BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10170.1
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487844 jgi|Araly1|487844|fgenesh2_kg.6__978__AT5G10170.1 2854 0.0
Ahg943979 jgi|Araly1|943979|scaffold_700208.1 1173 0.0
> Ahg487844 jgi|Araly1|487844|fgenesh2_kg.6__978__AT5G10170.1
Length=1818
Score = 2854 bits (1545), Expect = 0.0
Identities = 1723/1806 (95%), Gaps = 24/1806 (1%)
Strand=Plus/Plus
Query 41 cctctctctctcAAGCATCAATTAATTCTCAAAGTCTTCCTTAGGCAAAAATGTTCATCG 100
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 18 CCTCTCTCTCTCAAGCATCAATTATTTCTCAAAGTTTTCCTTAGGCAAAAATGTTCATCG 77
Query 101 AAAGCTTCAAGGTTGAATCTCCGAACGTGAAGTACACCGAGAATGAGATCCACTCAGTGT 160
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 78 AAAGCTTCAAGGTTGAATCTCCGAACGTGAAGTACACCGAGAATGAGATCCATTCAGTGT 137
Query 161 ACGACTACCAAACCACTGAGCTTGTTCATGAGAACAAAAACGGTGCTTTTCAATGGACTG 220
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 138 ACGACTACCAAACCACTGAGCTTGTTCATGAGAACAAAAACGGTGCGTTTCAATGGACTG 197
Query 221 TGAAGCCAAAGACTGTGAAGTATGAGTTTAAGACCGACACTCATGTTCCCAAACTTGGAG 280
|||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 198 TGAAGCCAAAAACCGTGAAATATGAGTTTAAGACCGACACTCATGTTCCAAAACTTGGAG 257
Query 281 TAATGCTCGTTGGTTGGGGAGGCAACAATGGTTCTACACTTACCGCTGGTGTTATCGCCA 340
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 258 TAATGCTCGTTGGTTGGGGAGGCAACAATGGTTCTACGCTTACCGCTGGTGTTATCGCCA 317
Query 341 ATCGTGAGGGAATATCTTGGGCTACAAAGGAGAAAGTGCAACAAGCTAATTATTTCGGGT 400
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 318 ATCGTGAGGGAATATCTTGGGCTACGAAGGAGAAAGTGCAGCAAGCTAATTATTTCGGGT 377
Query 401 CATTAACCCAAGCATCTTCTATTCGGGTCGGGTCATTTAATGGTGAAGAAATCTATGCTC 460
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 378 CATTAACCCAAGCATCCTCTATTCGGGTCGGGTCTTTTAATGGTGAAGAAATCTATGCTC 437
Query 461 CTTTCAAAAGTCTTCTCCCCATGGTGAATCCGGAAGAAATTGTGTTTGGAGGATGGGACA 520
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 438 CTTTCAAAAGTCTTCTCCCCATGGTGAATCCTGAAGAAATTGTGTTTGGAGGATGGGACA 497
Query 521 TAAGTGACATGAACTTAGCAGACGCAATGGCACGAGCCAAGGTCCTAGACATCGACCTTC 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TAAGTGACATGAACTTAGCAGACGCAATGGCACGAGCCAAGGTCCTAGACATCGACCTTC 557
Query 581 AAAAGCAGATGCGTCCGTTCATGGAACACATGGTTCCACTCCCCGGAATCTTCGACCCAG 640
|||||||| |||||||||||||||| |||||||| |||||||| ||||| ||||||||||
Sbjct 558 AAAAGCAGCTGCGTCCGTTCATGGAGCACATGGTCCCACTCCCTGGAATATTCGACCCAG 617
Query 641 ATTTCATCGCAGCTAACCAAGGGTCACGTGCTAACCACGTGATCAAAGGCACCAAGAAAC 700
