGATTT-TCGGA-AACCATGAA-TCCAGGGATTGCTGCATTTGAAATG 474
Query 718 GAATATGGACATTGGGTGGAAGAACAGAACAGGCAAATATGTGAACTAAGAACGGTTTTA 777
||||||||||||||||| |||||||||||| | || ||||| ||||| ||||||||||||
Sbjct 475 GAATATGGACATTGGGTTGAAGAACAGAACCGACAGATATGCGAACTGAGAACGGTTTTA 534
Query 778 CATGGACA-AGTTAGTGATATAGAGCTTCGTTCT-CTAGTCGAGAATGCCATGAAACATT 835
|| ||||| | ||| ||||| |||||||||| | |||||||| || |||||||||||||
Sbjct 535 CACGGACACA-TTAACGATATTGAGCTTCGTT-TGCTAGTCGAAAACGCCATGAAACATT 592
Query 836 ACTTTCAACTCTTCCGAATGAAGTCAGCCGCTGCAAAAATCGATGTTTTCTAT-GTCATG 894
||||| | || ||||| ||||| ||| | ||||||||| |||||| |||| | ||||||
Sbjct 593 ACTTTGAGCTTTTCCGGATGAAATCATCTGCTGCAAAAGCCGATGTCTTCT-TCGTCATG 651
Query 895 TCCGGAATGTGGAAAACTTCAGCAGAGCGGTTTTTCTTGTGGATAGGCGGATTTAGACCC 954
|| || ||||||| |||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 652 TCAGGGATGTGGAGAACTTCAGCAGAGCGGTTTTTCTTGTGGATTGGCGGATTTCGACCC 711
Query 955 TCAGAGCTTCTCAAGGTTCTGTTACCGCATTTTGATC-CTTTGACGGATCAACAACTTTT 1013
|| || |||||||||||||| || || ||||||||| ||| |||||||||||||||| |
Sbjct 712 TCGGATCTTCTCAAGGTTCTTTTGCCACATTTTGATATCTT-GACGGATCAACAACTTCT 770
Query 1014 GGATGTATGTAATCTGAGGCAATCATGTCAACAAGCAGAAGATGCGTT-ATCCCAAGGTA 1072
|||||||| ||||| | ||||| ||||| ||||||||||| ||||| | | |||||||
Sbjct 771 AGATGTATGCAATCTAAAACAATCGTGTCAGCAAGCAGAAGACGCGTTGA-CTCAAGGTA 829
Query 1073 TGGAGAAACTGCAACATACA-TTAGCAGAGAGTGTAGCAGCCGGGA-AACTTGGTGAAGG 1130
||||||| |||||||| || || || || | || ||||| |||| |||| ||||||||
Sbjct 830 TGGAGAAGCTGCAACACACCCTT-GCGGACTGCGTTGCAGC-GGGACAACTCGGTGAAGG 887
Query 1131 AAGTTATATTCCTCAAATGACTTGTGCTATGGAGAGATTGGAGGCTTTGGTCAGCTTTGT 1190
|||||| |||||||| ||| || ||| ||||||||||| || ||||||||||| |||||
Sbjct 888 AAGTTACATTCCTCAGGTGAATTCTGCAATGGAGAGATTAGAAGCTTTGGTCAGTTTTGT 947
Query 1191 AAATCAAGCTGATCATCT-GAGACATGAGACATTGCAACAGATGCATCGGATCTTAACCA 1249
||||| |||||||| || ||||||||| ||||||||||| ||| |||||||||| ||||
Sbjct 948 TAATCAGGCTGATCA-CTTGAGACATGAAACATTGCAACAAATGTATCGGATCTTGACCA 1006
Query 1250 CGCGACAAGCGGCTAGAGGTTTGTTAGCA-TTAGGGGAGTATTTCCAAAGGCTTCGAGCT 1308
| |||||||||||| |||| || ||||| || || |||||||| ||| ||||| ||||
Sbjct 1007 CACGACAAGCGGCTCGAGGATTATTAGCTCTT-GGTGAGTATTTTCAACGGCTTAGAGCC 1065
Query 1309 TTGAGTTCGAGTTGGGCGGCTAGGCAACGTGAACCAACGTA 1349
||||| || ||||||||| || | || ||||||||||||||
Sbjct 1066 TTGAGCTCAAGTTGGGCGACTCGACATCGTGAACCAACGTA 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62810814005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5