BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10070.2
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487833 jgi|Araly1|487833|fgenesh2_kg.6__967__AT5G10070.2 1428 0.0
> Ahg487833 jgi|Araly1|487833|fgenesh2_kg.6__967__AT5G10070.2
Length=1020
Score = 1428 bits (773), Expect = 0.0
Identities = 913/976 (94%), Gaps = 27/976 (3%)
Strand=Plus/Plus
Query 10 AACATCGTTCCGTCGGCTACCATTAGAAAACCTAATTTACATATAAAACCCTAAGCCGAT 69
||||||| |||||||| |||| ||||||| |||||||||||||||||||||| |||||||
Sbjct 1 AACATCGGTCCGTCGGTTACCTTTAGAAACCCTAATTTACATATAAAACCCTGAGCCGAT 60
Query 70 CaaaaaaaCCTTTGCATTTGTCGGGAAA-ATCGCCGG-AAAAATGGGTTACGGGAAGCAT 127
| ||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 61 C-AAAAAGCCTTTCCATTTGTC-GGAAATATCGCCGGAAAAAATGGGTTACGGGAAGCAC 118
Query 128 AATCGATCTAAAGGAGGTAATTC-AAGTCGT-G--------GTCGGACTGATAATCTTGC 177
|||||||||| |||||| ||||| || |||| | ||||||||||||||||||
Sbjct 119 AATCGATCTAGAGGAGGCAATTCGAA-TCGTGGTCAAACTAGTCGGACTGATAATCTTGG 177
Query 178 AAGGGAAGATGAATCGCTTCCTCTTGATCAAGAACCTGA-GGATGAAGCACCAGTTCCAA 236
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 178 AAGGGAAGATGAATCGCTTCCTCTTGATCAAGAGCCTGAGGGA-GAAGCACCAGTTCCAA 236
Query 237 AAGTTCAATTGGCAATGTGGGATTTTGGTCAATGTGATGCAAAGAGGTGCACAGGTCGTA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AAGTTCAATTGGCAATGTGGGATTTTGGTCAATGTGATGCAAAGAGGTGCACAGGTCGTA 296
Query 297 AGCTTGCTAGATTTAACTTGTTAAAAGAATTACGGGTTAACACTGGATTCGGGGGTGTTG 356
||||||||||||||||||||||||||||||| |||||||||||||| || || || ||||
Sbjct 297 AGCTTGCTAGATTTAACTTGTTAAAAGAATTGCGGGTTAACACTGGCTTTGGAGGAGTTG 356
Query 357 TTTTAAGTCCAGTTGGTAGACAATGTGTTTCAAGGGAAGACTATGATCTGATTAAAAGGA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTTTAAGTCCAGTTGGTAGACAATGTGTTTCAAGGGAAGACTATGATCTGATTAAAAGGA 416
Query 417 AAGGATTAGCTGTTGTTGATTGTTCTTGGGCACGTCTAACTGATGTCCCGTTTGCAAAGC 476
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AAGGATTAGCCGTTGTTGATTGTTCTTGGGCACGTCTAACTGATGTCCCGTTTGCAAAGC 476
Query 477 TGCGTTGTACTGCACCTCGTCTTTTACCATGGTTAGTAGCAGCTAATCCAGTAAATTATG 536
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 477 TGCGTTGTACTGCTCCTCGTCTTTTACCATGGTTAGTAGCAGCAAATCCAGTAAATTATG 536
Query 537 GAAGACCATGTGAGTTATCATGTGTGGAGGCTTTATCTGCCGCTTTAATACTATGTGGGG 596
|||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 537 GAAGACCATGTGAGCTATCTTGTGTGGAGGCTTTATCTGCCGCCTTAATACTATGTGGGG 596
Query 597 AGAAGGAAACTGCAGAACTTTTGTTAGGAAAATTCAAATGGGGTCATGCCTTTTTATCT- 655
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 597 AGAAGGAAACTGCAGAGCTTTTGCTAGGAAAATTCAAATGGGGTCATGCCTTTTTATCTC 656
Query 656 TTGAACAAGGATATTCTAAAGGAGTACTCAAAATGTGAGAATAGCGCTGAGATCATCTCA 715
|| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 657 TT-AACAAGGATATTCTAAAAGAGTACTCGAAATGTGAGAATAGTGCTGAGATCATCTCA 715
Query 716 GTTCAAAATTCTTGGCTTACTCAGCAAACTCAGATCCCAAAACAACCACCTGCGCTCGAA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GTTCAAAATTCTTGGCTTACTCAGCAAACTCAGATCCCAAAACAACCACCTGCGCTCGAA 775
Query 776 GAACGTAAAGATGTTAAGAAAGATGGTGAATCTGGTGATGA--A-TCAGAGGAGGATGAT 832
||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 776 GAACGTAAAGATGTTAAGAAAGATGGTGAATCTGGTGATGATGAATCAGAGGATGATGAG 835
Query 833 GAAGATGGCCTCCCTCCTCTAGAGAGGAACATGAACCATATCAAATTAGAAGACAGTGAG 892
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 836 GAAGATGGTCTCCCTCCTCTAGAGAGGAACATGAACCATATCAAATTGGAAGACAGTGAG 895
Query 893 GAGGAAGATAGCGAGTGAAAAGCCATTGGAGAAATCCTATTTGATCTAAAAAA----GTT 948
|| ||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 896 GAAGAAGACAGCGAGTGAAA-GCCATTGGAGAAATTCTATTTGATCTAAAAAAAAAAGTT 954
Query 949 TCCATCTTTGGCTTAC 964
|| |||||||||||||
Sbjct 955 TCTATCTTTGGCTTAC 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5