BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10120.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487838 jgi|Araly1|487838|fgenesh2_kg.6__972__AT5G10120.1 2106 0.0
Ahg496732 jgi|Araly1|496732|fgenesh2_kg.8__2548__AT5G65100.1 568 5e-161
> Ahg487838 jgi|Araly1|487838|fgenesh2_kg.6__972__AT5G10120.1
Length=1398
Score = 2106 bits (1140), Expect = 0.0
Identities = 1329/1418 (94%), Gaps = 22/1418 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGAAGTCGAAGAATTGGAACCACTTAGTCCAATGGACGATGAAGAAGAAGAGATA 60
||||||||||| ||||||||||||||||||||||| || || ||||| |||||||| ||
Sbjct 1 ATGGTGGAAGTAGAAGAATTGGAACCACTTAGTCCGATTGAAGATGAGGAAGAAGAAATC 60
Query 61 AGCTATGATGACCTCAAAAGACGCATGTGGAAAGACCGAAACCTCATGGaaaaaaaGCTC 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 AGCTATGATGACCTCAAAAGACGCATGTGGAAAGACCGAAACCTCATGG---AAAAGCTC 117
Query 121 AAGCAACAGAAACGACACAGCAACGACGTCGTTTCGTTTACAACACACCGAGCCGAAGCT 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 118 AAGCAACAGAAACGACACAGCAAGGACGTCGTTTCGTTTACAACACACCGAGCCGAAGCG 177
Query 181 TCACGGCGCAAGAAGATGGCTCGTTCTCAAGATTCAGTGTTGAAGTACATGATGAAGATC 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 178 TCACGGCGCAAGAAGATGGCTCGTTCTCAAGATTCGGTGTTGAAGTACATGATGAAGATC 237
Query 241 ATGGAGGTGTGTAAAGCTAAAGGTTTTGTATACGGAATTGTACCGGAAAAGGGTAAACCA 300
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 238 ATGGAGGTGTGTAAAGCGAAAGGGTTTGTCTACGGAATTGTACCGGAAAAGGGTAAACCA 297
Query 301 ATAACCGGTTCTTCCGATAGCTTAAGACGTTGGTGGAAAGAAAACGTTCAGTTCGACCAA 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATAACGGGTTCTTCCGATAGCTTAAGACGTTGGTGGAAAGAAAACGTTCAGTTCGACCAA 357
Query 361 AACGCTCCAGACGCTATCACAGATTACTTAGCACTCGCGGCTGCTGCTGCTGCAGCAGAG 420
|||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct 358 AACGCTCCAGACGCTATCACTGATTACTTAACACTCGCGGCTGCGGCTGCTGCAGCAGAG 417
Query 421 CTAATCGATAAGTCCTCATCATCCTCGAGCTTATTACACATGTTACAGGAACTGCAAGAC 480
|||||||||||||| |||||||| ||||||||| ||||||||||||| || || ||||||
Sbjct 418 CTAATCGATAAGTCTTCATCATCATCGAGCTTACTACACATGTTACAAGAGCTACAAGAC 477
Query 481 ACGACACTAGGGTCGTTACTATCAGCGTTAATGCAACATTGCATGCCGCCACAGCGGCGG 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACGACTCTAGGGTCGTTACTATCAGCGTTAATGCAACATTGCATGCCGCCACAGCGGCGG 537
Query 541 TTTCCGTTAGAGAAAGGAATTGCTCCGCCATGGTGGCCGACGGGGACGGAGCTTTGGTGG 600
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 538 TTTCCGTTAGAGAAAGGAATCGCTCCGCCATGGTGGCCGACGGGTACGGAGCTTTGGTGG 597
Query 601 GGAGAACAAGGAGCGGCACATGAGCACGGTGCACCGCCATATC-GAAAGCCGCACGATTT 659
||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 598 GGAGAGCAAGGAGCGGCACATGAGCACGGTGCGCCGCCATA-CAGAAAGCCGCACGATTT 656
