BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10060.1
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487831 jgi|Araly1|487831|fgenesh2_kg.6__965__AT5G10060.1 3040 0.0
Ahg496743 jgi|Araly1|496743|fgenesh2_kg.8__2559__AT5G65180.1 785 0.0
> Ahg487831 jgi|Araly1|487831|fgenesh2_kg.6__965__AT5G10060.1
Length=1972
Score = 3040 bits (1646), Expect = 0.0
Identities = 1873/1980 (95%), Gaps = 25/1980 (1%)
Strand=Plus/Plus
Query 17 aaaaCACAAGTTTCCTGATTCCTCTCTTCTCTGCGATTTTAGCTCTAGGGATCGATTTCG 76
||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 AAAACTCAACTTTCCTGATTCCTCTCTTCCCTGCGATTTTAGCTCTAGGGATCGATTTCG 60
Query 77 GCGTCAAACGTCGTCGTTTTCGACCATCTCCTACTTACTACTACTCAGCTGCTTCTGCCT 136
|||||||||||||||||||| ||| |||| | | |||||||||||| ||||||||||||
Sbjct 61 GCGTCAAACGTCGTCGTTTTTGACTATCT-C--C-TACTACTACTCATCTGCTTCTGCCT 116
Query 137 TCTAGGGTTC---TTTCTCCGTTCACCCTCCGCCGCACGAGTTGTCCAGCTCCGCCGCAT 193
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TCTAGGGTTCTTTTTTCTCCGTTCACCCTCCGCCGCACGAGTTGTCCAGCTCCGCCGCAT 176
Query 194 TCTTCTGTCTCCCAGATCACCGGCTTTAAGCAAATCCGGCTGCTTTTCACTCTAATTCGT 253
||||||||||| ||| ||||||||||||||| ||||||||||||| |||||| |||||||
Sbjct 177 TCTTCTGTCTCACAGTTCACCGGCTTTAAGCGAATCCGGCTGCTTCTCACTCAAATTCGT 236
Query 254 AAACCACTTGTG-GGATTTGAGCATCTTTTACATTCTCCAAAATCTCTGCTTTCTAGGGT 312
|||||||||| | |||||||||| |||||| | | || ||||||||| |||||||||||
Sbjct 237 AAACCACTTG-GAGGATTTGAGCTTCTTTTGCCTACTGGAAAATCTCTACTTTCTAGGGT 295
Query 313 TTTGTGAGTTTTGGTGGGATGAGTAGTGTGTTCAGTGATCAGATCCTGATTGATAAGCTC 372
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 296 TTTGTGAGTTTTGGTGGGATGAGTAGTGTGTTCAGTGAACAGATCCTGATTGATAAGCTC 355
Query 373 GCTAAGCTCAATAGCAGTCAACAGT-CTATCGAAACTCTGTCACATTGGTGTATATTCAA 431
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 356 GCTAAGCTCAATAGCACTCAACAGTGC-ATCGAAACTCTGTCACATTGGTGTATATTCAA 414
Query 432 TCGGAGCAAAGCAGAATTGATCGTTACGACATGGGAGAAACAGTTTCACAGTACAGAGAT 491
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TCGGACCAAAGCTGAATTGATCGTTACGACATGGGAGAAACAGTTTCACAGTACAGAGAT 474
Query 492 GGATCAGAAAGTCCCTCTTTTGTATTTGGCTAATGATATTCTTCAGAACAGTAAGCGTCA 551
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GGCTCAGAAAGTCCCTCTTATGTATTTGGCTAATGATATTCTTCAGAACAGTAAGCGTCA 534
Query 552 AGGTAATGAGTTTGTGCAAGAGTTCTGGAATGTTCTTCCTAAGGCTCTTAAAGACATTGT 611
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 535 GGGTAATGAGTTCGTGCAAGAGTTCTGGAATGTTCTTCCTAAGGCTGTTAAAGACATTGT 594
Query 612 TTCTCAAGGAGATGATAATGGCAAAAGCGCTGTCGCACGTGTGATCAAGATATGGGAAGA 671
|||||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||
Sbjct 595 TTCTCAAGGAGATGATTATGGCAAAAGCGTTGTCTCACGTTTGGTCAAGATATGGGAAGA 654