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 618 ATTTCATCGCAGCTAACCAGGGGTCGCGTGCCAACCACGTGATCAAAGGCACCAAGAAAC 677
Query 701 AACAACTCGAACAAGTCATCAAGGACATCAGGGAGTTCAAAGAGAAAAACAAAGTGGATA 760
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 AACAACTCGAGCAAGTCATCAAGGACATCAGGGAGTTCAAAGAGAAAAACAAAGTGGATA 737
Query 761 AAGTGGTGGTACTGTGGACGGCAAACACAGAAAGATACAGCAATGTGGTGGTTGGTCTTA 820
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 738 AAGTGGTGGTACTGTGGACGGCGAACACAGAAAGATACAGCAATGTGGTGGTTGGTCTTA 797
Query 821 ACGACACGACGGAGAATCTCATGTCATCTTTGGACAAGGATGAGGCTGAGATTTCTCCTT 880
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 798 ACGACACGACGGAGAATCTAATGTCATCTTTGGAAAAGGATGAGGCTGAGATTTCTCCTT 857
Query 881 CTACACTTTACGCCATTGCTTGTGTTCTTGAGAACGTTCCTTTTATCAATGGAAGTCCAC 940
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 858 CTACACTTTACGCCATTGCTTGTGTTCTTGAGAACGTTCCTTTCATCAATGGAAGTCCAC 917
Query 941 AAAACACTTTTGTCCCTGGGCTTATTGAATTAGCCATAAAGAGAAACTGCTTGATCGGTG 1000
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 918 AAAACACTTTTGTCCCTGGGCTTATTGAATTGGCCATTGAGAGAAACTGCTTGATCGGTG 977
Query 1001 GTGATGACTTCAAGAGTGGTCAGACCAAGATGAAGTCTGTCCTCGTCGATTTCCTTGTTG 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 GTGATGACTTCAAGAGTGGTCAGACCAAGATGAAGTCTGTCCTCGTCGATTTCCTTGTTG 1037
Query 1061 GCGCCGGAATCAAACCGACGTCGATTGTCAGTTACAACCATCTTGGGAACAACGACGGCA 1120
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1038 GTGCCGGAATCAAACCGACGTCGATTGTGAGTTACAACCACCTTGGGAACAACGACGGCA 1097
Query 1121 TGAACTTGTCAGCACCTCAAACATTCCGGTCAAAGGAGATATCGAAGAGCAATGTCGTGG 1180
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 TGAACTTGTCAGCGCCGCAAACATTCCGGTCAAAGGAGATATCGAAGAGCAATGTCGTGG 1157
Query 1181 ACGATATGGTTGGTAGCAACGGAATTTTGTACGAGCCTGGTGAACACCCTGACCACGTTG 1240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1158 ACGATATGGTTGGTAGCAACGGGATTTTGTACGAGCCTGGTGAACACCCTGACCACGTTG 1217
Query 1241 TGGTCATTAAGTATGTGCCATGTGTAGGAGACAGCAAGAGAGCAATGGATGAATACACAT 1300
||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||
Sbjct 1218 TGGTCATTAAGTATGTGCCATATGTAGGAGATAGCAAGAGAGCAATGGACGAGTACACAT 1277
Query 1301 CAGAGATATTCATGGGAGGGAAGAACACGATTGTGATGCACAACACTTGTGAAGACTCTC 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 CAGAGATATTCATGGGAGGGAAGAACACGATTGTGATGCACAACACTTGTGAAGACTCTC 1337
Query 1361 TCTTGGCTGCTCCAATTATTTTGGACCTTGTTCTTCTTGCTGAGCTCACTACTCGGATCC 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 TCTTGGCTGCTCCAATTATTTTGGACCTTGTTCTTCTTGCTGAGCTCACTACTCGGATCC 1397
