BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G10040.1

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940470 jgi|Araly1|940470|scaffold_601014.1                        320    5e-87


> Ahg940470 jgi|Araly1|940470|scaffold_601014.1
Length=251

 Score =  320 bits (173),  Expect = 5e-87
 Identities = 215/234 (92%), Gaps = 7/234 (3%)
 Strand=Plus/Plus

Query  1    ATGGATTCATCGGCGGACATAGCAATATTAGTGGCAGATGAATGTAACCAAAAGGTGAAT  60
            |||||||||||||||||||||||||||||||||||||| |||||| | || |||||||||
Sbjct  21   ATGGATTCATCGGCGGACATAGCAATATTAGTGGCAGAGGAATGTGAGCACAAGGTGAAT  80

Query  61   ACAACGGCAGAGAAAGCATCGAATACAGCGGAGGTTGGGTGGTTGATGATGTTTGG-GAT  119
              ||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||
Sbjct  81   TTAACGGCAGAGAAAACATCGAATTCAGCGGAGGTTGGGTGGTTGATGATGTT-GGAGAT  139

Query  120  TGAGGAGAAGAAGATTGAAAGTCTGATGAGGAAATTTGAAGCT-AAATCTCAGTTTGCTG  178
            |||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct  140  TGAGGAGAAGAAGATTGAAAGTTTGATGAGGAAATTTGAA-CTTAAATCTCAGTTTGCTG  198

Query  179  TGGCGGTTTCTAGTGGCTTTTT-TCTGCTTAACTATGTTT-CATCCTTGTACTA  230
            |||| ||||||||||||||||| ||||||||| ||| ||| |||| ||||||||
Sbjct  199  TGGCTGTTTCTAGTGGCTTTTTCTCTGCTTAATTAT-TTTACATCGTTGTACTA  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15681947079


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5