BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10150.1
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350224 jgi|Araly1|350224|fgenesh1_pg.C_scaffold_6000817 1812 0.0
> Ahg350224 jgi|Araly1|350224|fgenesh1_pg.C_scaffold_6000817
Length=1239
Score = 1812 bits (981), Expect = 0.0
Identities = 1167/1254 (93%), Gaps = 24/1254 (2%)
Strand=Plus/Plus
Query 32 ATGGAAGCTGTAAGATGCAGAAGAGGCAGAGAGAACAACAAAAGTCCAGAGAGGATCATA 91
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||
Sbjct 1 ATGGAAGCTGTAAGATGCAGAAGAGGCAGAGAGAGCAACAAAAGTCCAGAGAGGCTAATA 60
Query 92 AGGTCTTTG-A--ATCATCATCAACATGATGAAGAACTTGAAGAAGAGGTCAAGACAAAG 148
||||||||| | |||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 61 AGGTCTTTGAATCATCATCATCAACATGAAGAAGAACTTGAAGATGAGGTCAAGACTAAG 120
Query 149 AAACCCATTTTCCGAAGAGTCCAAGTTGTTTACTATCTCACAAGAAATGGCCACCTTGAA 208
|||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 121 AAACCCATTTTCAGAAGAGTCCAAGTTGTTTATTATCTCACTAGAAATGGCCACCTTGAA 180
Query 209 CATCCTCACTTCATCGAAGTCATTTCTCCGGTTAACCAGCCTCTCCGGTTAAGAGATGTG 268
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CACCCTCACTTCATCGAAGTCATTTCTCCGGTTAACCAGCCTCTCCGGTTAAGAGATGTG 240
Query 269 ATGAACCGGCTTACGATTCTGAGAGGGAAGTGCATGACATCACAATATGCTTGGTCGTGT 328
||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 ATGAACCGGCTTACGGTACTGAGAGGGAAGTGCATGCCATCACAATATGCTTGGTCGTGT 300
Query 329 AAAAGGAGCTATAGAAATGGATTTGTGTGGAATGACTTAGCAGAGAATGATGTGATTTAC 388
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 301 AAAAGGAGCTATAGAAATGGATTCGTTTGGAATGACTTAGCAGAGAACGATGTGATTTAC 360
Query 389 CCTTCTGACTGTGCTGAATATGTCTTGAAAGGATCTGAAATCACCGACAAATTTCAAGAA 448
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCTTCGGACTGTGCTGAGTATGTCTTGAAAGGATCTGAAATCACCGACAAATTTCAAGAA 420
Query 449 GTACATGTGAACAGACCATTGTCTGGTTCTATTCAAGAAGCTCCAAAAAGTCGACTTCTC 508
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 GTACATGTGAACAGACCATTGTCTGGTTCTATTGAAGAAGCTCCAAAAAGTCGACTTCTC 480
Query 509 AGGTCAAAACTCAAGCCTCAAAACCGAACGGCGTCGTTTGACGACGCAGAGCTCTACGTC 568
|||||||||||||| ||||||||| ||||| |||||||||| ||| ||||||||||||||
Sbjct 481 AGGTCAAAACTCAAACCTCAAAACAGAACGACGTCGTTTGATGACTCAGAGCTCTACGTC 540
Query 569 GGAGAAGAGGAAGAGGAAGAAGATGGAGAGTACGAGCTTTACGAAGAGAAAACGAGTTAC 628
|||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 541 ---------------GAAGAAGACGGAGAGTACGAACTTTACGAAGAGAAAACGAGTTAT 585
Query 629 ACATCTTCCACGACGCCTCAATCTCGCTGTTCTCGAGGCGTATCGACGGAGACAATGGAA 688
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||
Sbjct 586 ACATCTTCCACGACGCCGCAATCTCGCTGTTCTCGAGGCTTATCGACGGAGACAATCGAA 645
Query 689 TCCACCGAACAAAAACCGAACTTGACCAAGACAGAGCAAGATTTGCAAGTACGTTCTGAC 748
||||||||||||||||||| |||| ||||| ||| ||||||||||||||||| ||||||
Sbjct 646 TCCACCGAACAAAAACCGATCTTGGTCAAGAAAGAACAAGATTTGCAAGTACGATCTGAC 705
Query 749 TCGTCCGATTTGACTCGTTCCAACCCGGTGGTGAAGCCACGTCGACACGAAGTTTCGACG 808
|||||||| |||||||||||||||| ||| |||||||||||||||| ||| |||||||||
Sbjct 706 TCGTCCGAGTTGACTCGTTCCAACCAGGTTGTGAAGCCACGTCGACTCGACGTTTCGACG 765
Query 809 CGGGTCGAGGACGGAGATCCGGTGGAACCCGGATCGGGTCGTGGGTCGATGTGGCTGCAG 868
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 766 CGGGTCGAGGACGGAGATCCGGTGGATCCCGGATCGGGACGTGGGTCGATGTGGCTCCAG 825
Query 869 ATGATCTCTTGCGGTCACAT---CGCCACCAAGTACTACGCACCGAGTGTGATGAATCCG 925
|||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 826 ATGATCTCGTGCGGGCACATCGCCGCCACCAAGTACTACGCACCGAGCGTGATGAATCCG 885
Query 926 AGACAAAAAGAAGAGAACCTTCGAAAAGGAGTTTTGTGCAAGAACATTGTCAAGAAGACT 985
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 886 AGACAAAAAGAAGAGAATCTTCGAAAAGGAGTTTTATGCAAGAACATTGTGAAGAAGACC 945
Query 986 GTCGTAGATGACGAGCGTGAGATGATAAGGTTCATGTCGGAGAATCCAAGGTTCGGGAAT 1045
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 GTTGTAGATGACGAACGTGAGATGATAAGGTTCATGTCGGAGAATCCAAGGTTCGGGAAT 1005
Query 1046 CCTCAGGCGGAGGAGAAAGAGTATTTCAGCGGAAGCATCGTTGAGTCGGTGAGTCAGGAA 1105
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1006 CCACAGGCGGAGGAGAAAGAGTATTTCAGCGGAAGCATCGTCGAGTCGGTGAGTCAGGAA 1065
Query 1106 CGAGTCACGGCTGAACCATCGCTAAGACGATCCAACTCGTTCAACGAGGAAAGATCAAAG 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 CGAGTCACGGCTGAACCATCGCTAAGACGATCCAACTCGTTCAACGAGGAAAGATCAAAG 1125
Query 1166 ATTGTTGAGATGGCTAAGGAAACGA--A-GAAGAAAGAAGAAAGATCGATGGCGAAGGTG 1222
||| | |||||||||||||| |||| | |||| |||||||||||||||| | |||||||
Sbjct 1126 ATTATGGAGATGGCTAAGGAGACGATCAAGAAGGAAGAAGAAAGATCGATCGTGAAGGTG 1185
Query 1223 AAATGCATACCAAGAACGTGTTTAATGTCATCATCGAAGCAAATCAAGAAATaa 1276
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 AAATGTATACCGAGAACGTGTTTAATGTCATCATCGAAGCAAATCAAGAAATAA 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54964223535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5