BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10110.1
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487837 jgi|Araly1|487837|fgenesh2_kg.6__971__AT5G10110.1 1716 0.0
> Ahg487837 jgi|Araly1|487837|fgenesh2_kg.6__971__AT5G10110.1
Length=1267
Score = 1716 bits (929), Expect = 0.0
Identities = 1171/1283 (91%), Gaps = 35/1283 (3%)
Strand=Plus/Plus
Query 9 TGATTTCGAAAAACGCGAGTCCaaaaaaaGAAAATCGAGATCGGAAACTCCGCACGGTTC 68
|||||||||||||||||||| ||||| |||| |||||||||||||||||| |||||||||
Sbjct 2 TGATTTCGAAAAACGCGAGT-CAAAAGAAGAGAATCGAGATCGGAAACTCTGCACGGTTC 60
Query 69 CCGCCTCAACCAAATCAAAAACCCTAATTTCCCCACCAATCAGATCCTCCACAATTATCC 128
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 61 CCGCCTCAACCAAATCAAAAACCCTAATTTTCTCACCAATCAGATCCTCCACAATTATCC 120
Query 129 CACCGACGAATCCTATCAATCTCTCTAGATGACTGAAGATAGCAGCAAATCAGTGTCGGA 188
|||||||||| ||| |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 121 CACCGACGAACCCTGTCAATCTCTCTAGATGACTGAAGATAGCAGCAAAACAATGTCGGA 180
Query 189 -ACAAACCCGACCCGTTTTGAGTGATTTGACGAATCTTCCAAAG-AAAAGAGGGATTTCA 246
| |||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct 181 GA-AAACCCGACCTGTTTTGGGTGATTTGACGAATCTTCC-AAGCAAAAGAGGGATTTCA 238
Query 247 TCGATTTTGGGTGATTTGCTTGATGAATCTGGTAAGACCGTTGCTCATGAAGTTTCAAAA 306
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 239 TCGATTTTGGGTGATTTGCTTGATGAATCTGGTAAGACCATTGCTCATGAAGTTTCAAGA 298
Query 307 GAGAAGTTTTCAAAGAGGTTGTGTTTAGTCGTAGATGATTTGGTTAAGGAAAATGCTACA 366
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 299 GAGAAGTTTTCGAAGAGGTTGTGTTTAGTTGTAGATGATTTGGTTAAGGAAAATGCTAGA 358
Query 367 CCTTTGGATACAATTCAAGGGTCTTGTTCGTTTGAT-AAGAATACTTCTGGTGATGCTGT 425
||||||||||||||| || |||||| |||||||||| || ||||||||||||||| ||||
Sbjct 359 CCTTTGGATACAATTGAAAGGTCTTCTTCGTTTGATCAA-AATACTTCTGGTGATTCTGT 417
Query 426 TGAC--A-AAGAA---GA-G--TATCATGATGCTGTAATGGAATTCTCCAGTGGAGATTG 476
|||| | ||||| || | |||||||||||||| ||||||||||||||||| ||| |
Sbjct 418 TGACAAAGAAGAATCTGAGGAATATCATGATGCTGTGATGGAATTCTCCAGTGGTGATGG 477
Query 477 CAAAGCATTGAAGGAAAGCAAGTCTATACAGATCTATTTTGAACCTGGTGATAGAGACGG 536
|||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 478 CAAAGCTTTGAAGGAAAGCAAGTCTGTACAGATCTATTTTGAGCCTGGTGATAGAGACGG 537
Query 537 TGCACGAGAGTTAAACGCAGCTGCTAATGCGGATCAAACCGATGTTACTGGTGGAGAAGG 596
|||||||||||||| ||| |||||||||||| ||||||||||||| ||||| |||||
Sbjct 538 TGCACGAGAGTTAAGCGCGGCTGCTAATGCGAATCAAACCGATGTCCCTGGT---GAAGG 594
Query 597 CTTGGCTTTATCTTTGTTAACTAGCGATACCGAGAGCCGGAATCTACTGAAGACTGGGAA 656
