BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10140.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940484 jgi|Araly1|940484|scaffold_601028.1 1020 0.0
> Ahg940484 jgi|Araly1|940484|scaffold_601028.1
Length=631
Score = 1020 bits (552), Expect = 0.0
Identities = 606/632 (96%), Gaps = 4/632 (1%)
Strand=Plus/Plus
Query 92 CCCTCTCGGAG--AGAAGCCATGGGAAGaaaaaaaCTAGAAATCAAGCGAATTGAGAACA 149
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 CCCTCTCGGAGACAGAAGCCATGGGGAGAAAAAAACTAGAAATCAAGCGAATTGAGAACA 60
Query 150 AAAGTAGCCGACAAGTCACCTTCTCCAAACGTCGCAACGGTCTCATCGAGAAAGCTCGTC 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGTAGCCGACAAGTCACCTTCTCCAAACGTCGCAACGGTCTCATCGAGAAAGCTCGTC 120
Query 210 AGCTTTCTGTTCTCTGTGACGCATCCGTCGCTCTTCTCGTCGTCTCCGCCTCCGGCAAGC 269
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 121 AGCTTTCTGTTCTCTGTGACGCATCCGTCGCTCTTCTCGTCGTCTCTGCTTCCGGCAAGC 180
Query 270 TCTACAGCTTCTCCTCCGGCGATAACCTGGTCAAGATCCTTGATCGATATGGGAAACAGC 329
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 TCTACAGCTTCTCCTCCGGCGATAACCTGGTCAAGATCCTTGATCGATATGGGAAACAAC 240
Query 330 ATGCTGATGATCTTAAAGCCTTGGATCAT-CAGTCAAAAGCTCTGAACTATGGTTCACAC 388
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 241 ATGCTGATGATCTTAAAGCCTTGGAT-ATTCAGTCAAAAGCTCTGAACTATGGTTCACAC 299
Query 389 TATGAGCTACTTGAACTTGTGGATAGCAAGCTTGTGGGATCAAATGTCAAAAATGTGAGT 448
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 300 CATGAGCTACTTGAACTTGTGGAAAGCAAGCTTGTGGGATCAAATGTCAATAATGTGAGT 359
Query 449 ATCGATGCTCTTGTTCAACTGGAGGAACACCTTGAGACTGCCCTCTCCGTGACTAGAGCC 508
||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 360 GTCGATACTCTTGTTCAACTGGAGGAACACTTTGAGACTGCCCTCTCCGTAACTAGAGCC 419
Query 509 AAGAAGACCGAACTCATGTTGAAGCTTGTTGAGAATCTTAAAGAAAAGGAGAAAATGCTG 568
|||||||| ||||| |||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 420 AAGAAGACAGAACTAATGTTGAAGCTTGTTGAGAACCTCAAAGAAAAGGAGAAATTGCTG 479
Query 569 AAAGAAGAGAACCAGGTTTTGGCTAGCCAGATGGAGAATAATCATCATGTGGGAGCAGAA 628
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 AAAGAAGAGAACCAGGTTTTGGCTAGCCAGATGGAGAAGAATCATCATGTGGGAGCAGAA 539
Query 629 GCTGAGATGGAGATGTCACCTGCTGGACAAATCTCCGACAATCTTCCGGTGACTCTCCCA 688
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 GCTGAGATGGAGATTTCACCTGCAGGACAAATCTCCGACAATCTTCCGGTGACTCTCCCG 599
Query 689 CTACTTAATTAGCCACCTTAAATCGGCGGTTG 720
|| |||||||||||||||| ||||||||||||
Sbjct 600 CTGCTTAATTAGCCACCTTTAATCGGCGGTTG 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34386871134
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5