BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10100.1 Length=1280 Score E Sequences producing significant alignments: (Bits) Value Ahg350217 jgi|Araly1|350217|fgenesh1_pg.C_scaffold_6000810 1711 0.0 Ahg481085 jgi|Araly1|481085|fgenesh2_kg.4__145__AT2G22190.1 442 3e-123 > Ahg350217 jgi|Araly1|350217|fgenesh1_pg.C_scaffold_6000810 Length=1107 Score = 1711 bits (926), Expect = 0.0 Identities = 1062/1124 (94%), Gaps = 23/1124 (2%) Strand=Plus/Plus Query 1 ATGTCAGCTAGTCAAAACATTGTCGTATCAGAGACTACAATG-TCAAGTATCATCCCcaa 59 |||||||||| ||||||| |||||||||||||||| |||| | ||||||||||| Sbjct 1 ATGTCAGCTACTCAAAACGTTGTCGTATCAGAGACCACAA-GATCAAGTATCAT------ 53 Query 60 caacaacaacaacaacaacaacTCTTCTTCACAGAAACTCCCTCCTTGTTTAATCTCAAT 119 | | | |||||||||||||||||| ||||| ||||||||| ||||||||||||| Sbjct 54 ---C--C--C--CAACAACAACTCTTCTTCTCAGAAGCTCCCTCCTGGTTTAATCTCAAT 104 Query 120 TTCCAAGAAAAAGCTTCTCAAGAACATCGACATCATCAATGGTGGTGGACAAAGAATCAA 179 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 105 TTCCAAGAAAAAGCTTCTCAAGAACATCGACATCATCAATGGTGGTGGACAGAGAATCAA 164 Query 180 CGCTTGGGTAGATTCAATGCGTGCTTCTTCTCCTACTCATCTCAAATCTCTTCCTTCTTC 239 ||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 165 CGCTTGGGTCGATTCAATGCGAGCTTCTTCCCCTACTCATCTCAAATCACTTCCTTCTTC 224 Query 240 TATCTCCACACAGCAACAACTCAACTCATGGATCATGCAACATCCTTCAGCACTAGAAAA 299 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 TATCTCCTCACAGCAACAACTCAACTCATGGATCATGCAACATCCTTCAGCACTAGAAAT 284 Query 300 ATTCGAACAGATAATGGAAGCTTCGAGAGGGAAACAAATCGTAATGTTTCTTGATTATGA 359 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 285 GTTCGAACAGATAATGGAAGCTTCGAGAGGAAAACAAATCGTAATGTTTCTTGATTATGA 344 Query 360 CGGTACTCTCTCTCCCATTGTTGATGATCCAGACAAAGCTTTCATGTCAAGCAAGATGAG 419 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 345 CGGTACTCTCTCTCCCATCGTTGATGATCCAGACAAAGCTTTCATGTCAAGCAAGATGAG 404 Query 420 AAGAACAGTGAAAAAACTGGCTAAGTGTTTCCCCACTGCTATAGTTACTGGTAGATGCAT 479 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 405 AAGAACAGTAAAAAAACTGGCTAAGTGTTTCCCCACTGCTATAGTTACTGGTAGATGCAT 464 Query 480 AGACAAGGTGTATAACTTTGTGAAGCTTGCTGAGCTGTATTATGCTGGAAGCCATGGCAT 539 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 465 AGACAAGGTGTATAATTTTGTGAAGCTTGCTGAGCTGTATTATGCTGGAAGCCATGGCAT 524 Query 540 GGACATTAAAGGTCCAGCAAAAGGCTTCTCCAGACACAAGAGGGTTAAACAGTCTCTTCT 599 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 525 GGACATTAAAGGCCCAGCAAAAGGCTTCTCTAGACACAAGAGGGTTAAACAGTCTCTTCT 