||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 595 CTTGGCTTTATCTCTGTTACCTAGCAATACCGAGAGCAGGAATCTACTGAAGACTGGGAA 654
Query 657 GGAGTTGTCTGATTGTCAGAATTTGAGATCATTTGAAATGAGTAGATGCTCCAATGTTAA 716
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 655 GGAGTTGTCTGATTGTCAGAATTTGAGATCATTTGAAATGAGTAGATGCTCGAATGTTAA 714
Query 717 GAATAAGGAGCATGTGAATCTGAATACAGGAGATGACTTGCTTAGATCATGCTGTTGTTC 776
| ||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||||
Sbjct 715 CAGTAAGGAGCATGTGAATCTGAACACAGGAGATGACTTGCTAAAATCTTGCTGTTGTTC 774
Query 777 ATTCTGTCTC-ACAGCTTCGTATATTTGGTCAGATCTTAATTACCAGGATAGCAAAGGAC 835
|||||||||| || ||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 775 ATTCTGTCTCCAC-GCTTCGTATATGTGGTCAGATCTTAATTACCAGGATACCAAAGGTC 833
Query 836 GATTATCCGCCATGAAGAAGAGTCAGAAAGCAGCTAGCAACTTGATTCAAGGGAATGTTA 895
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 834 GATTATCCGCTATGAAGAAGAGTCAGAAAGCAGCTAGCAACTTGATTCAAAGGAATGCTA 893
Query 896 AAGAAAGATCTACAGATTTTCATGCCACGGGAAACTCAGTT--T-CTGCAAAACAAGAAT 952
| |||||| |||| |||||||||| ||||| |||||| ||| | |||||||||||||||
Sbjct 894 AGGAAAGACCTACGGATTTTCATGTCACGGAAAACTCCGTTAGTTCTGCAAAACAAGAAT 953
Query 953 CCAAGCTCATGGCCCAGTGGAGGTCGCTCTTTCTTAGCATGGGCGATATCCTCAG-TGAA 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 954 CCAAGCTCATGGCCCAGTGGAGGTCGCTCTTTCTTAGCATGGGCGATATCCTG-GCTCAA 1012
Query 1012 GAGAGTAGCCACCTTCAAAACAGCTTTGTGAGAATGAAAAAATTGCGAGACGATTGCAAG 1071
|||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |
Sbjct 1013 GAGAGTAGCCACCTTCAAAATAGCTTTGTGAGGATGAAAAAATTGCGAGAAGATTGCAGG 1072
Query 1072 ATGGATTTAGAGAGAGCAATGAAAAAACCTCAACAACACAACACCCAGTAAGTACTCTTA 1131
|||||| ||||||||||||||||| |||| || | ||||||||||||||| |||| | |
Sbjct 1073 ATGGATGTAGAGAGAGCAATGAAATCACCT-AA-A-CACAACACCCAGTAACTACT-TGA 1128
Query 1132 -CACATACTGTTATGAATCCAACTTCTCTTTCTGGAAATTTTTATAAGTATCTGGATGCA 1190
|| | | ||| ||||||| |||||||||||||| ||||| | || ||||||||||||
Sbjct 1129 TCAAACATTGTAATGAATCGAACTTCTCTTTCTGAAAATT---ACAA-TATCTGGATGCA 1184
Query 1191 ATGTATAGATGCTTAAAATCGTAAATGATTATGGATGTGTGCAACTATTGTTGGGGTTGT 1250
||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||||
Sbjct 1185 ATGTATAGATGCTTAAAATCGTAAATGGGTATGTATGAGTGCAACTATTGTTGGTGTTGT 1244
Query 1251 TAAGTTCTTCTATCAAACTCCTT 1273
|||||||||||||||||||||||
Sbjct 1245 TAAGTTCTTCTATCAAACTCCTT 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50246004606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5