Query 660 GAGAAAATCTTGGAAAGTTAGTGTTCTCGCGGCTGTGATTAAACACATGTCGCCGAATTT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GAGAAAATCTTGGAAAGTTAGTGTTCTCGCGGCTGTGATTAAACACATGTCGCCGAATTT 716
Query 720 GGGAAGAGTGAGACGTCTGGCGAGACAATCTAAAAGTTTGCAAGATAAAATGATGGCTAA 779
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 717 GGGAAGAGTGAGACGTCTCGCGAGACAATCTAAAAGTTTGCAAGATAAGATGATGGCTAA 776
Query 780 AGAGACTGATACTTGGTCTCGTGTCTTAAACCAAGAAGAAGCTCTTCTCAATATCAAAGA 839
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGAGACCGATACTTGGTCTCGAGTCTTAAACCAAGAAGAAGCTCTTCTCAATATCAAAGA 836
Query 840 CCTCAAGATCTCGGAAGATCAGGACGATCAAGAATCGTCGGGGTCTAAGAGAAAAAGTGA 899
|||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||
Sbjct 837 CCTCAAGATCTCGGAAGACCA--A-GATCAAGAATCGTCGGGGTCTAAGAGAAAGGGTGA 893
Query 900 GTCTATGGAACCGTCTAAGAGTGTTTACACTTGCCAAAACTCGAGTTGTCCTAAAAGTGA 959
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ATTTATGGAACCGTCAAAGAGTGTTTACACTTGCCAAAACTCGAGTTGTCCTAAAAGTGA 953
Query 960 TGTGAGTTTTGGATTCGGGGACAAGAACTCGAGGACGGGTCATGAGATCCAGTGTCTTTA 1019
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 954 CGTGAGTTTTGGATTCGGGGACAAGAACTCAAGGACAGGTCATGAGATCCAGTGTCTATA 1013
Query 1020 TGGGTCGAACCAAGAACCGAGCCAGAGCGGTGAATATACATCTTCCTTGCTTGAAACGGT 1079
||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 1014 CGGGTCGACCCAAGAGCCGAGCCAGAGCGGTGAATATACACCTTCCATGCTTGAAATGGT 1073
Query 1080 TCCAAGTATTGTTACTAATTCGACTAGTGAAGATGATTATTACAATGTGAGCTCGCGTGC 1139
||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| ||||
Sbjct 1074 TCCAAGTATTGTTACTAGTTCGACTAGTGATGATGATTATTACAGTGTGAGCTCGAGTGC 1133
Query 1140 ACTGGACAAGCGAGATGATGATGATCATAGCATTAATGGGAATTGGATGGAATATTTCTG 1199
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1134 AATGGACAAGCGAGATGGTGATGATCATAGCATTAATGGGAATTGGATGGAATATTTTTG 1193
Query 1200 GTTAGAAAAGATGCAGCAGGAGTTTCATTGCTCTAGGAGATTCGAAGATGATGAGGGTAC 1259
||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1194 GTTGGAAAAGATGCAGCAGGAGTTACATTGCTCTAGGACATTCGAAGATGATGAGGGTAC 1253
Query 1260 TGGAACGGACTTTGA-CCAACTCACAGAATCTGATCGATCGGACAACGTGAATTTGAACC 1318
||||||||| | ||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 1254 TGGAACGGA-TATGAACCAGTTCACAGAATCTGATCGATCGGACAACGTGAA------CC 1306
Query 1319 AACTTACAAAATCTGATCGATCGGACAACGTGAACCGGAGTGCTTTTTCAGTTTGGGACA 1378
| | || ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1307 AG---A-AA--TCTGATCGATCGGACAACGTGAACCAGAGTAATTTTTCAGTTTGGGACA 1360
Query 1379 TGGGTTGCGAGGACAAAGACATATACATGTTCGATTAA 1416
|||||||||| ||||| |||||||||||||||||||||
Sbjct 1361 TGGGTTGCGAAGACAAGGACATATACATGTTCGATTAA 1398
> Ahg496732 jgi|Araly1|496732|fgenesh2_kg.8__2548__AT5G65100.1
Length=1623
