BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10220.1
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350231 jgi|Araly1|350231|fgenesh1_pg.C_scaffold_6000824 1474 0.0
Ahg940493 jgi|Araly1|940493|scaffold_601037.1 1018 0.0
> Ahg350231 jgi|Araly1|350231|fgenesh1_pg.C_scaffold_6000824
Length=957
Score = 1474 bits (798), Expect = 0.0
Identities = 905/958 (94%), Gaps = 2/958 (0%)
Strand=Plus/Plus
Query 42 ATGGCGTCTCTCAAAATTCCAGCAAATATTCCTCTTCCCGAAGAAGACTCCGAGCAGCTC 101
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCTCTCAAAATTCCTGCAACTATTCCTCTTCCCGAAGAAGACTCCGAGCAGCTC 60
Query 102 CACAAGGCATTCAAAGGATGGGGAACTAATGAAGGGATGATCATATCAATTTTGGCTCAT 161
||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TACAAGGCCTTTAAAGGATGGGGAACTAATGAAGGGATGATCATATCAATCTTGGCTCAC 120
Query 162 AGAAACGCAACGCAACGCAGTTTCATTCGTGCCGTTTATGCTGCTAACTACAATAAGGAT 221
||||||||| |||| ||||| ||||| || || |||||||||||||||||||||||||||
Sbjct 121 AGAAACGCAGCGCAGCGCAGCTTCATCCGCGCTGTTTATGCTGCTAACTACAATAAGGAT 180
Query 222 CTTCTCAAGGAATTAGACGGAGAGCTTTCTGGTGACTTTGAGAGAGTTGTGATGTTGTGG 281
|||||||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||
Sbjct 181 CTTCTCAAGGAATTAGACAGAGAGTTTTCCGGTGACTTTGAGAGAGCTGTGATGTTGTGG 240
Query 282 ACTCTTGATCCAACGGAGAGAGATGCGTATTTGGCCAATGAATCTACCAAATTGTTCACC 341
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 241 ACTCTTGATCCAACGGAGAGGGATGCGTATTTGGCCAATGAATCTACCAAAATGTTCACC 300
Query 342 AAAAACATTTGGGTCCTAGTTGAAATCGCTTGTACTAGACCTTCTCTTGAGTTTTTCAAG 401
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAAACATTTGGGTTCTAGTTGAAATCGCTTGTACTAGACCTTCTCTTGAGTTTTTCAAG 360
Query 402 ACCAAGCAAGCATACCATGTTCGCTACAAGACCTCTCTCGAGGAAGATGTTGCATACCAT 461
|||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||
Sbjct 361 GCCAAGCAAGCATACCATGCTCGCTACAAGACCTCTCTCGAGGAGGATGTCGCATACCAC 420
Query 462 ACATCTGGAAATATCCGAAAGCTATTGGTTCCTCTTGTGAGCACCTTCAGGTACGATGGA 521
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACATCTGGAGATGTTCGAAAGCTATTGGTTCCTCTTGTGAGCACCTTCAGGTACGATGGA 480
Query 522 AATGCTGATGAGGTCAACGTGAAGCTGGCTAGATCCGAAGCTAAGACACTTCACAAGAAG 581
|| ||||||||||||||| ||| ||| || ||||| ||||||||||||||||||||||||
Sbjct 481 AACGCTGATGAGGTCAACATGATGCTTGCAAGATCTGAAGCTAAGACACTTCACAAGAAG 540
Query 582 ATCACTGAGAAGGCTTACACTGATGAAGATCTCATCAGAATCTTGACAACAAGGAGCAAA 641
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATAACTGAGAAGGCTTACACTGATGAAGATCTCATCAGAATCTTGACAACAAGGAGCAAA 600
Query 642 GCACAGATCAATGCAACACTCAATCACTTCAAGGACAAGTTTGGAAGTTCCATTAACAAG 701
|| ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 GCTCAGATCAGTGCAACGCTCAATCACTTCAAGGATAAGTTTGGAAGTTCCATTAACAAG 660
Query 702 TTTCTCAAAGAAGATTCGAACGATGATTATGTTCAATTACTCAAAACCGCGATCAAATGC 761
