BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10090.1
Length=1785
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350216 jgi|Araly1|350216|fgenesh1_pg.C_scaffold_6000809 2806 0.0
> Ahg350216 jgi|Araly1|350216|fgenesh1_pg.C_scaffold_6000809
Length=1782
Score = 2806 bits (1519), Expect = 0.0
Identities = 1697/1785 (95%), Gaps = 3/1785 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGATAATCCAGTGGAGAAAAAGTCGCGTTGTCGGTTTTTGGGGTTTGTGTTTAAC 60
||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGCGGATAATCCGGTGGAGAAAAAGTCGCGTTGTCGGTTTTTGGGATTTGTGTTTAAT 60
Query 61 AGACGTGGCTTGTGGTCCAAGAAATGTCCCGCGGACAATGGTAGCCATAAAAGCACAATG 120
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 61 AGACGTGGCTTGTGGTCCAAGAAATGTCCCGCAGACAATAGTAGCCATAAAAGCACAATG 120
Query 121 AGTAGCAGCAATGCCTCCACCGCAACCGCTACCACCGCTAACATTCAGTTCACCAAATCT 180
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTAGCAGCAATGCTTCCACCGCCACCGCTACCACCGCTAACATTCAGTTCACCAAATCT 180
Query 181 CCATGTACCGAATTTAACCCGAGGAAGCTTCAAGAAAATAAAGTTTTACCTGAGCCGATC 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 CCATGTACTGAATTTAACCCGAGGAAGCTTCAAGAAAATAAAGTTTTACCTGAGCCGGTA 240
Query 241 GAGGTCCAGAACCAGGTACAAAGACCTGTTTCAAAACCCTCATCGCATCAATACCCAAAT 300
||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 241 GAGATCCAGAACCAGGTACAGAGACCTATTTCAAAACCCTCATCGCATCAATACCCAAAT 300
Query 301 AACAATCAGTTAGGCAGTAATGGGAATAACCAACCAAGTAATAATAATCAAGGACCAGTC 360
||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 301 AACCATCAATTAGGCAGTAATGGGAATAACCAACCAAG---TAGTAATCAAGGACCAGTC 357
Query 361 CAACAACAACAAGCGAGGAAGGTTCCGAGGGAAGCAATTGGTTTATCAGGTGAGCTAGAG 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 358 CAACAACAACAAGCGAGGAAGGTTCCAAGGGAAGCAATTGGTTTATCAGGTGAGCTAGAG 417
Query 421 AGCATGATCATCGATAATCAGAAAGCAAAAGGGAATAATGGCTCTATGGTTCGAGCTTCT 480
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 418 AGCATGATCATGGATAATCAGAAAGCAAAAGGGAATAATTGCTCTATGGTTCGAGCTTCT 477
Query 481 TCAAGCAATGTGATGTTGTTTGGCAATCTTGGGAACTTGAAGCAGCCTGGACCATCGGGT 540
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 478 TCAAGCAATGTGATGTTGTTTGGCAATCTTGGGAACTTGAAGCAGCCCGGAGCATCAGGT 537
Query 541 GGGAATCAAACTACTATCCAGAACAATGGATACGGGAACACTGGTGGAGGGTATGGAGTG 600
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 538 GGGAATCAAACTACTATCCAGAACAATGGATACGGGAATACCGGTGGAGGGTATGGAGTG 597
Query 601 AAGAAGACGTTAGAGGAGGAAAGAAAAACATCGGTTGCACAAATACCGGCTTCAAATAAC 660
||||||||| | || ||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 598 AAGAAGACGATGGAAGAGGAAAGAAAAACATCGGTTACACCAATACCGGCTTCAAATAAT 657
Query 661 CAAGACCAGTCAGGATCTTTGTGTAGAGCGATTTCCACACGAATGGATCCCGAAACGTTA 720
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 658 CAAGATCAGTCAGGATCTTTGTGTAGGGCGATTTCCACACGAATGGACCCCGAAACGTTA 717
Query 721 AAGATAATGGGTAATGAAGATTATAAGAACGGGAATTTCGCAGAGGCGTTAGCCTTGTAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AAGATAATGGGTAATGAAGATTATAAGAACGGGAATTTCGCAGAGGCGTTAGCCTTGTAT 777
Query 781 GAAGCTGCAATATCCATCGATCCAAAAAAGGCTTCTTATCGTAGCAACAAAAGCGCGGCT 840
||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 778 GAAGCCGCAATATCCATCGATCCAAAAAAGGCTTCTTATCGAAGCAACAAGAGCGCAGCT 837
Query 841 TTAACGGCATTGGGGAGAATTCTGGAGGCGGTATTTGAGTGTAGAGAAGCAATCAGAATC 900