584 Query 600 GTACCAACCAGCTAATGACTATCTTCCCATGATCGATGAAGTTTATAGACAACTCTTGGA 659 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 585 GTACCAACCAGCTAATGACTATCTTCCCATGATCAATGAAGTTTATAGACAACTCTTGGA 644 Query 660 AAAAACAAAATCGACTCCAGGAGCCAAAGTAGAAAACCACAAGTTTTGTGCTTCTGTGCA 719 |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 645 AAAAACCAAATCAACTCCGGGAGCCAAAGTAGAAAACCACAAGTTTTGTGCTTCTGTGCA 704 Query 720 CTTTCGCTGCGTCGATGAGAAGAAATGGAGCGAACTGGTTCTACAGGTTCGGTCGGTATT 779 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 705 CTTTCGCTGCGTCGATGAGAAGAAATGGAGCGAACTGGTTCTTCAGGTTCGGTCGGTATT 764 Query 780 AAA-GAAATTCCCTACGCTGCAACTGACCCAAGGTCGGAAGGTTTTCGAAATCCGTCCAA 838 ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 765 AAAAGAA-TTCCCTACGCTGAAACTGACCCAAGGTCGGAAGGTTTTCGAAATCCGTCCAA 823 Query 839 TGATTGAATGGGATAAAGGAAAGGCTCTTGAGTTCTTGTTAGAATCACTTGGATTTGGGA 898 |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 824 TGATTGAATGGGATAAAGGAAAAGCTCTTGAGTTCTTGTTAGAGGCACTTGGATTTGGGA 883 Query 899 ACACTAACAATGTTTTCCCGGTTTATATTGGTGACGATCGAACTGACGAAGATGCATTTA 958 ||||||||||||||| |||||||| || ||||| ||||| ||||||||||||||||||| Sbjct 884 GCACTAACAATGTTTTTCCGGTTTACATCGGTGATGATCGGACTGACGAAGATGCATTTA 943 Query 959 AGATGCTACGAGACAGAGGCGAAGGCTTTGGCATTCTTGTCTCCAAGTTTCCCAAGGATA 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 944 AGATGCTACGAGACAGAGGCGAAGGCTTTGGCATTCTTGTCTCCAAGTTTCCCAAGGATA 1003 Query 1019 CTGATGCTTCGTATTCTTTGCAAGATCCATCCGAGG----TGATGGATTTCTTACGACGA 1074 | |||||||||||||||||||||||||||||||||| ||||||||||||| ||| || Sbjct 1004 CCGATGCTTCGTATTCTTTGCAAGATCCATCCGAGGCAAGTGATGGATTTCTTGCGAAGA 1063 Query 1075 TTGGTGGAATGGAAACAAATGCAGCCAAGAATGTGAAATGATAA 1118 |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1064 TTGGTGGAATGGAAACAAATGCAGCCAAGAATGTGAAAGGATAA 1107 > Ahg481085 jgi|Araly1|481085|fgenesh2_kg.4__145__AT2G22190.1 Length=1244 Score = 442 bits (239), Expect = 3e-123 Identities = 611/786 (78%), Gaps = 43/786 (5%) Strand=Plus/Plus Query 327 AGGGAAACAAATCGTAATGTTTCTTGATTATGACGGTACTCTCTCTCCCATTGTTGATGA 386 ||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 353 AGGAAAACAAATAGTTATGTTTCTTGATTATGATGGTACTCTCTCTCCCATTGTTGATGA 412 Query 387 TCCAGA-CAAAGCTTTCATGTC-AAGCAAGATGAGAAGA-ACAGTGAAA-AAACTGGCTA 442 ||| || | | ||||||||||| ||| |||||| ||| | ||||| || ||||| || | Sbjct 413 TCCTGATCGA-GCTTTCATGTCCAAG-AAGATGCGAA-ATACAGT-AAGGAAACTTGCAA 468 Query 443 AGTGTTTCCCCACTGCTATAGTTACTGGTAGATGCATAGACAAGGTGTATAACTTTGTGA 