BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10080.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487834 jgi|Araly1|487834|fgenesh2_kg.6__968__AT5G10080.1 2440 0.0
> Ahg487834 jgi|Araly1|487834|fgenesh2_kg.6__968__AT5G10080.1
Length=1590
Score = 2440 bits (1321), Expect = 0.0
Identities = 1512/1601 (94%), Gaps = 25/1601 (2%)
Strand=Plus/Plus
Query 1 ATGGTGTCACGATCTGCTTTTTTACTCTTCTGTGTGCTATTTCTAGCTACAGAGGAGACT 60
|||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 1 ATGGCGTCACGATCTGCTTTTATACTCTTCTGTGTTCTATTTCTAGCTACAGAGGGGACT 60
Query 61 CTAGCTTCCT-TATTCTCATCAAGGCTGATTCATCGCTTCTCCGACGAAGGAAGAGCGTC 119
||||||| || | || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CTAGCTT-CTGTCTTTTCCTCAAGGCTGATCCATCGCTTCTCCGACGAAGGAAGAGCGTC 119
Query 120 GATTAAGACTCCGAGTTCGTC-GGATTCGTTGCCGAATAAACAGAGCTTAGAGTATTATC 178
||||||||||||||||||||| ||| ||||||||| | ||||||||||| | ||||||||
Sbjct 120 GATTAAGACTCCGAGTTCGTCGGGA-TCGTTGCCGGAGAAACAGAGCTTGGCGTATTATC 178
Query 179 GGTTACTGGCTGAAAGTGATTTCCGAAGACAGAGAATGAATCTTGGTGCTAAGGTTCAGT 238
| || || ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 179 GATTGCTAGCTAAAAGTGATTTCCGAAGACAGAGAATGAATCTTGGTGCTAAGTTTCAGT 238
Query 239 CTCTTGTTCCATCTGAAGGAAGCAAAACTATATCTTCTGGAAATGACTTTGGATGGCTAC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTCTTGTTCCATCTGAAGGAAGCAAAACTATATCTTCTGGAAATGACTTTGGATGGCTAC 298
Query 299 ACTATACATGGATCGACATAGGGACTCCAAGTGTATCGTTTCTTGTGGCTTTAGATACTG 358
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 ACTACACATGGATCGACATAGGGACTCCGAGTGTATCGTTTCTTGTGGCTTTAGATACTG 358
Query 359 GAAGTAATCTACTTTGGATTCCTTGTAACTGTGTGCAATGTGCTCCTTTAACATCCACTT 418
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 GAAGTGATCTACTTTGGATTCCTTGCAACTGTGTGCAATGTGCTCCTTTAACATCCACTT 418
Query 419 ATTATAGCAGCCTGGCTACTAAAGATCTGAACGAGTATAATCCATCAAGTTCAAGCACCA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 ATTATAGCAGCCTGGCTACTAAAGATCTGAACGAGTATAATCCATCAAGTTCAAGCAGCA 478
Query 479 GCAAAGTCTTTCTGTGCAGCCATAAGCTGTGTGATTCTGCTTCAGATTGTGAGAGCCCAA 538
||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |
Sbjct 479 GCAAAGTCTTTCTGTGCAGCCATAAGCTGTGCGGTTCTGCTTCAGATTGTGATAGCCCGA 538
Query 539 AGGAGCAATGCCCTTATACTGTTAACTACCTTAGTGGAAACACCTCGAGCTCAGGATTAC 598
||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||| |||
Sbjct 539 AGGAGCAATGCCCTTATACTGTTAAATACCTTAGTGGAAATACCTCTAGCTCGGGACTAC 598
Query 599 TTGTTGAAGACATCTTGCATCTTACATATAATACTAACAATAGACTGATGAATGGTTCCT 658
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 TTGTTGAAGACATCTTGCATCTTACATATAATACTAACAATAGACTCATGAATGGTTCCT 658
Query 659 CCTCTGTTAAGGCTCGAGTTGTTATAGGATGTGGTAAGAAGCAAAGTGGGGACTACTTGG 718
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 659 CCTCTGTCAAGGCTCGAGTTGTTGTAGGATGTGGTAAGAAGCAAAGTGGGGACTACTTGG 718
Query 719 ATGGGGTTGCCCCTGATGGTTTGATGGGTTTAGGACCTGCAGAAATCTCGGTTCCAAGTT 778