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 838 TTAACGGCATTGGGGAGAATTCTCGAGGCAGTATTTGAGTGTAGAGAAGCAATCAGAATC 897
Query 901 GATCCTCATTACCATAGAGCACACCATCGGTTGGCTAACTTGTACCTCAGGTTAGGAGAG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GATCCTCATTACCATAGAGCACACCATCGGTTGGCTAACTTGTACCTCAGGTTAGGAGAG 957
Query 961 GTGGAGAATTCAATATATCATTTCAAGCATGCGGGTCCAGAAGCTGACCAAGAAGACATT 1020
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 958 GTGGAGAAGTCAATATATCATTTCAAGCATGCAGGTCCAGAAGCTGACCAAGAAGACATT 1017
Query 1021 TCAAAGGCTAAAATGGTTCAAACACATCTCAACAAATGTACAGAGGCTAAGAGATTACGA 1080
||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| |||
Sbjct 1018 TCAAAAGCTAAAATGGTTCAAACACATCTCAACAAATGTACCGAGGCCAAAAGATTGCGA 1077
Query 1081 GATTGGAACACTTTGATCAAAGAAACAGAAAACACCATAACTACAGGCGCTGATGCAGCT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GATTGGAACACTTTGATCAAAGAAACAGAAAACACCATAACTACAGGCGCTGATGCAGCT 1137
Query 1141 CCTCAAGTATATGCATTGCAAGCAGAGGCCTTTTTGAAGACATACAGACATCAAGAGGCC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CCTCAAGTATATGCATTGCAAGCAGAGGCCTTTTTGAAGACATACAGACATCAAGAGGCC 1197
Query 1201 GACGATGCTTTGTCTAGATGCCCGGTTTTCGATGGGGAAATGAGCACAAAGTATTACGGA 1260
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1198 GACGATGCTTTGTCGAGATGCCCGGTTTTCGATGGGGAAATGAGCACAAAATACTACGGA 1257
Query 1261 TCGATCGGTTACGCTGGTTTCTTGGTCGTTTGGGCTCAAGTTCACATGGCATCCGGCAGA 1320
| ||||||||||| |||||||||||| | |||||||| ||||||||||| ||||||||
Sbjct 1258 CCCATCGGTTACGCCGGTTTCTTGGTCATCTGGGCTCAGGTTCACATGGCTTCCGGCAGG 1317
Query 1321 TTCGTAGAGGCTGTTGAGGCTATTCAACGAGCTGGCAAGTTGGATGGTAACAACAGGGAA 1380
|| |||||||| |||||||| ||||||||||| |||||| |||| |||||||||||||||
Sbjct 1318 TTTGTAGAGGCAGTTGAGGCGATTCAACGAGCGGGCAAGCTGGACGGTAACAACAGGGAA 1377
Query 1381 GTGAGTATGGTTCTCCGGCGTGCGCAGGCGGTTACAGCAGCGCGATCACGAGGAAACGAT 1440
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1378 GTGAGTATGGTTCTCAGGCGTGCGCAGGCGGTTACAGCAGCGCGATCACGAGGGAACGAG 1437
Query 1441 TTCTTTAAAGCCGGACGATTTCAAGAAGCTTGTACGGCTTATGGCGAAGGGTTAGACCAC 1500
|||||||||||| |||||||||||||||||||| | |||||||| ||||| |||||||||
Sbjct 1438 TTCTTTAAAGCCAGACGATTTCAAGAAGCTTGTGCAGCTTATGGTGAAGGCTTAGACCAC 1497
Query 1501 GACTCAAGAAACTCAGTCTTGCTATGTAACAGAGCGGCTTGCCTATCCAAAATGGGCCAG 1560
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1498 GACTCAAGAAACTCAGTCTTGCTATGTAACCGAGCGGCTTGCCTATCCAAAATAGGCCAG 1557
Query 1561 TTCGATAGAGCCGTTGAGGATACATCAGCGGCACTAGCCGTCCGTCCTGGCTACACCAAG 1620
||||||||||||||||||||||| || |||||||| || ||||||||| |||||||||||
Sbjct 1558 TTCGATAGAGCCGTTGAGGATACCTCCGCGGCACTTGCAGTCCGTCCTAGCTACACCAAG 1617
Query 1621 GCTCGACTCAGAAGAGCCGATTGTAACGCTAAGCTTGGGAATTGGGAATCGGCGGTTGGA 1680
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1618 GCTCGACTCAGAAGAGCCGATTGTAACGCTAAGCTTGGGAATTGGGAATCGGCGATTGGA 1677
Query 1681 GATTACGAGATATTGAGAAAAGAGACACCGGAAGATGAGGAAGTGATAAAAGGATTGTCG 1740
|||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1678 GATTACGAGATATTGAAAAAAGAGACACCGGAAGATGAGGAAGTGACCAGAGGATTGTCG 1737
Query 1741 GAGGCACAGAAGCAGCTCGTGAAACGCCGTGGCCATGACTCTTGA 1785
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1738 GAGGCTCAGAAGCAGCTCGTGAAACGCCGTGGCCATGACTCTTGA 1782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67000740955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5