Score = 568 bits (307), Expect = 5e-161
Identities = 584/713 (82%), Gaps = 37/713 (5%)
Strand=Plus/Plus
Query 168 CCGAGCCGAAGCTTCACGGCGCAAGAAGATGGCTCGTTCTCAAGATTCAGTGTTGAAGTA 227
|||||| ||||||||||| |||||||| |||||||| ||||||||||| |||||||||||
Sbjct 258 CCGAGCAGAAGCTTCACGCCGCAAGAAAATGGCTCGATCTCAAGATTCGGTGTTGAAGTA 317
Query 228 CATGATGAAGATCATGGAGGTGTGTAAAGCTAAAGGTTTTGTATACGGAATTGTACCGGA 287
|||||||||||| ||||| || || |||||| |||| || || |||||||| ||||||||
Sbjct 318 CATGATGAAGATAATGGAAGTTTGCAAAGCTCAAGGATTCGTTTACGGAATCGTACCGGA 377
Query 288 AAAGGGTAAACCAATAACCGGTTCTTCCGATAGCTTAAGACGTTGGTGGAAAGAAAACGT 347
||| |||||||| ||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 378 AAAAGGTAAACCGGTAACCGGTTCTTCAGACAGTTTAAGACGTTGGTGGAAAGAAAACGT 437
Query 348 TCAGTTCGACCAAAACGCTCCAGACGCTATCACAGATTACTTAGCACTCGCGGCTGCTGC 407
||| ||||| |||| ||||||| ||||| | | ||||||||| | | ||||||||| |
Sbjct 438 TCAATTCGATCAAACCGCTCCAAACGCTGTTTCTGATTACTTAACTTTAGCGGCTGCT-C 496
Query 408 TGCTGCAGCAGAGCTAATCGATAAGTCCTCATCATCCTCG-A-GC-T-TATTACACATG- 462
| | | | | | || || || || | | || | || | | | |||| ||||||
Sbjct 497 AG-TTAATCTCATC-AAACG--AA-TCTTTA-GAT-C-CGAATTCGTATATT-CACATGC 547
Query 463 TTACAGGAACTGCAAGACACGACACTAGGGTCGTTACTATCAGCGTTAATGCAACATTGC 522
|| || || || ||||||||||| |||| ||||| ||||||| || ||||||||||||
Sbjct 548 TT-CACGAGCTACAAGACACGACTTTAGGTTCGTTGTTATCAGCTTTGATGCAACATTGC 606
Query 523 ATGCCGCCACAGCGGCGGTTTCCGTTAGAGAAAGGAATT-GCTCCGCCATGGTGG-CCGA 580
| || ||||| |||||||||||||| || ||||| || |||||||| |||||| || |
Sbjct 607 GTACCCCCACAACGGCGGTTTCCGTTGGAAAAAGG-TTTGGCTCCGCCGTGGTGGCCCAA 665
Query 581 CGGGGACGGAGCTT-TGGTGGGGAGAACAAGGA---GCGGCACATGAGCACGGTGCACCG 636
| ||||||||| || ||||||||||| |||||| ||||| |||||| ||| | ||
Sbjct 666 C-GGGACGGAG-TTATGGTGGGGAGAGCAAGGAGCTGCGGCGTTTGAGCATGGTCCGCCT 723
Query 637 CCATATC-GAAAGCCGCACGATTTGAGAAAATCTTGGAAAGTTAGTGTTCTCGCGGCTGT 695
||||||| |||| |||||||||||||||||| |||||||||| || ||| | ||||||||
Sbjct 724 CCATATCGGAAA-CCGCACGATTTGAGAAAAGCTTGGAAAGTGAGCGTTTTAGCGGCTGT 782
Query 696 GATTAAACACATGTCGCCGAATTTGG-GAAGAGTGAGACGTCTGGCGAGACAATCTAAAA 754
|||||||||||||||||||||||||| || |||||||||| || |||||||| || ||
Sbjct 783 GATTAAACACATGTCGCCGAATTTGGAGA-GAGTGAGACGGCTCGCGAGACAGTCCAAGT 841
Query 755 GTTTGCAAGATAAAATGATGGCTAAAGAGACTGATACTTGGTCTCGTGTCTTAAACCAAG 814
||||||||||||| |||||||| |||||||| ||||| ||||||||||| || || ||||
Sbjct 842 GTTTGCAAGATAAGATGATGGCGAAAGAGACCGATACCTGGTCTCGTGTGTTGAATCAAG 901
Query 815 AAGAAGCTCTTCTCAATATCAAAGACCTCAAGATCTCGGAAGATC-AGGACGA 866
||||||||| ||||||| | | |||||||||||| || || | |||||||
Sbjct 902 AAGAAGCTCGTCTCAAT--C---G-CCTCAAGATCTCAGATGA-CGAGGACGA 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5