Query 672 AAGAAGAGTGTTTGGATCACGTTCAAAGAGTCTTAAAGATGTAATGCTTGGAGAAGATGT 731
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AAGAAGAGTGTTTGGATCCCGTTCAAAGAGTCTTAAAGATGTAATGCTTGGAGAAGATGT 714
Query 732 TCCTCTGCCACTTGATATCAGCAAAAAGCGGCCTCGCGGATCCAAATCTTCAAAACGGGA 791
||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct 715 TCCCCTGCCACTTGATATCAGCAAAAAGCGGTCTCGCGGATCCAGATCTGGAAAACGGGA 774
Query 792 GTCAAAATCGTCCAGAACGAAATTAGCATCAAGTGGTGGTGTGGCTGAGAAGATAGCATC 851
||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||
Sbjct 775 TTCAAAATCGTCCAGAGCGAAATTATCATCAAGTGGAGGTGTGGCTGAGAAGATAGCATC 834
Query 852 AGCATATCATTTGGTTGTTGCAGAAAACTCAAATGAAGAAGCTGAGATGAATAAATGTAA 911
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGCATATCATTTGGTTGTTGCCGAAAACTCAAATGAAGAAGCTGAGATGAATAAATGTAA 894
Query 912 GTCTGCAGTTAAACGAATCCGGAAGATGGAGAAAGATGTTGAAGAAGCCTGCTCTACTGC 971
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GTCCGCAGTTAAACGAATCAGGAAGATGGAGAAAGATGTTGAAGAAGCCTGCTCTACTGC 954
Query 972 AAAAGACAACCCGAAGAGAAAATCTTTGGCGAAAGAATTGGAAGAAGAAGAATACCTTTT 1031
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TAAAGACAACCCGAAGAGAAAATCTTTGGCGAAAGAATTGGAAGAAGAAGAATACCTTTT 1014
Query 1032 GAGACAATGTATTGAGAAACTTAAATCTGTTCAAGGAAGTAGAAGTTCCCTTGTGAACCA 1091
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1015 GAGACAATGTATTGAGAAACTTAAATCTGTCCAAGGAAGTAGAACTTCCCTTGTGAACCA 1074
Query 1092 GCTTAAAGATGCACTACGTGAACAGGAATCCGAACTGGACAATCTTAAAGCTCAGATTCA 1151
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GCTTAAAGATGCATTACGCGAACAGGAATCCGAACTGGACAATCTTAAAGCTCAGATTCA 1134
Query 1152 GGTAGCTAA-AGAACAAACAGAGGAAGCCCAAAACATGCAGAAACGGCTTAATGATGAGG 1210
||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GGTCGC-ACTAGAACAAACAGAGGAAGCCCAAAACATGCAGAAACGGCTTAATGATGAGG 1193
Query 1211 ATTACACATCAAAACAAACAACTGCTGCCACTACGATAACCGAGACAAATGACAACACCA 1270
||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1194 ATTACGCATCAAAACCAACAGCTGCTGCCACTACGATAACCGAGACAAATGACAACACAA 1253
Query 1271 AATCTGGTCAAGCATCAAAAATGACGCCTGCATCTATTGCTGCAATGCTCACAGCGTCAA 1330
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1254 AATCTGGTCAAGCATCAAAAATGACGCCTGCATCTATTGCTGCGATGCTCACAGCATCAA 1313
Query 1331 CCTCATCACATATGATAATGCAGTCTGTTCTATCTTCATTCGCAGCTGAAGCAACAAAGA 1390
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1314 CCTCATCACACATGATAATGCAATCTGTTCTATCTTCATTCGCAGCTGAAGCAACAAAGA 1373
Query 1391 CTTCTGGTCTATCCAAATCAGAGAGCACAGTTCCGGTCTCAGACACTAATGCTTCATTCC 1450
||||||||||||||||| ||||||||||| |||| || ||||||||||||||||| ||||
Sbjct 1374 CTTCTGGTCTATCCAAACCAGAGAGCACAATTCCAGTTTCAGACACTAATGCTTCGTTCC 1433