502 ||||||| || || || ||||||| ||| ||||||| ||| ||||| | || ||||||| Sbjct 469 AGTGTTTTCCAACAGCCATAGTTAGTGGGAGATGCAGAGAGAAGGTTTCTAGTTTTGTGA 528 Query 503 AGCTTG-CTGAGCTGTATTATGCTGGAAGCCATGGCATGGACATTAAAGGTCCAGCAA-A 560 | || ||||||| || || |||||||| |||||||||||||| ||||| |||| | | Sbjct 529 AA-TTAACTGAGCTATACTACGCTGGAAGTCATGGCATGGACATCAAAGGACCAG-AGCA 586 Query 561 AGG-CTTCTCCAGACACAAGAGGGTTAAA-CAGTCTCTTCTGTACCAACCAGCTAATGAC 618 ||| | || | | |||||| | ||| ||||||||||| | ||||| || | ||| Sbjct 587 AGGAC--CTA-A-ATACAAGAAAGA-AAATCAGTCTCTTCTTTGTCAACCCGCGACTGAG 641 Query 619 TATCTTCCCA-TGATCGATGAAGTTTATAGACAACT-CTTGGAAAAAACAAAATCGACTC 676 | || ||||| ||||| | || ||||||| | |||| || | | ||||| ||||||| || Sbjct 642 T-TCCTCCCAGTGATCAACGAGGTTTATAAAAAACTACTCG-AGAAAACCAAATCGATTC 699 Query 677 CAGGAGCCAAAGTAGAAAACCACAAGTTTTGTGCTTCTGTGCACTTTCGCTGCGTCGATG 736 ||||||||||||| || ||| |||| |||||||| ||||| |||||||| ||||| || | Sbjct 700 CAGGAGCCAAAGTTGAGAACAACAAATTTTGTGCGTCTGTTCACTTTCGATGCGTAGAAG 759 Query 737 AGAAGAAATGGAGCGAACTGGTTCTA-CAGGTTCGGTCGGTATTAAAGAAATTCCCTACG 795 | || |||||||| || || | | | || ||||| || || || ||||| | ||| | | Sbjct 760 AAAATAAATGGAGTGA-CTTGACCAATCAAGTTCGATCAGTCTTGAAGAACTACCCCAAG 818 Query 796 CTGCAA-CTGACCCAAGGTCGGAAGGTTTTCGAAATCCGTCCAATGATTGAA-TGGGATA 853 || || || |||||||| | || || || || || |||||||| ||| || ||||||| Sbjct 819 CT-CATGCTTACCCAAGGAAGAAAAGTGTTGGAGATTCGTCCAATCATT-AAGTGGGATA 876 Query 854 AAGG-AAAGGCTCTTGAGTTCTTGTTAGAATCACTTGGATTTGGGAACACTAACA-ATGT 911 |||| |||| | || ||||| |||||||||||||| |||| | || || | |||| Sbjct 877 AAGGCAAAG-CACTCGAGTTTTTGTTAGAATCACTCGGATATAATAATTGTA-CTGATGT 934 Query 912 TTTCCCGGTTTATATTGGTGACGATCGAACTGACGAAGATGCATTTAAGATGCT-ACGAG 970 ||| || | |||||||| || ||||| || ||||||||||| |||||||| | | ||| Sbjct 935 TTTTCCTATATATATTGGAGATGATCGTACCGACGAAGATGCCTTTAAGATATTGA-GAG 993 Query 971 ACAGAGG-CGAAGG-CTTTGGCATTCTTGTCTCCAAGTTTCCCAA-GGATACTGATGCTT 1027 | | | | |||| ||| || |||||||| ||||| | | ||| ||| ||| |||||| Sbjct 994 ATAAAAAAC-AAGGTCTT-GGAATTCTTGTGTCCAAATA-CGCAAAGGAGACTAATGCTT 1050 Query 1028 CGTATTCTTTGCAAGATCCATCCGAGGTGATGGATTTCTTACGA-CGATTGGTGGAATGG 1086 | |||||||||||||| ||| ||||| |||||||| ||| || || |||||||| ||| Sbjct 1051 CTTATTCTTTGCAAGAGCCAGATGAGGTTATGGATTTTTTA-GAACGTTTGGTGGACTGG 1109 Query 1087 AAACAA 1092 |||||| Sbjct 1110 AAACAA 1115 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47844260835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5