BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10050.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487830 jgi|Araly1|487830|fgenesh2_kg.6__964__AT5G10050.1 1483 0.0
Ahg951363 jgi|Araly1|951363|scaffold_803250.1 584 4e-166
> Ahg487830 jgi|Araly1|487830|fgenesh2_kg.6__964__AT5G10050.1
Length=920
Score = 1483 bits (803), Expect = 0.0
Identities = 882/921 (96%), Gaps = 2/921 (0%)
Strand=Plus/Plus
Query 52 AAAATGGAGAGTGGCGATGAGAGTCCGGTGGTTCTAATTACGGGATGTTCTCAGGGAGGA 111
||||||||||| | ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AAAATGGAGAGCGACGACGAGAGTCCGGTGGTTCTAATTACGGGGTGTTCTCAGGGAGGG 60
Query 112 ATTGGTCACGCGCTGGCCCGTGAGTTCACTGAGAAGGGATGTCGAGTGGTGGCGACGAGT 171
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 ATTGGTCACGCGCTGGCACGTGAGTTCACTGAGAAGGGATGCCGAGTGGTGGCGACGAGT 120
Query 172 CGATCACGGAGTACGATGACGGATCTGGAGCAAGATTCGAGGTTATTCGTGAAGGAGCTT 231
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGATCACGGAGCACCATGACGGATCTGGAGCAAGATTCGAGGTTATTCGTGAAGGAGCTT 180
Query 232 GATGTGCAATCGGACCAGAATGTGAGTAAGGTTTTGTCGGAGGTTATTGATAAGTTCGGT 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATGTGCAATCGGACCAGAATGTGAGTAAGGTTTTGTCGGAGGTTATTGATAAGTTCGGT 240
Query 292 AAGATCGACGTTCTTGTTAATAACGCCGGAGTTCAGTGCGTTGGACCTCTGGCGGAGACT 351
| ||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||||
Sbjct 241 AGGATCGACGTTCTTGTCAACAACGCCGGAGTTCAGTGTGTCGGACCACTGGCGGAGACT 300
Query 352 CCAATTTCCGCCATGGAAAACACATTCAACACCAATGTTTTTGGTTCCATGAGGATGACT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCAATTTCCGCCATGGAAAACACATTCAACACCAATGTTTTTGGTTCCATGAGGATGACT 360
Query 412 CAAGCTGTTGTACCACACATGGTGTCTAAGAAAAAGGGAAAGATTGTCAACGTTGGAAGT 471
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 CAAGCTGTTGTACCTCACATGGTGTCTAAAAAAAAGGGAAAGATTGTCAACGTTGGAAGT 420
Query 472 ATCACTGTTATGGCACCTGGTCCATGGGCTGGTGTCTATACAGCTACCAAAGCTGCTATT 531
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 ATCACTGTTATGGCACCTGGTCCATGGGCTGGGGTCTATACAGCTACCAAAGCTGCTATT 480
Query 532 CATGCTCTTACCGATACTCTGAGGTTGGAGCTTC-GTCCGTTTGGGATTGATGTCATCAA 590
||||||||||||||||| |||||||||||||||| | || ||||||||||||||||||||
Sbjct 481 CATGCTCTTACCGATACCCTGAGGTTGGAGCTTCTGCCC-TTTGGGATTGATGTCATCAA 539
Query 591 TGTTGTCCCGGGAGGAATAAGAACAAACATAGCAAACTCAGCTGTGGCAACTTTCAACAA 650
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 540 CGTTGTCCCGGGAGGAATAAGAACAAACATAGCGAACTCAGCTGTGGCAACCTTCAACAA 599
Query 651 AATGCCTGAGCTGAAACTATACAAGCCTTATGAAGAAGCTATCAGAGAAAGGGCGTTTAT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AATGCCTGAGCTGAAACTATACAAGCCTTATGAAGAAGCTATCAGAGAAAGGGCGTTTAT 659
Query 711 ATCACAGAGGATGAATCCAACTCCTGCAGAAACATTTGCCAGAGACACTGTAGCCGCAGT 770
||||||||||||||| |||||||||||||||||||| |||| |||||| ||||| |||||
Sbjct 660 ATCACAGAGGATGAAGCCAACTCCTGCAGAAACATTCGCCAAAGACACCGTAGCTGCAGT 719
Query 771 GCTGAAGAAGAATCCACCCGCTTGGTTCTCGTCAGGCAGGTATTCAACCCTCATGGCAGT 830
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 GCTGAAGAAGAACCCACCCGCTTGGTTCTCTTCAGGCAGGTATTCAACCCTCATGGCAGT 779
Query 831 CATGTATCATATGCCCTTATGGCTCAAAGATTTTTTCCAGAAGCAGGTTTTAATGAAGAA 890
|||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 780 CATGTACCATATGCCCCTATGGCTCAAAGATTTTCTCCAGAAGCAGGTTTTAATGAAGAA 839
Query 891 GTGATAATCAGGTTGGGGTTTAAGACAGAATGTACCTTAAACACGAATGTAAAAGCTTTG 950
