BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10100.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350217 jgi|Araly1|350217|fgenesh1_pg.C_scaffold_6000810 1711 0.0
Ahg481085 jgi|Araly1|481085|fgenesh2_kg.4__145__AT2G22190.1 442 3e-123
> Ahg350217 jgi|Araly1|350217|fgenesh1_pg.C_scaffold_6000810
Length=1107
Score = 1711 bits (926), Expect = 0.0
Identities = 1062/1124 (94%), Gaps = 23/1124 (2%)
Strand=Plus/Plus
Query 1 ATGTCAGCTAGTCAAAACATTGTCGTATCAGAGACTACAATG-TCAAGTATCATCCCcaa 59
|||||||||| ||||||| |||||||||||||||| |||| | |||||||||||
Sbjct 1 ATGTCAGCTACTCAAAACGTTGTCGTATCAGAGACCACAA-GATCAAGTATCAT------ 53
Query 60 caacaacaacaacaacaacaacTCTTCTTCACAGAAACTCCCTCCTTGTTTAATCTCAAT 119
| | | |||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 54 ---C--C--C--CAACAACAACTCTTCTTCTCAGAAGCTCCCTCCTGGTTTAATCTCAAT 104
Query 120 TTCCAAGAAAAAGCTTCTCAAGAACATCGACATCATCAATGGTGGTGGACAAAGAATCAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 105 TTCCAAGAAAAAGCTTCTCAAGAACATCGACATCATCAATGGTGGTGGACAGAGAATCAA 164
Query 180 CGCTTGGGTAGATTCAATGCGTGCTTCTTCTCCTACTCATCTCAAATCTCTTCCTTCTTC 239
||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 165 CGCTTGGGTCGATTCAATGCGAGCTTCTTCCCCTACTCATCTCAAATCACTTCCTTCTTC 224
Query 240 TATCTCCACACAGCAACAACTCAACTCATGGATCATGCAACATCCTTCAGCACTAGAAAA 299
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TATCTCCTCACAGCAACAACTCAACTCATGGATCATGCAACATCCTTCAGCACTAGAAAT 284
Query 300 ATTCGAACAGATAATGGAAGCTTCGAGAGGGAAACAAATCGTAATGTTTCTTGATTATGA 359
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 285 GTTCGAACAGATAATGGAAGCTTCGAGAGGAAAACAAATCGTAATGTTTCTTGATTATGA 344
Query 360 CGGTACTCTCTCTCCCATTGTTGATGATCCAGACAAAGCTTTCATGTCAAGCAAGATGAG 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 345 CGGTACTCTCTCTCCCATCGTTGATGATCCAGACAAAGCTTTCATGTCAAGCAAGATGAG 404
Query 420 AAGAACAGTGAAAAAACTGGCTAAGTGTTTCCCCACTGCTATAGTTACTGGTAGATGCAT 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AAGAACAGTAAAAAAACTGGCTAAGTGTTTCCCCACTGCTATAGTTACTGGTAGATGCAT 464
Query 480 AGACAAGGTGTATAACTTTGTGAAGCTTGCTGAGCTGTATTATGCTGGAAGCCATGGCAT 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 AGACAAGGTGTATAATTTTGTGAAGCTTGCTGAGCTGTATTATGCTGGAAGCCATGGCAT 524
Query 540 GGACATTAAAGGTCCAGCAAAAGGCTTCTCCAGACACAAGAGGGTTAAACAGTCTCTTCT 599
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 525 GGACATTAAAGGCCCAGCAAAAGGCTTCTCTAGACACAAGAGGGTTAAACAGTCTCTTCT 584
