BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10190.1
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940489 jgi|Araly1|940489|scaffold_601033.1 2320 0.0
> Ahg940489 jgi|Araly1|940489|scaffold_601033.1
Length=1510
Score = 2320 bits (1256), Expect = 0.0
Identities = 1426/1509 (94%), Gaps = 7/1509 (0%)
Strand=Plus/Plus
Query 56 CGCCGCGGTGAGAAGCGATGAAGTCGGAGACTTTAACATTAGTTCTGGTGTATCTCGCCG 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 CGCCGCGGTGAGAAGCGATGAAGTCGGAGACTTTAACATTAGTTCTGGTGTATCTCGCCG 63
Query 116 GAATCATGGAGAGAGCCGATGAGTCTCTGCTTCCAGGAGTTTACAAAGAAGTTGGAGATG 175
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 64 GAATCATGGAGAGAGCCGACGAGTCTCTGCTTCCAGGAGTTTACAAAGAAGTAGGAGATG 123
Query 176 CTCTACACGTGGATCCCACAGCTCTTGGAACAT-TAACTCTGTTCCGCTCTATTGTTCAG 234
||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 124 CTCTACACGTGGATCCCACAGCTCTTGGAAC-TCTAACTCTGTTCCGGTCTATTGTTCAG 182
Query 235 TCTTCTTGTTACCCTTTAGCCGCTTACTTGTCTTCTAGACATAACCGAGCTCACGTCATC 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TCTTCTTGTTACCCTTTAGCCGCTTACTTGTCTTCTAGACATAACCGAGCTCACGTCATC 242
Query 295 GCTCTCGGTGCTTTCCTCTGGGCCACTGCCACTTTCCTCGTCGCCGTCTCCACTACTTTC 354
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 243 GCTCTCGGTGCTTTCCTCTGGGCTACCGCCACTTTTCTCGTCGCCGTCTCCACTACTTTC 302
Query 355 TTCCAGGTGGCAGTATCAAGAGGCTTGAACGGGATAGGGCTAGCCATTGTGACACCCGCG 414
||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 303 TTCCAGGTGGCAGTATCGAGAGGGTTGAACGGGATAGGGCTCGCCATCGTGACACCCGCG 362
Query 415 ATTCAGTCCCTAGTCGCTGACTCAACTGATGACTATAACCGTGGGATGGCATTTGGGTGG 474
|||||||| || |||||||||||||| || ||| |||||||||| ||||||||||| |||
Sbjct 363 ATTCAGTCACTGGTCGCTGACTCAACCGAAGACAATAACCGTGGCATGGCATTTGGATGG 422
Query 475 TTAGGATTCACATCAAACATTGGTTCCATACTTGGCTATGTATGTTCCATCCTCTTTGCC 534
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 423 TTAGGATTCACATCAAACATTGGTTCCATACTTGGCTATGTCTTTTCCATCCTCTTTGCC 482
Query 535 TCAAAATCTTTCAATGGTGTCGCTGGATGGAGAATCGCTTTCCTTTTGGTAGCAGTCGTT 594
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 483 TCCAAATCTTTCAATGGTGTCGCTGGATGGAGAATCGCTTTCCTTTTGGTAGCATTCGTT 542
Query 595 AGCGTGATAGTAGGCATTTTGGTCCGTCTCTTCGCAACAGATCCTCACTACAGCGACAGA 654
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 543 AGCGTGATAGTAGGCATTTTGGTCCGCCTCTTCGCAACAGATCCTCACTACAGCGACAGA 602
Query 655 AAGATCACAAAACATGTCAAAGACAAACCTTTCTGGTCAGACATAAGAGATCTATTGAAA 714
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 603 AAAATCACTAAACATGTCAAAGACAAACCTTTCTGGTCAGACATAAGAGATCTATTGCAG 662
Query 715 GAAGCTAAGATGGTGATAAAGATTCCGTCTTTCCAAATCTTTGTCGCTCAGGGAGTTTCG 774
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GAAGCAAAGATGGTGATAAAGATTCCGTCTTTCCAAATCTTTGTCGCTCAGGGAGTTTCT 722
Query 775 GGTTCTTTCCCTTGGTCAGCTTTGGCTTTTGCACCATTGTGGCTAGAACTCATTGGTTTC 834