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATGGGGTTGCTCCTGATGGTTTGATGGGTTTAGGACCTGCAGAAATCTCGGTTCCAAGTT 778
Query 779 TTCTCTCTAAAGCGGGACTCATGAGAAACTCGTTCTCGTTGTGCTTTGATGAGGAAGATT 838
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 779 TTCTCTCTAAAGCAGGACTCATGAGAAACTCTTTCTCGTTGTGCTTTGATGAGGAAGATT 838
Query 839 CAGGGAGAATTTACTTCGGTGACATGGGACCGTCAATACAACAATCAACCCCATTCCTCC 898
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 839 CAGGGAGAATTTACTTCGGTGACATGGGACCGTCAATACAACAATCAGCACCATTCCTTC 898
Query 899 AGCTTGACAACAACAAATATTCAGGCTACATTGTGGGTGTGGAGGCTTGTTGTATTGGCA 958
|||||| | ||| | |||||||||||||||||||||||||||||| |||||||||||
Sbjct 899 AGCTTG---AGAAC--A-ATTCAGGCTACATTGTGGGTGTGGAGGCTTCTTGTATTGGCA 952
Query 959 ACTCGTGTCTGAAGCAGACGAGCTTCACAACTTTTATTGACAGTGGACAATCATTTACTT 1018
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 953 ACTCGTGTCTGAAGCAGACGAGCTTCACAACTTTTATTGATAGTGGACAATCATTTACTT 1012
Query 1019 ATCTACCGGAAGAAATATACAGAAAAGTTGCACTTGAGATTGACAGACATATAAACGCTA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1013 ATCTACCGGAAGAAATATACAGAAAAGTTGCACTTGAGATTGACAGACATATAAATGCTA 1072
Query 1079 CGAGTAAGAACTTCGAAGGTGTTTCATGGGAGTATTGCTATGAATCTAGTGCTGAGCCAA 1138
||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1073 CGAGTAAGAGCTTTGAAGGTGTTTCGTGGGAGTATTGCTATGAATCTAGTGTTGAGCCAA 1132
Query 1139 AGGTGCCAGCGATCAAACTCAAGTTTTCACACAATAACACATTCGTGATTCACAAACCTT 1198
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1133 GGGTACCAGCGATCAAACTCAAGTTTTCGCACAATAACACATTCGTGATTCACAAACCTT 1192
Query 1199 TGTTTGTATTCCAACAAAGTCAGGGGCTTGTTCAATTTTGCTTGCCTATCAGTCCTAGTG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TGTTTGTATTCCAACAAAGTCAGGGGCTTGTTCAATTTTGCTTGCCTATCAGTCCTAGTG 1252
Query 1259 GACAAGAAGGAATAGGAAGCATAGGACAGAACTACATGAGAGGGTATCGAATGGTTTTCG 1318
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1253 GACAAGAAGGCATAGGAAGCATAGGACAGAACTACATGAAAGGGTATCGAATGGTTTTCG 1312
Query 1319 ATAGAGAGAACATGAAGCTAGGCTGGTCACCCTCTAAATGTCAAGAAGATAAGATAGAGC 1378
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1313 ATAGAGAGAAAATGAAGCTAGGCTGGTCACCCTCTAAATGTCAAGAAGATAAAATAGAGC 1372
Query 1379 CGCCTCAAGCTTCACCGGGAAGCACTTCATCGCCAAATCCATTACCAACAGACGAGCAAC 1438
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1373 CGCCTCAAGCTTCACCGGGAAGCACTTCATCGCCATATCCATTACCAACAGAGGAGCAAC 1432
Query 1439 AAAGCAGAGGAGGCCATGCAGTTTCACCAGCAATTGCAGGTAAAACTCCATCCAAAACAC 1498
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 AAAGCAGAGG---CCATGCGGTTTCACCAGCAATTGCAGGTAAAACTCCATCCAAAACAC 1489
Query 1499 catcatcatcatc---atca---t-A-CA-GC-T-T-CTCTTCCATAATGAGATTATTCA 1546
||||||||||||| |||| | | || || | | ||||||||| |||||||||||||
Sbjct 1490 CATCATCATCATCCTCATCAAAATCATCATGCATCTTCTCTTCCATGATGAGATTATTCA 1549
Query 1547 ACTCACTTCTTCTACTACATTGGCTTGCCTCTTTAATGTAG 1587
|||| |||||||| ||||||||| ||| ||||||||||||
Sbjct 1550 ACTCTCTTCTTCTGCTACATTGGGTTGTTTCTTTAATGTAG 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5