Query 1421 AGTTCATGAGT-GAAAACGAGGGAAAGTTTCATTCTTTCCATCCGGTGGCTACTCTCCTA 1479
|||||||| | |||| |||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1398 AGTTCATG-GCCGAAACCGAGGGAAAGTTCCATTCTTTCCATCCGGTGGCTCCTCTCCTA 1456
Query 1480 AGTTACCTCTCAAAGGCACCACTGGTTCCTCCTGGCACGCCAGTTGTTAATGCTTTGTCG 1539
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1457 AGTTACCTCTCAAAGGCACCACTGGTCCCTCCTGGCACGCCAGTTGTGAATGCTTTGTCG 1516
Query 1540 AAACAGCGTGCAATGCTTGAGAACGTACTCAGAGCTTGTGTTGGACTTGCTCCTGAGAAC 1599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1517 AAACAGCGTGCAATGCTTGAGAACATACTCAGAGCTTGTGTTGGACTTGCTCCTGAGAAC 1576
Query 1600 AACATGATTCTCGAGTACAAGTGATCAAAGAGAC----C-AAT---TC-A--A-GACCCC 1647
|||||||||||||||||||||||||||||||||| | ||| || | | ||| |
Sbjct 1577 AACATGATTCTCGAGTACAAGTGATCAAAGAGACGAGACCAATCAATCGATCAAGACTCG 1636
Query 1648 CTTTCTTAGCTATGTT-GCTTTCTATGTTTAATAAATAATTACATTTCTAAAATGTAAGT 1706
||||||||||| | || ||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 1637 CTTTCTTAGCT-T-TTCGCTTTTTATGTTTATTTAATAATTACATTTCTAAAATGTAAGT 1694
Query 1707 GTTC-TTTTCTT-TGTCTTTCT--CTCATTTACAAATGTCATCTATGTGGTTTCGTTATC 1762
|||| ||||||| | | ||||| |||||||||||||||||||||| ||||||||||| |
Sbjct 1695 GTTCCTTTTCTTATTT-TTTCTTTCTCATTTACAAATGTCATCTATCTGGTTTCGTTACC 1753
Query 1763 TTCCCCAGCCAAATATGTAATGGTATCTCGCGCTGAATTGGGATTGTCTT-TCATCTCAT 1821
|| |||||||||||||||||||| |||||||||||||||| |||||||| | |||||||
Sbjct 1754 TTTTCCAGCCAAATATGTAATGGTGTCTCGCGCTGAATTGGAATTGTCTTCT-ATCTCAT 1812
Query 1822 TTCAAA 1827
||||||
Sbjct 1813 TTCAAA 1818
> Ahg943979 jgi|Araly1|943979|scaffold_700208.1
Length=1576
Score = 1173 bits (635), Expect = 0.0
Identities = 1268/1569 (81%), Gaps = 61/1569 (4%)
Strand=Plus/Plus
Query 87 AAAAATGTTCATCGAAAGCTTCAAGGTTGA-ATCTCCGAACGTGAAGTACACCGAGAATG 145
||||||||| || || |||||||| ||||| | | ||||||||||||||||| |||||||
Sbjct 17 AAAAATGTTTATTGAGAGCTTCAAAGTTGAGAGC-CCGAACGTGAAGTACACAGAGAATG 75
Query 146 AGATCCACTCAGTGTACGACTACCAAACCACTGAGCTTGTTCATGAG-A-A-CAAAAACG 202
|||| ||||| |||||||| ||| | || || ||| ||||||||||| | | || || |
Sbjct 76 AGATTCACTCTGTGTACGATTACGAGACGACGGAGGTTGTTCATGAGAAGACCATCAATG 135
Query 203 G-TGCTTTTCAATGGACTGTGAAGCCAAAGACTGTGAAGTATGAGTTT-AAGACCGACAC 260
| | || || |||| |||||||||||||||||| || || || ||| || ||||| |
Sbjct 136 GCAG-TTACCAGTGGATTGTGAAGCCAAAGACTGTCAAATACGA-TTTCAAAACCGATAT 193
Query 261 TCATGTTCCCAAACTT-GGAGTAATGCTCGTTGGTTGGGGAGGCAACAATGGTTCTACAC 319
|| ||| |||||| || || || ||||| || ||||||||||| |||||||| || || |