Query 1451 CTTCTTACAACAACTCCCAGAATCAGACACCTACCACACAAGGTCAGTACCATGTAATAC 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 CTTCTTACAACAACTCCCAGAATCAGACACCTACCACACAAGGTCAGTACCATGTAATAC 1493
Query 1511 CTAATCCACCACCACCACAGTTCCTAAAACCACCGGTAATGAATAACCCTTACGCCTTTG 1570
||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct 1494 CTAATCCACCACCACCACAGTTCTTAAAACCACCGGTAATGAACAACCCTTACGGCTTTG 1553
Query 1571 GCAACATTCCGTTAATGCCACCTGGGCTTCCGcc---accaccaccaccaccacATTTGA 1627
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1554 GCAACATTCCGTTAATGCCACCTGGACTTCCGCCGCCACCACCACCACCACCACATTTGA 1613
Query 1628 TAGGTAATCAACAGCCTCAAATTCCTCAGTCGAACTCAGCTCAGCAATCTCAACAAGGTC 1687
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1614 TAGGTAATCAACAGCCTCAAATTCCCCAGTCAAACTCAGCTCAGCAATCTCAACAAGGTC 1673
Query 1688 CAACTTTCCAGCCACCAGGGATAATGTATTACGGAGCTCCACACCATTCTTAAAAT-AGA 1746
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1674 CAACTTTCCAGCCACCGGGGTTAATGTATTACGGAGCTCCACACCATTCTTAAAATTAGA 1733
Query 1747 AATGATGTTAGTTAATAGC-TTTAGATAGTTCTGACCCTTTTT---ATCTGCTCGAATGC 1802
||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 1734 AATGATGTTAGTTAATAGCATTTAGATAGTTCTGACCCTTTTTCTTATCTGATCGAATGT 1793
Query 1803 GGTTTCGATGTTACATTGTTGGGTCAAATCAAAGTAGAACTACTGTTCCTCTGGTTGTAG 1862
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 GGTTTCGATGTTATATTGTTGGGTCAAATCAAAGTAGAACTACTGTTCCTCTGGTTGTAG 1853
Query 1863 AATCCTCACCTTTT-CCCGTTACAGATATTTGTACCACAAG-TTTCTACAACATAATGTA 1920
|||||||||||||| |||||||| |||| |||||||||||| ||| ||||||||||||||
Sbjct 1854 AATCCTCACCTTTTTCCCGTTACTGATAATTGTACCACAAGGTTT-TACAACATAATGTA 1912
Query 1921 ATAATTT-CTCCTGTTCACTCTCTATCTCCTTCCTGTATGTATGTATACTTCTATACCTT 1979
||||||| |||||||| |||||||||||||||| || ||||||||| |||||||||||||
Sbjct 1913 ATAATTTTCTCCTGTTTACTCTCTATCTCCTTCATGCATGTATGTAGACTTCTATACCTT 1972
> Ahg496743 jgi|Araly1|496743|fgenesh2_kg.8__2559__AT5G65180.1
Length=1819
Score = 785 bits (425), Expect = 0.0
Identities = 763/921 (83%), Gaps = 44/921 (5%)
Strand=Plus/Plus
Query 304 TTCTAGGGTTTTG---TGAGTTTT-GG-TGGGATGAGTAGTGTGTTCAGTGATCAGATCC 358
||||||||||||| ||| |||| || ||||||||||||| ||||||||| |||| |
Sbjct 237 TTCTAGGGTTTTGATTTGA-TTTTGGGTTGGGATGAGTAGTCCGTTCAGTGAAGAGATAC 295
Query 359 TGATTGATAAGCTCGCTAAGCTCAATAGCAGTCAACAGTCTATCGAAACTCTGTCACATT 418
|||||||||||||||| |||||||| |||| ||| || || ||| ||||||||||||| |
Sbjct 296 TGATTGATAAGCTCGCCAAGCTCAACAGCACTCAGCAATCCATCCAAACTCTGTCACAGT 355
Query 419 GGTGTATATTCAATCGGAGCAAAGCAGAATTGATCGTTACGACATGGGAGAAACAGTTTC 478
|||||||| || |||| || |||| || ||| | |||||||||||||||||||||||||
Sbjct 356 GGTGTATAGTCCATCGTAGTGAAGCTGAGTTGGTTGTTACGACATGGGAGAAACAGTTTC 415
Query 479 ACAGTACAGAGATGGATCAGAAAGTCCCTCTTTTGTAT-TTGGCTAATGATATTCTTCAG 537
