BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10160.1
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487843 jgi|Araly1|487843|fgenesh2_kg.6__977__AT5G10160.1 1325 0.0
Ahg923453 jgi|Araly1|923453|scaffold_104734.1 361 6e-99
> Ahg487843 jgi|Araly1|487843|fgenesh2_kg.6__977__AT5G10160.1
Length=875
Score = 1325 bits (717), Expect = 0.0
Identities = 829/882 (94%), Gaps = 12/882 (1%)
Strand=Plus/Plus
Query 1 GTTGGAAGCTCTTTGAAAACTCCTCCCTTCGAATTCTCCGTCTCTTTCTCTCTG--TATC 58
||||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||
Sbjct 1 GTTGGAAGCTCTTTGAAAA--ACTCCCTTCGAATTCTCCGTCCCTTTCTCTCTGTCTCTC 58
Query 59 GAGATCGAATCGGCAATGGCTGCTTCAAGCTCCGTTTTCACAGTATCCCCGTCGCGAAAT 118
|||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 59 GAGATCGAATCGGCAATGGCTGCTTCCAGCTCCGTTTTCACAGCCTCTCCGTCGCGAAAT 118
Query 119 CTTGCAGCTATTCCTCTTCATCAGTCCCTATCTCCACCGTTGCTTAGATCCAGCTCCGTC 178
|||| | |||| |||||||||||||| || ||||| |||||| | |||||||||||||||
Sbjct 119 CTTGTATCTATCCCTCTTCATCAGTCGCTTTCTCCGCCGTTGATCAGATCCAGCTCCGTC 178
Query 179 GCGTTTCGTCCCAAACGAAGATCCAGCTCACTCGTCTTATGCTCAACTGATGAATCAAAG 238
||||||||||||||| || ||||||||||||||||||| ||||| | |||||||||||||
Sbjct 179 GCGTTTCGTCCCAAAAGACGATCCAGCTCACTCGTCTTGTGCTCCAGTGATGAATCAAAG 238
Query 239 AGCACCGCAGAGAAAGAGATCCCAATCGAACTAAGGTATGAGGCGTTTCCGACAGTGATG 298
|| ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 239 AGTACCACAGAGAAAGAGATCCCAATTGAACTCAGGTATGAGGCGTTTCCGACAGTGATG 298
Query 299 GACATCAATAAGATACAAGAGATTTTGCCTCACAGATTCCCATTTCTGTTAGTTGATAGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 GACATCAATAAGATACAAGAGATTTTGCCTCACAGATTCCCATTTCTGTTAGTGGATAGA 358
Query 359 GTGATAGAGTACACAGCTGGTGTATCTGCGGTAGCTATTAAAAACGTTACCATTAATGAC 418
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTGATAGAGTACACGGCTGGTGTATCTGCGGTAGCTATTAAAAACGTTACCATTAATGAC 418
Query 419 AATTTCTTTCCTGGGCATTTCCCTGAGAGACCTATAATGCCTGGAGTTCTCATGGTTGAG 478
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 419 AATTTCTTTCCTGGGCATTTTCCTGAGAGACCTATAATGCCTGGAGTTCTCATGGTTGAG 478
Query 479 GCAATGGCTCAAGTGGGAGGTATAGTGATGCTACAACCAGAAGTTGGCGGATCTAGAAGC 538
|| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 479 GCCATGGCTCAGGTGGGAGGTATAGTGATGCTACAACCAGAAGTGGGTGGATCTAGAAGC 538
Query 539 AACTTCTTCTTTGCTGGAATCGACAAAGTCAGATTCAGGAAGCCAGTGATTGCAGGTGAT 598
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 539 AACTTCTTCTTTGCTGGCATCGACAAAGTCAGATTCAGAAAGCCAGTGATTGCAGGTGAT 598
Query 599 ACGCTGGTGATGAGGATGACACTTGTGAAGTTGCAGAAGCGGTTTGGGATAGCGAAAATG 658
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACTCTGGTGATGAGGATGACGCTTGTGAAGTTGCAGAAGCGGTTTGGGATAGCGAAAATG 658