Sbjct 194 TCGTGTCCCCAAA-TTAGGGGTTATGCTTGTGGGTTGGGGAGGAAACAATGGATCAACTC 252
Query 320 TTACCGCTGGTGTTATCGCCAATC-GTGAGGGAATATCTTGGGCTACAAAGGAGAAAGTG 378
| || |||||||| || || || | || ||||| || ||||| || ||||| ||||||
Sbjct 253 TCACTGCTGGTGTCATTGCGAA-CAAAGAAGGAATCTCGTGGGCAACGAAGGACAAAGTG 311
Query 379 CAACAAGCTAATTA-TTTCGGGTCATTAACCCAAGCATCTTCTATTCGGGTCGGGTCATT 437
|||||||| ||||| ||| |||||| |||| |||||||| || ||||| ||||| || ||
Sbjct 312 CAACAAGCGAATTACTTT-GGGTCACTAACTCAAGCATCATCGATTCGTGTCGGATCCTT 370
Query 438 TAATGGTGAAGAAATCTATGCTCCTTTCAAAAGTCTTCTCCCCATGGTGAATCCGGAAGA 497
||| |||||||| ||||||||||||||||| ||||| || || |||||||||||||| ||
Sbjct 371 TAACGGTGAAGAGATCTATGCTCCTTTCAAGAGTCTCCTTCCAATGGTGAATCCGGATGA 430
Query 498 AATTGTGTTTGGAGGATGGGACATAAGTGACATGAACTTAGCAGACGCAATGGC-ACGAG 556
||||||||||||||||||| ||||||||||||||||||||||| || ||||| | |||
Sbjct 431 TGTTGTGTTTGGAGGATGGGATATAAGTGACATGAACTTAGCAGATGCCATGGCTA-GAG 489
Query 557 CCAAGGTCCTAGACATCGACCTT-CA-AAAGCAGATGC-GTCCGTT-CATGGA-ACACAT 611
||| ||| || || ||||| ||| || ||| ||| | | | || || |||||| | ||||
Sbjct 490 CCAGGGTTCTTGATATCGA-CTTGCAGAAA-CAGCT-CAGGCC-TTACATGGAGA-ACAT 544
Query 612 GGTTCCACTCCCCGGAATCTTCGACCCAGATTTCATCGCAGCTAACCAAGGGTCACGTGC 671
|| |||||||| || |||| ||| || ||||||||||| ||||| ||||||||||||||
Sbjct 545 TGTGCCACTCCCTGGGATCTACGATCCTGATTTCATCGCTGCTAATCAAGGGTCACGTGC 604
Query 672 TAACCACGTGATCAAAGGCACCAAGAAACAACAACTCGAACA-AGTCATCAAGGACATCA 730
|||||||||||||||||| |||||||| ||||| |||| || | ||||||||||||| |
Sbjct 605 TAACCACGTGATCAAAGGTACCAAGAAGGAACAAGTCGACCACA-TCATCAAGGACATGA 663
Query 731 GGGAGTTCAAAGAGAAAAA-CAAAGTGGATAAAGTGGTGGTACTGTGGACGGCAAACACA 789
||||||| || ||||| || || |||||||| || ||||| || |||||||| |||||
Sbjct 664 GGGAGTTTAAGGAGAAGAATCAG-GTGGATAAGGTTGTGGTTCTCTGGACGGCTAACACT 722
Query 790 GAAAGATACAGCAATGTGGTGGTTGGTCTTAACGACACGACGGAGAATCTCATGTCA-TC 848
|| | || ||||||||||| ||||| | ||||| || | ||||||||||||| | ||
Sbjct 723 GAGCGTTATAGCAATGTGGTCGTTGGGATGAACGATACAATGGAGAATCTCATGG-AGTC 781
Query 849 TTTGGACA-AGGATGAGGCTGAGATTTCTCCTTCTACACTTTACGCCATTGCTTGTGTTC 907
| |||| | || ||||||||||||| ||||||||||| ||||| || |||||||||||||
Sbjct 782 TGTGGATAGAG-ATGAGGCTGAGATCTCTCCTTCTACGCTTTATGCGATTGCTTGTGTTC 840
Query 908 TTGAGAACGTTCCTTTT-ATCAATGGAAGTCCACAAAACACTTTTGTCCCTGGGCTTATT 966
||||| | ||| || ||||||||||| || || ||||| ||||| || || || |||
Sbjct 841 TTGAGGG-GATCCCGTTCATCAATGGAAGCCCTCAGAACACCTTTGTTCCAGGTCTAATT 899
Query 967 GA-ATTAGCCATAAAGAGA-AACTGCTT-GATCGGTGGTGATGACTTCAAGAGTGGTCAG 1023