Query 600 GTACCAACCAGCTAATGACTATCTTCCCATGATCGATGAAGTTTATAGACAACTCTTGGA 659
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 585 GTACCAACCAGCTAATGACTATCTTCCCATGATCAATGAAGTTTATAGACAACTCTTGGA 644
Query 660 AAAAACAAAATCGACTCCAGGAGCCAAAGTAGAAAACCACAAGTTTTGTGCTTCTGTGCA 719
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AAAAACCAAATCAACTCCGGGAGCCAAAGTAGAAAACCACAAGTTTTGTGCTTCTGTGCA 704
Query 720 CTTTCGCTGCGTCGATGAGAAGAAATGGAGCGAACTGGTTCTACAGGTTCGGTCGGTATT 779
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 705 CTTTCGCTGCGTCGATGAGAAGAAATGGAGCGAACTGGTTCTTCAGGTTCGGTCGGTATT 764
Query 780 AAA-GAAATTCCCTACGCTGCAACTGACCCAAGGTCGGAAGGTTTTCGAAATCCGTCCAA 838
||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 765 AAAAGAA-TTCCCTACGCTGAAACTGACCCAAGGTCGGAAGGTTTTCGAAATCCGTCCAA 823
Query 839 TGATTGAATGGGATAAAGGAAAGGCTCTTGAGTTCTTGTTAGAATCACTTGGATTTGGGA 898
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 824 TGATTGAATGGGATAAAGGAAAAGCTCTTGAGTTCTTGTTAGAGGCACTTGGATTTGGGA 883
Query 899 ACACTAACAATGTTTTCCCGGTTTATATTGGTGACGATCGAACTGACGAAGATGCATTTA 958
||||||||||||||| |||||||| || ||||| ||||| |||||||||||||||||||
Sbjct 884 GCACTAACAATGTTTTTCCGGTTTACATCGGTGATGATCGGACTGACGAAGATGCATTTA 943
Query 959 AGATGCTACGAGACAGAGGCGAAGGCTTTGGCATTCTTGTCTCCAAGTTTCCCAAGGATA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 AGATGCTACGAGACAGAGGCGAAGGCTTTGGCATTCTTGTCTCCAAGTTTCCCAAGGATA 1003
Query 1019 CTGATGCTTCGTATTCTTTGCAAGATCCATCCGAGG----TGATGGATTTCTTACGACGA 1074
| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct 1004 CCGATGCTTCGTATTCTTTGCAAGATCCATCCGAGGCAAGTGATGGATTTCTTGCGAAGA 1063
Query 1075 TTGGTGGAATGGAAACAAATGCAGCCAAGAATGTGAAATGATAA 1118
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1064 TTGGTGGAATGGAAACAAATGCAGCCAAGAATGTGAAAGGATAA 1107
> Ahg481085 jgi|Araly1|481085|fgenesh2_kg.4__145__AT2G22190.1
Length=1244
Score = 442 bits (239), Expect = 3e-123
Identities = 611/786 (78%), Gaps = 43/786 (5%)
Strand=Plus/Plus
Query 327 AGGGAAACAAATCGTAATGTTTCTTGATTATGACGGTACTCTCTCTCCCATTGTTGATGA 386
||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 353 AGGAAAACAAATAGTTATGTTTCTTGATTATGATGGTACTCTCTCTCCCATTGTTGATGA 412
Query 387 TCCAGA-CAAAGCTTTCATGTC-AAGCAAGATGAGAAGA-ACAGTGAAA-AAACTGGCTA 442
||| || | | ||||||||||| ||| |||||| ||| | ||||| || ||||| || |
Sbjct 413 TCCTGATCGA-GCTTTCATGTCCAAG-AAGATGCGAA-ATACAGT-AAGGAAACTTGCAA 468