Query 659 GAAGGGAAAGCATATGTAGGGAACTCTGTGGTATGTGAAGGAGAGTTCTTGATGGCTATG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GAAGGGAAAGCATATGTAGGGAACTCTGTGGTATGTGAAGGAGAGTTCTTGATGGCTATG 718
Query 719 GGAAAAGAAGAGTGATCA-C--GCCTTTGTTTCTTTCTTCTTCATATGGGCCTTGTGGCT 775
|||||||||||||||||| | ||||||| ||| |||||||||| |||||||||||||
Sbjct 719 GGAAAAGAAGAGTGATCATCACGCCTTTG---CTT-CTTCTTCATACGGGCCTTGTGGCT 774
Query 776 GCTAATTAGTTGTCACATCCTAAGTTGAGTCTCATTTCTATCTTCAATTTATGATGTTTG 835
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 775 GCTAATTAGTTGTCACTTCCTAAGTTGAGTCTCATTTCTATCTTCAATCTATGATGTTTG 834
Query 836 TTTGCACATTATGATTATATTAAAAAAGCAACTTCAGTTTTA 877
|||||| ||||||||||||||||||| | ||||||| |||||
Sbjct 835 TTTGCATATTATGATTATATTAAAAAGGGAACTTCA-TTTTA 875
> Ahg923453 jgi|Araly1|923453|scaffold_104734.1
Length=483
Score = 361 bits (195), Expect = 6e-99
Identities = 249/275 (91%), Gaps = 4/275 (1%)
Strand=Plus/Plus
Query 61 GATCGAATCGGCAATGGCTGCTTCAAGCTCCGTTTTCACAGTATCCCCGTCGCGAAATCT 120
|||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||
Sbjct 9 GATCGAATCGGCAATGGCTGCTTCCAGCTCCGTTTTCACAACCTCTCCGTCGCGAAATCT 68
Query 121 TGCAGC-TATTCC-TCTTCATCAGTCCCTATCTCCACCGTTGCTTAGATCCAGCTCCGTC 178
| | | || ||| |||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 69 TTC-TCTTA-TCCGTCTTCATCAGTCGCTATCTCCACCGTTGATCAGATCCAGCTCCGTC 126
Query 179 GCGTTTCGTCCCAAACGAAGATCCAGCTCACTCGTCTTATGCTCAACTGATGAATCAAAG 238
|||||||||||||||||| |||||||||| |||||||| ||||| |||||||||||||||
Sbjct 127 GCGTTTCGTCCCAAACGACGATCCAGCTCGCTCGTCTTGTGCTCCACTGATGAATCAAAG 186
Query 239 AGCACCGCAGAGAAAGAGATCCCAATCGAACTAAGGTATGAGGCGTTTCCGACAGTGATG 298
|||| | ||||||||||||||||||| ||||| ||||| ||||| ||||| || ||||||
Sbjct 187 AGCAACACAGAGAAAGAGATCCCAATTGAACTCAGGTACGAGGCTTTTCCAACGGTGATG 246
Query 299 GACATCAATAAGATACAAGAGATTTTGCCTCACAG 333
|||||||||||||||||||||||||||||||||||
Sbjct 247 GACATCAATAAGATACAAGAGATTTTGCCTCACAG 281
Score = 141 bits (76), Expect = 9e-33
Identities = 108/122 (89%), Gaps = 8/122 (7%)
Strand=Plus/Plus
Query 370 CACAGCTGGTGTATCT---G--CGGTAGCTATTAAAAACGTTA--C-CATTAATGACAAT 421
|||||||||||||||| | |||||||||||||||||| || | ||| |||||||
Sbjct 277 CACAGCTGGTGTATCTGCGGTACGGTAGCTATTAAAAACGATACCCTCATGGTTGACAAT 336
Query 422 TTCTTTCCTGGGCATTTCCCTGAGAGACCTATAATGCCTGGAGTTCTCATGGTTGAGGCA 481
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 337 TTCTTTCCTGGGCATTTTCCTGAGAGACCTATAATGCCTGGAGTTCTCATGGTTGAGGTA 396
Query 482 AT 483
||
Sbjct 397 AT 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32823831537
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5