BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10180.1
Length=2417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940488 jgi|Araly1|940488|scaffold_601032.1 3439 0.0
> Ahg940488 jgi|Araly1|940488|scaffold_601032.1
Length=2116
Score = 3439 bits (1862), Expect = 0.0
Identities = 2030/2113 (96%), Gaps = 4/2113 (0%)
Strand=Plus/Plus
Query 20 AATGCTCAATCAAAGCTTCTTCATAGTTAAACTTCCACACAACGTCAAAACTCGAGAAGA 79
|||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1 AATGCTCAATCACAGCTTCTTCATAGTTAAACTTCCTCACAACGTCAAAAATCGAGAAGA 60
Query 80 AGATGAAAGAGAGAGATTCAGAGAGTTTTGAATCTCTCTCACATCAAGTTCTCCCAAACA 139
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGATGAAAGAGAGAGATTTAGAGAGTTTTGAATCTCTCTCACATCAAGTTCTCCCAAACA 120
Query 140 CTTCAAATTCAACACACATGATCCAGATGGCCATGGCCAACTCAGGTTCATCTGCAGCCG 199
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 CTTCAAATTCAACACACATGATCCAGATGGCCATGGCCAGCTCAGGTTCATCTGCAGCCG 180
Query 200 CACAAGCCGGTCAAGACCAGCCTGACCGGTCAAAGTGGCTGCTTGACTGTCCTGAACCAC 259
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CACAAGCCGGTCAAGACCAACCTGACCGGTCAAAGTGGCTGCTTGACTGTCCTGAACCAC 240
Query 260 CTAGCCCGTGGCATGAGCTCAAAAGACAAGTCAAAGGCTCTTTCCTAACCAAAGCCAAAA 319
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 241 CTAGCCCGTGGCATGAGCTCAAGAGACAAGTCAAAGGCTCTTTCCTAACCAAAGCCAGAA 300
Query 320 AGTTCAAGTCACTTCAAAAACAGCCTTTCCCAAAACAAATCCTCTCTGTCCTCCAAGCCA 379
||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 301 GGTTCAAGTCACTTCAAAAACAGCCTCTCCCAAAACGAATCCTCTCCATCCTCCAAGCCA 360
Query 380 TTTTCCCAATCTTCGGTTGGTGCAGAAACTATAAACTCACCATGTTCAAGAACGATCTCA 439
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 TTTTCCCAATCTTCGGTTGGTGCAGAAACTATAATCTCACCATGTTCAAGAACGATCTCA 420
Query 440 TGGCTGGTTTAACCCTCGCTAGCCTCTGCATTCCGCAGAGCATTGGTTATGCAACTCTTG 499
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 421 TGGCTGGTTTAACCCTCGCCAGCCTCTGCATTCCTCAGAGCATTGGTTATGCAACTCTTG 480
Query 500 CAAAGCTTGATCCTCAATATGGCCTATATACGAGTGTGGTACCACCATTGATATATGCAT 559
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 481 CAAAGCTTGATCCTCAATATGGCCTATATACGAGTGTCGTACCACCATTGATATACGCAT 540
Query 560 TGATGGGGACATCAAGAGAGATAGCAATCGGACCGGTGGCTGTAGTATCTCTTCTTATAT 619
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 TGATGGGGACATCAAGAGAGATAGCAATCGGACCAGTGGCTGTAGTATCTCTTCTTATAT 600
Query 620 CTTCAATGTTGCAGAAACTCATCGATCCAGAAACAGATCCCTTGGGATACAAGAAACTGG 679
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCTCAATGTTGCAGAAACTCATCGATCCAGAAACAGATCCCTTGGGATACAAGAAACTGG 660
Query 680 TCCTAACCACAACCTTCTTCGCCGGGATCTTCCAAGCTTCTTTCGGTTTATTCAGGTTAG 739
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 661 TCCTAACCACAACCTTTTTCGCCGGGATCTTCCAAGCTTCTTTCGGGTTATTCAGATTAG 720
Query 740 GGTTTCTGGTGGATTTTCTGTCGCACGCAGCCATAGTTGGGTTCATGGGTGGTGCAGCCA 799
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 721 GGTTTCTGGTGGATTTTCTGTCGCACGCAGCCATAGTAGGGTTCATGGGTGGTGCAGCCA 780
Query 800 TTGTAATTGGACTCCAACAGCTTAAAGGTTTGCTTGGTATCACTAACTTCACCACCAACA 859
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 TTGTAATTGGACTCCAACAGCTCAAAGGTTTGCTTGGTATCACTAACTTCACCACCAACA 840
Query 860 CTGACATTGTCTCTGTTCTTCGAGCTGTCTGGAGATCTTGTCAACAACAATGGAGCCCTC 919
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 841 CTGACATTGTCTCTGTTCTTCGAGCTGTCTGGCGATCTTGTCAACAACAATGGAGCCCCC 900
Query 920 ACACTTTCATCCTCGGATGTTCTTTCCTCAGTTTTATCCTTATTACTCGCTTCATCGGGA 979
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 901 ACACTTTCATCCTCGGATGTTCCTTCCTCAGTTTTATCCTTATCACTCGCTTCATCGGGA 960
Query 980 AGAAGTATAAGAAGCTGTTTTGGCTACCGGCAATAGCTCCGTTGATCGCCGTGGTAGTGT 1039
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGAAGTACAAGAAGCTGTTTTGGCTACCGGCAATAGCTCCGTTGATCGCCGTGGTAGTGT 1020
Query 1040 CAACACTAATGGTGTTTCTGACTAAAGCCGACGAGCATGGTGTGAAGACAGTGAGGCACA 1099
