BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10210.1
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940491 jgi|Araly1|940491|scaffold_601035.1 854 0.0
Ahg350231 jgi|Araly1|350231|fgenesh1_pg.C_scaffold_6000824 235 4e-61
Ahg940493 jgi|Araly1|940493|scaffold_601037.1 209 3e-53
> Ahg940491 jgi|Araly1|940491|scaffold_601035.1
Length=632
Score = 854 bits (462), Expect = 0.0
Identities = 583/639 (91%), Gaps = 18/639 (3%)
Strand=Plus/Plus
Query 78 ATTCGAAATTTTCAAGCAAATGGGTATCGTTGAAAACATTCGTTCCCTTAAATTTGAAGT 137
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct 6 ATTCGAAATTTTCAAGCAAATGGGTATCGTTGAAAACATACGTTCTCTTAAACTTGAAGT 65
Query 138 GAAAATCGTGGAAGCTAGAAACGTAGAGCTCAAGTCATCGCCAACCACTCTCTTCGTTAG 197
|||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct 66 GAAAATCGTGGAAGCTAGAAACGTAGAGGTCAAGTCATCACTAACCACTCTCTTCGTTAG 125
Query 198 GTTCTATCTCCATGCAGGGAATAACAGTAAGATTGAACTAAACACT-CCAGAGATCCGTT 256
|||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||
Sbjct 126 GTTCTATCTCCATGCAGGAAATAACAGTAAGATCGAACTAAACACTGCC-GAGATCCGTT 184
Query 257 CGAGATCAGACTGTGAGGTCAT-TTCCTGGAACCAATCATTCGGTCTGGAGTGCCAAGGG 315
||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 185 CGAGATCAGACAAAGAGGTCGTGAT-CTGGAACCAATCATTCGGTCTGGAGTGCCAAGGG 243
Query 316 AACGAAACCGCGGTCGAGGAATTGAAGCAACAAAGTGTTGTTTTCGAACTACGGAGAAGG 375
|||||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 244 AACGAAACGGTGGTCGAGGAATTGAAGCAACAAAGCGTTGTTTTCGAACTACGGAGAA-G 302
Query 376 AAA-ACGACGCCGTTTTTGAAGAAGTGGTCGAAATCAGAGTTGGTGGGTAGAGGAAAGAT 434
||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 303 AAACACGACGTCGTTTTTGAAGAAGTGGTCGAGATCAGAGTTGGTGGGTAGAGGAAATAT 362
Query 435 TTTTTGGAAATCGGTTATAGAGACTGATGGGATGGAAATAGAGAGATTTGTAGTGATGGA 494
|| ||||||||| | |||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 363 TTCTTGGAAATCTATGATAGAGTCTGATGGAATGGAAATAGAGAGATTCGTAGTGATGGA 422
Query 495 TGAGACAAAAGATCACGTTCTGGAAGATTGTGATAAGCATAAACCTCTTTTGTTGAAGAT 554
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct 423 TGAGACAAAAGATCGGGTTTTGGAAGATTGTGATAAG------CCTCTTTTGTTGAAGAT 476
Query 555 AGCTTTAAAAGTGCAAGCTTCAAAAATC-GTGAACA-CTAAGAGAGTGGAAGATCTTTGT 612
||||||||||||||||||||| |||| | ||||| | ||||||| |||||||||||||||
Sbjct 477 AGCTTTAAAAGTGCAAGCTTC-AAAACCGGTGAA-ATCTAAGAGTGTGGAAGATCTTTGT 534
Query 613 GAGTGTAAAGATTGT-AGAACATGTAACTGCGTAGATTATGAAGCTTTTGTTGTAGCTTG 671
||||||| ||||||| || | |||||| ||| ||||||||||||||||||||||||||||
Sbjct 535 GAGTGTAGAGATTGTAAG-AGATGTAATTGCTTAGATTATGAAGCTTTTGTTGTAGCTTG 593
Query 672 TGCGTTAGCTGGGATTTAGTTTGTAAGAATAAAATTTAA 710
|||||||||||| ||||||||||||||| |||||||||
Sbjct 594 TGCGTTAGCTGGAATTTAGTTTGTAAGAGGAAAATTTAA 632
> Ahg350231 jgi|Araly1|350231|fgenesh1_pg.C_scaffold_6000824
Length=957
Score = 235 bits (127), Expect = 4e-61
Identities = 148/158 (94%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 841 TCAAGCATGGTCATGTCCAAGAAGGGCGAGAAGCATATCCTTGTAGTCACCAGAAGTGTC 900
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 957 TCAAGCATGGTCATGTCCAAGAAGGGCGAGAAGCATATTCTTGTAGTCACCAGAAGTGTC 898
Query 901 ATT-AGCAATGGCTCGATCAAGAGGAACACTGTTCCTGCGTAAGTATTCTTCTTTGATCC 959
|| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 897 -TTGAGCAATGGCTCGATCAAGAGGAACGCTGTTCCTGCGTAAGTATTCCTCTTTGATTC 839
Query 960 GCTCCAGGTCGACCTCTGCTCTTGTAGTGACCACTCTA 997
|||||| |||||||||||||| |||||||| ||||||
Sbjct 838 GCTCCATGTCGACCTCTGCTCGCGTAGTGACTACTCTA 801
> Ahg940493 jgi|Araly1|940493|scaffold_601037.1
Length=986
Score = 209 bits (113), Expect = 3e-53
Identities = 148/165 (90%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 833 ATGTTGTTTCAAGCATGGTCATGTCCAAGAAGGGCGAGAAGCATATCCTTGTAGTCACCA 892
|||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||||
Sbjct 974 ATGTTGTTTCAAGCATGGTCATGTCCGAGAAGAGCGAGAAGTATATCCTCATAGTCACCA 915
Query 893 -GAAGTGTCATTAGCAATGGCTCGATCAAGAGGAACACTGTTCCTGCGTAAGTATTCTTC 951
|| ||||| |||||||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 914 TGA-GTGTCTTTAGCAATGGCTCGATCAAGAGGAACACTGTTTCTACGTAAATATTCCTC 856
Query 952 TTTGATCCGCTCCAGGTCGACCTCTGCTCTTGTAGTGACCACTCT 996
||||||||| |||| ||| | |||||||| |||||||||||||||
Sbjct 855 TTTGATCCGTTCCATGTCAAACTCTGCTCGTGTAGTGACCACTCT 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37055475324
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5