|||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 840 GTGATAATCAGGTTGGGGTTTAAGACAGAATGTAACATAAACACGAATGTAAAAGATTTG 899
Query 951 TTCAAATTGTTAATTGAATCT 971
||||||||||||||| |||||
Sbjct 900 TTCAAATTGTTAATTAAATCT 920
> Ahg951363 jgi|Araly1|951363|scaffold_803250.1
Length=901
Score = 584 bits (316), Expect = 4e-166
Identities = 640/795 (81%), Gaps = 28/795 (4%)
Strand=Plus/Plus
Query 65 GCGATGAGA-GTCCGGTGGTTCTAATTACGGGATGTTCTCAGGGAGGAATTGGTCACGCG 123
|||| |||| | || || ||||| || || |||||||||||||||||||| || ||||||
Sbjct 36 GCGACGAGACG-CCAGTTGTTCTCATCACAGGATGTTCTCAGGGAGGAATCGGCCACGCG 94
Query 124 CTGGCCCGTGAGTTCACTGAGAAGGGATGTCGAGTGGTGGCGACGAGTCGATCACGGAGT 183
|||| ||||||||| | | ||| || |||||||||||||| ||||||||||| | |||
Sbjct 95 TTGGCGCGTGAGTTCTCGGCGAATGGTTGTCGAGTGGTGGCTACGAGTCGATCGCAGAGC 154
Query 184 ACGATGAC-GGATCTGGAGCAAGATTCGAGGTTATTCGTG-AAGGAGCTTGATGTGCAAT 241
|||||||| | || ||||| ||||| | | ||| || ||| || ||||| ||||| ||||
Sbjct 155 ACGATGACTGAAT-TGGAGAAAGATCCCAAGTTCTTTGTGCAA-GAGCTCGATGTTCAAT 212
Query 242 CGGACCAGAATGTGAGTAAGGTTTTGTCGGAGGTTATTGATAAGTTCGGTAAGATCGACG 301
|||| |||| |||||||| || ||||| | ||||| || || || ||| ||||||| |
Sbjct 213 CGGAGCAGAGCGTGAGTAAAATTGTGTCGAAAGTTATCGACAAATTTGGTCAGATCGATG 272
Query 302 TTCTT-GTTAATAACGCCGGAGTTCAGTGCGTTGGACCTCTGGCGGAGACTCCAATTTCC 360
|| || |||||||| |||||||||||||| | |||||| |||| |||| |||||||||
Sbjct 273 TT-TTGGTTAATAATGCCGGAGTTCAGTGTATCGGACCTTTGGCCGAGATTCCAATTTCA 331
Query 361 GCCATGGAAAACACATTCAACACCAATGTTTTTGGTTCCATGAGGATGACTCAAGCTGTT 420
|||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct 332 GCCATGGAAAACACCTTCAACACCAATGTGCTCGGTTCCATGAGGATGACTCAAGCTGTT 391
Query 421 GTACCACACATGGTGTCTAAGAAAAAGGGAAAGATTGTCAACGTTGGAAGTATCA-CTGT 479
||||||||||||| |||||||||||||||||||||||||||| | |||||||| | | |
Sbjct 392 GTACCACACATGGCGTCTAAGAAAAAGGGAAAGATTGTCAACATAGGAAGTATTAGCA-T 450
Query 480 TATGGCACCTGGTCCATGGGCTGGTGTCTATACAGCTACCAAA-GCTGCTATTCATGCTC 538
|||||||| || ||||||||||| || ||||| || | |||| |||||| |||||||||
Sbjct 451 AATGGCACCAGGACCATGGGCTGGGGTTTATACTGC-ATCAAAAGCTGCTCTTCATGCTC 509
Query 539 TTACCGATACTCTGAGGTTGGAGCTTC-GTCCGTTTGGGATTGATGTCATCAATGTTGTC 597
||||||| ||| | |||||||||||| | || || || |||||||| ||||| ||||
Sbjct 510 TTACCGACACTTTAAGGTTGGAGCTTAAG-CCATTCGGAATTGATGTAATCAACATTGTA 568
Query 598 CCGGGAGGAATAAGAA-CAAACATAGCAAACTCAGCTG-TGGCAACTTTCAACAAAATGC 655
|| ||||| || || |||||||||| ||||||| | | | | ||||||||| | |
Sbjct 569 CCAGGAGGTATTC-AATCAAACATAGCTAACTCAGG-GATATCGAGTTTCAACAATTTAC 626
Query 656 CTGAGCTGAAACTATACAAGCC-TTATGAAGAAGCTATCAGAGAAAGGGCGTTTATATCA 714
|||| ||||| ||||||| || || || || |||||| | || || |||||| | |||
Sbjct 627 CTGAATTGAAAGTATACAAACCATTC-GAGGACGCTATCCGTGAGAGAGCGTTTCTGTCA 685
Query 715 CAGAGGATGAATCCAACT-CCTGCAGAAACATTTGCCAGAGACACTGTAGCCGCAGTGCT 773
|| | || || |||| | || |||| |||||||||| ||| ||||| ||| |||||
Sbjct 686 CAAAACATAAAGCCAA-TACCCACAGAGACATTTGCCAAAGAGACTGTTTCCGTGGTGCT 744
Query 774 GAAGAAGAATCCACCCGCTTGGTTCTCGT-CAGGCAGGT-ATTCAACCCTCATGGC-AGT 830
|||||| || ||||| ||||||| ||| | |||| |||| || | ||| ||||||| | |
Sbjct 745 GAAGAAAAACCCACCGGCTTGGTACTC-TACAGGAAGGTTAT-CGACCGTCATGGCGA-T 801
Query 831 CATGTATCATATGCC 845
|||| | ||||||||
Sbjct 802 CATGCACCATATGCC 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5