|||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 1021 CAACGCTAATGGTGTTTCTGACTAAAGCCGACGAGCATGGCGTGAAAACAGTGAAGCACA 1080
Query 1100 TCAAAGGAGGTCTTAATCCAATGTCCATTCAGGATCTCGACTTTAATACTCCTCATCTCG 1159
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1081 TCAAAGGAGGTCTAAATCCAATCTCCATTCACGATCTCGACTTTAATACTCCTCATCTCG 1140
Query 1160 GACAAATCGCTAAAATCGGATTAATCATTGCCATTGTTGCTCTAACCGAGGCGATTGCGG 1219
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1141 GACAAATCGCTAAAATCGGATTAATCATTGCCACTGTTGCTTTAACCGAGGCGATTGCGG 1200
Query 1220 TGGGGAGGTCGTTCGCCGGAATAAAAGGGTACAGACTCGATGGAAACAAAGAAATGGTGG 1279
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1201 TGGGGAGGTCGTTCGCCGGAATTAAAGGGTACAGACTCGATGGAAACAAAGAAATGGTGG 1260
Query 1280 CCATTGGATTTATGAATGTTCTCGGTTCCTTCACATCTTGTTACGCTGCTACTGGTTCAT 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CCATTGGATTTATGAATGTTCTCGGTTCCTTCACATCTTGTTACGCTGCTACTGGTTCAT 1320
Query 1340 TCTCTCGGACGGCCGTGAATTTTGCGGCAGGATGTGAGACAGCAATGTCCAACATTGTTA 1399
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1321 TCTCTCGGACCGCCGTGAACTTTGCGGCTGGATGTGAGACAGCAATGTCCAACATTGTTA 1380
Query 1400 TGGCGGTTACGGTGTTTGTAGCACTCGAGTGTCTAACGAGGCTTCTCTACTATACTCCAA 1459
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1381 TGGCGGTTACGGTGTTTGTAGCACTCGAGTGTCTAACGAGGCTTCTTTACTATACTCCAA 1440
Query 1460 TCGCCATCCTCGCTTCAATAATTCTCTCAGCACTTCCGGGACTAATCAACATTAACGAGG 1519
||||||| || |||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1441 TCGCCATTCTTGCTTCAATTATTCTCTCAGCACTTCCGGGACTTATCAACATTAATGAGG 1500
Query 1520 CTATTCACATTTGGAAAGTCGATAAATTCGATTTTCTTGCTCTCATTGGAGCTTTCTTTG 1579
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1501 CTATTCACATTTGGAAAGTCGATAAATTCGATTTTCTGGCTCTCGTTGGAGCTTTCTTTG 1560
Query 1580 GTGTTTTGTTCGCTTCCGTTGAGATCGGACTTCTTGTCGCGGTGGTTATTTCGTTTGCCA 1639
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GTGTTTTATTCGCTTCTGTTGAGATCGGACTTCTTGTCGCGGTGGTTATTTCGTTTGCCA 1620
Query 1640 AGATCATACTCATATCAATTCGTCCAGGGATAGAAACGCTTGGAAGAATGCCCGGGACCG 1699
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1621 AGATCATACTCATATCAATTCGTCCAGGGATAGAAACGCTCGGAAGAATGCCCGGGACCG 1680
Query 1700 ATACTTTTACAGATACTAATCAATATCCTATGACGGTTAAGACTCCCGGAGTGTTGATTT 1759
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1681 ATACTTTTGCAGATACTAATCAATATCCTATGACGGTTAAGACTCCCGGAGTGTTAATTT 1740
Query 1760 TTCGTGTCAAGTCTGCATTGTTGTGCTTTGCCAATGCCAGTTCAATTGAGGAAAGGATTA 1819
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1741 TTCGTGTCAAGTCTGCATTGTTGTGCTTTGCTAATGCCAGTTCAATCGAGGAAAGGATTA 1800
Query 1820 TGGGATGGGTCGATGAGGAAGAAGAAGAAGAAAACACAAAGAGCAATGCCAAGAGAAAGA 1879
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 1801 TGGGATGGGTCGATGAGGAGGAAGAAGAAGAAAACACAAAGAGCAATGGGAAGAGAAAAA 1860
Query 1880 TCCTCTTTGTAGTCCTTGATATGTCAAGTTTGATCAACGTCGATACATCGGGGATTACTG 1939
||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct 1861 TCCTCTTTGTAATCCTTGATATGTCAAATTTAATAAACGTCGATACATCGGGGATTACTG 1920
Query 1940 CTTTGCTGGAACTGCA-TAACAAATTAATCAAAACTGGTGTTGAGCTAGTGATCGTTAAC 1998
||||| |||| || || |||||| | ||| |||||||||||||||||||||||||||||
Sbjct 1921 CTTTGGTGGAGCT-CAATAACAAGCTGATCCAAACTGGTGTTGAGCTAGTGATCGTTAAC 1979
Query 1999 CCGAAATGGCAAGTAATCCACAAGCTGAATCAAGCAAAGTTCGTC-GACAGAATCGGTGG 2057
||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 1980 CCGAAATGGCAAGTAATCCACAAGCTGAATCAAGCAAAGTTTGTCAG-CAGAATCGGTGG 2038
Query 2058 CAAAGTTTACTTGACGATCGGCGAAGCTCTTGATGCTTGCTTTGGATTAAAAGTTTAAGA 2117
||| ||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 2039 CAAGGTTTATTTGACAATCGGGGAAGCTCTCGATGCTTGCTTTGGATTAAAAGTTTAAGA 2098
Query 2118 AACAGTTTTCAAA 2130
|||| ||||||||
Sbjct 2099 AACAATTTTCAAA 2111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91073775795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5