BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10130.1
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487839 jgi|Araly1|487839|fgenesh2_kg.6__973__AT5G10130.1 1136 0.0
> Ahg487839 jgi|Araly1|487839|fgenesh2_kg.6__973__AT5G10130.1
Length=762
Score = 1136 bits (615), Expect = 0.0
Identities = 717/766 (94%), Gaps = 7/766 (1%)
Strand=Plus/Plus
Query 54 AGTTTTCACATAATACACAAAACCCTTTCACTAATAACAATCTCCAAATGGCTAAATCAT 113
||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AGTTTTCACATAAAACAGAAAACCCCTTCACTAATAACAATCTCCAAATGGCTAAATCAT 60
Query 114 TTGTACCTCTCATCGCTGTGTTATGCGTTTTGGTT-CTCCCACTTGCAGCCATGGCGGTT 172
| |||||| | |||| |||||||| || ||| ||| ||||||||||| ||||||||||||
Sbjct 61 TGGTACCTGTGATCGTTGTGTTATTCG-TTTCGTTGCTCCCACTTGCGGCCATGGCGGTT 119
Query 173 GGAACGCCATTCCACATTGAAGGAAGTGTTTACTGCGACACTTGCCGCTTTGGATTCGAG 232
||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 120 GGAACACCATTCCACATTGAAGGATGTGTTTACTGCGACACTTGCCGTTTTGGATTCGAG 179
Query 233 ACAATCGCCACCCAATATATCCGCGGGGCAAGAGTGAGAATAGTATGCAAAGACAGAGTG 292
||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 ACAATTGCCACCAAATATATCCACGGGGCAAGAGTGAGAATAGTATGCAAAGACAGAGTG 239
Query 293 ACACTAAAATCGGAGTTGGTTGGGGTGGCGGTGACGGGACCTGATGGGAAATACAAAGTC 352
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 ACACTGAAATCGGAGTTGGTTGGGGTGGCGGTGACGGGACCCAATGGGAAATACAAAGTC 299
Query 353 GCCGTCAGAGGAGACCGACAGGACCAGCAATGTCTGGCGGAGCTTGTTCACAGTCCACTG 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 GCCGTCAGAGGAGACCGACAGGACCAGCAATGTCTGGCGGAGCTTGTTCACAGTCCTCTG 359
Query 413 TCCCGCTGCCAAGAGGCTGATCCTGGCAGAAGCACCGCTACCGTGATCCTCACGCGCTCC 472
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 TCCCGCTGCCAAGAGGCTGATCCTGGCAGAAGCACCGCCACCGTGATCCTCACGCGCTCC 419
Query 473 AACGGAGCCGCCTCTACTCGTCACTACGCCAACGCCATGGGTTTCTTCAGGGACGAACCG 532
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 420 AACGGAGCCGCCTCTACTCGCCACTTTGCCAACGCCATGGGTTTCTTCAGGGACGAACCG 479
Query 533 CTCCGTGGCTGCGCCGCTCTCCGCAAACGCTACCTCGCAGACGGCGATAACCGGGCTATT 592
||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 480 CTCCGTGGCTGTGCCGCTCTCCGCAAACGCTACCTCGCCGACGGCGATGTCCGGGCTATT 539
Query 593 TGAGTCATCTTATGTTCTTGATGAAACAGAACACAAAAGtttatttagagtttttattta 652
|||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 540 TGAGTCATCTTATGTTCTTGGTGAAACAGAACATAAAAGTTGATTTAGAGTTTTTATTTA 599
Query 653 ttt-ctattttattGTATTGTTGAGTCTCTA-AAGATGGTGAGACTATTTAGACATATCT 710
||| || ||||||| | |||||||||||||| || |||||||||||||||||||||||||
Sbjct 600 TTTTCTTTTTTATTATGTTGTTGAGTCTCTAGAA-ATGGTGAGACTATTTAGACATATCT 658
Query 711 AAGATAAACCATATAAAATAAAGTATTTGCAACCTTCaaaaaaaaaaaTCTCATGTCCTT 770
| || || | |||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 659 ACGA-AA-CTATATAAAATAAAGTATTTGCAACCTTCAAAAAAAAAAATCGCATATCCTT 716
Query 771 GGCAAGAAAGAGGAATTTGTTGTATGTTCTGTTACTTATGTAGGAT 816
|| |||||| |||||| ||||||||||||||||| |||||||||||
Sbjct 717 GGTAAGAAAAAGGAATGTGTTGTATGTTCTGTTATTTATGTAGGAT 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31337037774
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5