|| || || || | || | || || || ||||||||| ||||| ||||||||||||||
Sbjct 900 GATATG-GCGATCAGGA-ACAA-TGTTTTGATCGGTGGAGATGATTTCAAGAGTGGTCAA 956
Query 1024 ACCAAGATGAAGTCTGTCCTCGTCGATTTCCTTGTTGGCGCCGGAATCAAACCGACGTCG 1083
||||||||||| |||||| | || |||||||||||||| || |||||||| || || ||
Sbjct 957 ACCAAGATGAAATCTGTCTTGGTTGATTTCCTTGTTGGTGCAGGAATCAAGCCTACTTCA 1016
Query 1084 ATTGTCAGTTACAACCATCTTGGG-AACAACGACGGCATGAACTTGTCAGCACCTCAAAC 1142
||||| || ||||| || |||||| |||||||| || |||||| | ||||| || || ||
Sbjct 1017 ATTGTGAGCTACAATCA-CTTGGGGAACAACGATGGGATGAACCTCTCAGCTCCACAGAC 1075
Query 1143 ATTCCGGTCAAAGGAGATATCGAAGAGCAATGTCGTGGACGATATGGTTGGTAGCAACGG 1202
|||| | || |||||||| ||||| |||||||| |||||||||||||||| |||||||||
Sbjct 1076 ATTCAGATCTAAGGAGATCTCGAAAAGCAATGTTGTGGACGATATGGTTGCTAGCAACGG 1135
Query 1203 AATTTTGTACGAGCCTGGTGAACACCCTGACCACGTTGTGGTCATTAAGTATGTGCCATG 1262
|| | | |||||||| |||||||| ||||| ||||| ||||| |||||||| || |
Sbjct 1136 TATCCTCTTTGAGCCTGGGGAACACCCGGACCATGTTGTTGTCATCAAGTATGTACCCTA 1195
Query 1263 TGTAG-GAGACAGCAAGAGAGCAATGGATGAATACACATCAGAGATATTCATGGGAGGGA 1321
||| | | || || ||| |||| ||||| || |||||||||||||| |||||||||||||
Sbjct 1196 TGTTGCG-GATAGTAAGCGAGCGATGGACGAGTACACATCAGAGATCTTCATGGGAGGGA 1254
Query 1322 AGAACACGATTGTGATGCACAACACTTGTGAAGACTCTCTCTTGGCTGCTCCAATTATTT 1381
||||||| ||||| |||||||| || || || ||||||||||| ||||||||||| || |
Sbjct 1255 AGAACACAATTGTAATGCACAATACCTGCGAGGACTCTCTCTTAGCTGCTCCAATCATCT 1314
Query 1382 TGGACCTTGTTCTTCTTGCTGAGCTCA-CTACTC-GGATCCAGTTCATGAG-TGAAA-AC 1437
|||| |||||||| || || ||||||| | || | |||||||||||| | ||| |
Sbjct 1315 TGGATCTTGTTCTCCTCGCGGAGCTCAGC-AC-CAGGATCCAGTTCAA-ATCTGAGGGA- 1370
Query 1438 GAGGGAAAGTTTCATTCTTTCCATCCGGTGGCTACTC-TCCTAAGTTACCTCTCAAAGGC 1496
|||||||||||||||||||||||||| ||||| || | | || || |||||| | |||||
Sbjct 1371 GAGGGAAAGTTTCATTCTTTCCATCCTGTGGCCAC-CATACTCAGCTACCTCACCAAGGC 1429
Query 1497 ACCACTGGTTCCTCCTGGCACGCCAGTTGTTAATGCTTTGTCGAAACAGCGTGCAATGCT 1556
||| || || || || || || || || |||||||| ||||||| ||||| || |||||
Sbjct 1430 ACCGCTTGTGCCGCCGGGAACCCCGGTGGTTAATGCGCTGTCGAAGCAGCGGGCTATGCT 1489
Query 1557 TGAGAACGT-ACTCAGAGCTTGTGTTGGACTTGCTCCTGAGAACAACATGATTC-TCGAG 1614
|||||| | | | || || || ||||| || ||||| |||||||||||||| | | ||
Sbjct 1490 GGAGAACATTA-TGAGGGCATGCGTTGGGCTGGCTCCGGAGAACAACATGAT-CATGGAA 1547
Query 1615 TACAAGTGA 1623
| |||||||
Sbjct 1548 TTCAAGTGA 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70771675210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5