Query 443 AGTGTTTCCCCACTGCTATAGTTACTGGTAGATGCATAGACAAGGTGTATAACTTTGTGA 502
||||||| || || || ||||||| ||| ||||||| ||| ||||| | || |||||||
Sbjct 469 AGTGTTTTCCAACAGCCATAGTTAGTGGGAGATGCAGAGAGAAGGTTTCTAGTTTTGTGA 528
Query 503 AGCTTG-CTGAGCTGTATTATGCTGGAAGCCATGGCATGGACATTAAAGGTCCAGCAA-A 560
| || ||||||| || || |||||||| |||||||||||||| ||||| |||| | |
Sbjct 529 AA-TTAACTGAGCTATACTACGCTGGAAGTCATGGCATGGACATCAAAGGACCAG-AGCA 586
Query 561 AGG-CTTCTCCAGACACAAGAGGGTTAAA-CAGTCTCTTCTGTACCAACCAGCTAATGAC 618
||| | || | | |||||| | ||| ||||||||||| | ||||| || | |||
Sbjct 587 AGGAC--CTA-A-ATACAAGAAAGA-AAATCAGTCTCTTCTTTGTCAACCCGCGACTGAG 641
Query 619 TATCTTCCCA-TGATCGATGAAGTTTATAGACAACT-CTTGGAAAAAACAAAATCGACTC 676
| || ||||| ||||| | || ||||||| | |||| || | | ||||| ||||||| ||
Sbjct 642 T-TCCTCCCAGTGATCAACGAGGTTTATAAAAAACTACTCG-AGAAAACCAAATCGATTC 699
Query 677 CAGGAGCCAAAGTAGAAAACCACAAGTTTTGTGCTTCTGTGCACTTTCGCTGCGTCGATG 736
||||||||||||| || ||| |||| |||||||| ||||| |||||||| ||||| || |
Sbjct 700 CAGGAGCCAAAGTTGAGAACAACAAATTTTGTGCGTCTGTTCACTTTCGATGCGTAGAAG 759
Query 737 AGAAGAAATGGAGCGAACTGGTTCTA-CAGGTTCGGTCGGTATTAAAGAAATTCCCTACG 795
| || |||||||| || || | | | || ||||| || || || ||||| | ||| | |
Sbjct 760 AAAATAAATGGAGTGA-CTTGACCAATCAAGTTCGATCAGTCTTGAAGAACTACCCCAAG 818
Query 796 CTGCAA-CTGACCCAAGGTCGGAAGGTTTTCGAAATCCGTCCAATGATTGAA-TGGGATA 853
|| || || |||||||| | || || || || || |||||||| ||| || |||||||
Sbjct 819 CT-CATGCTTACCCAAGGAAGAAAAGTGTTGGAGATTCGTCCAATCATT-AAGTGGGATA 876
Query 854 AAGG-AAAGGCTCTTGAGTTCTTGTTAGAATCACTTGGATTTGGGAACACTAACA-ATGT 911
|||| |||| | || ||||| |||||||||||||| |||| | || || | ||||
Sbjct 877 AAGGCAAAG-CACTCGAGTTTTTGTTAGAATCACTCGGATATAATAATTGTA-CTGATGT 934
Query 912 TTTCCCGGTTTATATTGGTGACGATCGAACTGACGAAGATGCATTTAAGATGCT-ACGAG 970
||| || | |||||||| || ||||| || ||||||||||| |||||||| | | |||
Sbjct 935 TTTTCCTATATATATTGGAGATGATCGTACCGACGAAGATGCCTTTAAGATATTGA-GAG 993
Query 971 ACAGAGG-CGAAGG-CTTTGGCATTCTTGTCTCCAAGTTTCCCAA-GGATACTGATGCTT 1027
| | | | |||| ||| || |||||||| ||||| | | ||| ||| ||| ||||||
Sbjct 994 ATAAAAAAC-AAGGTCTT-GGAATTCTTGTGTCCAAATA-CGCAAAGGAGACTAATGCTT 1050
Query 1028 CGTATTCTTTGCAAGATCCATCCGAGGTGATGGATTTCTTACGA-CGATTGGTGGAATGG 1086
| |||||||||||||| ||| ||||| |||||||| ||| || || |||||||| |||
Sbjct 1051 CTTATTCTTTGCAAGAGCCAGATGAGGTTATGGATTTTTTA-GAACGTTTGGTGGACTGG 1109
Query 1087 AAACAA 1092
||||||
Sbjct 1110 AAACAA 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5