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 723 GGTTCCTTCCCCTGGTCAGCTTTCGCTTTTGCACCATTGTGGCTAGAACTCATTGGTTTC 782
Query 835 TCCCACAAAACAACCGCGGTTCTCGTGACTCTTTTCACCATTTCTTGCTCTCTTGGAGGT 894
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 783 TCCCACAAAACAACTGCGGTTCTCGTAACTCTTTTCACCATTTCGTGCTCTCTTGGAGGT 842
Query 895 TTGTTTGGAGGATACATGGGAGATACTCTCGCCAAGAAGTTCCCAAATGGCGGTAGGATT 954
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 843 TTATTTGGAGGATACATGGGAGATACTCTCGCCAAGAAGTTCCCAAATGCCGGTAGGATA 902
Query 955 TTCCTCTCTCAGGTAAGCTCTGGCTCGGCAATTCCTTTAGCTGCGATTTTGCTTATCGGA 1014
||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 903 ATCCTCTCTCAGATAAGCTCTGCCTCAGCAATTCCTTTAGCTGCGATTTTGCTTATCGGA 962
Query 1015 TTACCTGATGATCCCTCCACGGCCTTTAGCCACGGTCTGGTTCTTGTCATCATGGGATTA 1074
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 963 TTACCTGATGATCCCTCCACTGCCTTTAGCCACGGTCTGGTTCTTGTCATCATGGGATTG 1022
Query 1075 TGCATCTCATGGAACGGTGCAGCTACAAACGGTCCAATATTTGCAGAGATAGTTCCTGAG 1134
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1023 TGCATCTCATGGAACGGTCCAGCTACAAACGGTCCAATATTTGCAGAGATTGTTCCTGAG 1082
Query 1135 AGAGCACGAACGAGCATCTACGCGTTAGACAGATCATTCGAGTCGAT-TCTAGCTTCTTT 1193
||||| || || ||||||||||| |||||||||||||||||||| || | |||| |||||
Sbjct 1083 AGAGCGCGGACCAGCATCTACGCATTAGACAGATCATTCGAGTCAATAT-TAGCATCTTT 1141
Query 1194 TGCTCCTCCTATAGTAGGGATGCTTGCTCAGAACATCTATGGATATAAACCAATCCCGGA 1253
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |
Sbjct 1142 TGCTCCTCCTATAGTAGGGATGCTTGCTCAGAACATCTATGGCTTTAAACCGATCCCCAA 1201
Query 1254 AGGATCCACAAGCTCGGTCAAGATTGATACAGATAGAGCGAACGCAGCATCGCTCGCTAA 1313
|||||| |||||| | |||||||||| ||||| |||| ||||||||||||||| |||||
Sbjct 1202 AGGATCTTCAAGCTTGATCAAGATTGAAACAGACAGAGAGAACGCAGCATCGCTTGCTAA 1261
Query 1314 AGCATTATACACATCGATTGGGATCCCGATGGTGATCTGTTGCACAATCTACTCGTTCCT 1373
|||| | |||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1262 AGCACTCTACACAGCGATCGGGATTCCGATGGTGATCTGTTGCACAATCTACTCGTTCCT 1321
Query 1374 ATATTGCACATACCCGAGGGACCGAGACAGAGCAAAAATGCAAGCCTTGATCGAGTCAGA 1433
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1322 ATATTGCACGTACCCGAGGGACCGAGACAGAGCGAAAATGCAAGCCTTGATCGAGTCAGA 1381
Query 1434 GATGCAACAACTCAATGAAGA-G--GAAGATGAGATCGAAGTGAAGTGTTTTGGAGCTGA 1490
||||||||||||||||||||| | ||||| ||||| || ||||||||||| ||||||||
Sbjct 1382 GATGCAACAACTCAATGAAGAAGAAGAAGAAGAGATTGAGGTGAAGTGTTTAGGAGCTGA 1441
Query 1491 AGAACACGATGAGGCTTATTTGCTTAAGCAGCATCAGAATGAGAGTTAAGAACAGAGTCA 1550
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 AGAACACGATGAGACTTATTTGCTTAAGCAGCATCAGAATGAGAGTTAAGAACAGAGTCA 1501
Query 1551 AATGATGAT 1559
|||||||||
Sbjct 1502 AATGATGAT 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66124665320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5