||||||||||||| | ||||||||| ||||| ||||| ||| |||| || |||||||||
Sbjct 416 ACAGTACAGAGATTGCTCAGAAAGTGCCTCTCTTGTACCTTG-CTAACGACATTCTTCAG 474
Query 538 AACAGTAAGCGTCAAGGTAATGAGTTTGTGCAAGAGTTCTGGAATGTTCTTCCTAAG-GC 596
||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||| | ||
Sbjct 475 AACAGCAAGCGTCAGGGTAATGAGTTTGTGCAAGAGTTCTGGAAAGTTCTCCCTG-GTGC 533
Query 597 TCTTAAAGA-CATTGTTTCTCAAGG-AGATGA-TAATGGCAAAAG-CGCTGTCGCACG-T 651
||| ||||| | ||||||| | || |||||| || ||| ||||| || ||| |||| |
Sbjct 534 TCTCAAAGATC-TTGTTTC-CTTGGGAGATGACTA-TGG-AAAAGGCGTTGTTTCACGAT 589
Query 652 GTGATCAAGATATGGGAAGAAAGAAGAGTGTTTGGATCACGTTCAAAGAGTCTTAAAGAT 711
|| | || ||||||||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct 590 -TGGTTAATATATGGGAAGAGAGAAGAGTCTTTGGGTCCCGTTCAAAGAGTCTTAAAGAT 648
Query 712 GTAATGCT-TGGAGAAGATGTTCCTCTGCCACTTGATATCAGCAAAAAGCGGCCT-CGCG 769
|||||||| | |||||| | ||||| ||||||||| |||| |||||||| | || |
Sbjct 649 GTAATGCTCTC-AGAAGAAGCTCCTCCACCACTTGATGTCAGTAAAAAGCGAT-TACGGG 706
Query 770 GATCCAAATCTTCAAAACGGGAGTCAAAATC-GTCCA-GAACGAAATTAGCATCAAGTGG 827
|||| |||||| | ||||| || |||||||| | ||| || ||||||| || || |||
Sbjct 707 GATCTAAATCTGCGAAACGAGATTCAAAATCTG-CCAAGAT-GAAATTAACA--AA-TGG 761
Query 828 TGGTGTGGCTGAGAAGATAGCATCAGCATATCA-TTTGGTT-GTTGCAGAAAACTCAAAT 885
|||||| | |||||||||| ||| |||| ||| ||||||| || ||||| |||||||||
Sbjct 762 AGGTGTGACCGAGAAGATAGTATCTGCAT-TCAATTTGGTTAGT-GCAGAGAACTCAAAT 819
Query 886 GAAGA-AGCTGAGATGAATAAATGTAAGTCTGCAGTTAAACGAATCCGGAAGATGGAGAA 944
||||| | | |||||||| ||||| |||||||| |||| ||| || | |||||||||||
Sbjct 820 GAAGAGA-CAGAGATGAACAAATGCAAGTCTGCCGTTAGACGTATTAGAAAGATGGAGAA 878
Query 945 AGATGTTGAAGAAGCCTGCTCTACTGCAAAAGACAACCCGAAG-AGAAAATCTTTGGCGA 1003
|||||||||||| |||||||| |||||||||||| || || | |||||||| ||||| |
Sbjct 879 AGATGTTGAAGATGCCTGCTCCACTGCAAAAGAC--CC-GA-GTAGAAAATCATTGGCAA 934
Query 1004 AAGAATTGGAAGAAGAAGAATACCTTTTGAGACAATGTATTGAGAAACTTAAATCTGTTC 1063
||||| |||||||||||||| || || ||||||||| | ||||||||||||||||||||
Sbjct 935 AAGAACTGGAAGAAGAAGAAAACATTCTGAGACAATCTGTTGAGAAACTTAAATCTGTTG 994
Query 1064 AAGGAAGTAGAAGTTCCCTTGTGAACCAGCTTAAAGATGCACTACGTGAACAGGAATCCG 1123
||| |||||| | || || || || | |||| || || ||||| ||||||||||| |
Sbjct 995 AAGAAAGTAGGACATCTCTCGTAAATTATCTTAGGGAAGCGCTACGCGAACAGGAATCTG 1054
Query 1124 AACTGGACAATCTTAAAGCTCAGATTCAGGTAGCTA-AAGAACAAACAGAGGAAGCCCAA 1182
|| |||| |||||| || ||||||| |||||||| | |||||||||| || |||||||||
Sbjct 1055 AATTGGAGAATCTTCAATCTCAGATACAGGTAGC-ACAAGAACAAACTGAAGAAGCCCAA 1113
Query 1183 AACATGCAGAAACGGCTTAAT 1203
||||||||||||||||| |||
Sbjct 1114 AACATGCAGAAACGGCTCAAT 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74618789955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5