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTCTGAAGGAAGATTCCAACGATGATTATGTTCAATTACTCAAAACCGCGATCAAATGC 720
Query 762 TTGACATATCCAGAGAAGTACTTTGAGAAGGTTCTACGTCGAGCCATCAACAGGATGGGA 821
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 TTGACATATCCAGAGAAGTACTTTGAGAAGGTTCTACGTCGAGCCATCAACAAGATGGGA 780
Query 822 ACAGACGAGTGGGCACTTACTAGAGTGGTCACTACAAGAGCAGAGGTCGACCTGGAGCGG 881
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 781 ACAGACGAGTGGGCACTTACTAGAGTAGTCACTACGCGAGCAGAGGTCGACATGGAGCGA 840
Query 882 ATCAAAGAAGAATACTTACGCAGGAACAGTGTTCCTCTTGATCGAGCCATTGCT-AATGA 940
|||||||| |||||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 841 ATCAAAGAGGAATACTTACGCAGGAACAGCGTTCCTCTTGATCGAGCCATTGCTCAA-GA 899
Query 941 CACTTCTGGTGACTACAAGGATATGCTTCTCGCCCTTCTTGGACATGACCATGCTTGA 998
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 CACTTCTGGTGACTACAAGAATATGCTTCTCGCCCTTCTTGGACATGACCATGCTTGA 957
> Ahg940493 jgi|Araly1|940493|scaffold_601037.1
Length=986
Score = 1018 bits (551), Expect = 0.0
Identities = 852/995 (86%), Gaps = 30/995 (3%)
Strand=Plus/Plus
Query 21 GAAATATTCA-GTGGTCGGAGAATGGCGTCTCTCAAAATTCCAGCAAATATTCCTCTTCC 79
||||| |||| || ||| | ||||||||||||||| |||| || ||| ||||||||||
Sbjct 1 GAAAT-TTCACTTGTTCGAAAAATGGCGTCTCTCAAGGTTCCCGCCAATGTTCCTCTTCC 59
Query 80 CGAAGAAGACTCCGAGCAGCTCCACAAGGCATTCAAAGGATGGGGAACTAATGAAGGGAT 139
||||||||| | ||||| |||||||| || || |||||||||||||| ||||| |||||
Sbjct 60 AGAAGAAGACGCTGAGCAACTCCACAAAGCCTTTAAAGGATGGGGAACCAATGAGGGGAT 119
Query 140 GATCATATCAATTTTGGCTCATAGAAACGCAACGCAACGCAGTTTCATTCGTGCCGTTTA 199
|||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 120 GATCATATCAATCTTGGCTCACAGAAATGCAACGCAACGCAGTTTCATTCGTGCTGTTTA 179
Query 200 TGCTGCTAACTACAATAAGGATCTTCTCAAGGAATTAGACGGAGAGCTTTCTGGTGACTT 259
|||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct 180 TGCTGCTAACTACAATAAGGATCTTCTCAATGAATTAGACAGAGAGCTTTCCGGTGACTT 239
Query 260 TGAGAGAGTTGTGATGTTGTGGACTCTTGATCCAACGGAGAGAGATGCGTATTTGGCCAA 319
|||| ||| |||||||||||||||| |||| ||| ||||||||||||| |||||||| ||
Sbjct 240 TGAGCGAGCTGTGATGTTGTGGACTTTTGAACCAGCGGAGAGAGATGCTTATTTGGCAAA 299
Query 320 TGAATCTACCAAATTGTTCACCAAAAACATTTGGGTCCTAGTTGAAATCGCTTGTACTAG 379
|||||||||||| ||||||||||||||| |||||| || || ||| |||||||||||||
Sbjct 300 AGAATCTACCAAAATGTTCACCAAAAACAATTGGGTTCTTGTCGAAGTCGCTTGTACTAG 359
Query 380 ACCTTCTCTTGAGTTTTTCAA-GACCAAGCAAGCATACCATGTTCGCTACAAGACCTCTC 438
| || |||||||||| |||| | |||||||||||||||| | || ||||| |||||||
Sbjct 360 ATCTGCTCTTGAGTTCTTCAGTG-CCAAGCAAGCATACCAAGCCCGTTACAAAACCTCTC 418
Query 439 TCGAGGAAGATGTTGCATACCATACATCTGGAAATATCCGAAAGCTATTGGTTCCTCTTG 498
|||||||||| || |||||||| ||||||||| | || |||||||| |||||||||||||
Sbjct 419 TCGAGGAAGACGTCGCATACCACACATCTGGAGACATTCGAAAGCTCTTGGTTCCTCTTG 478
Query 499 TGAGCACCTTCAGGTACGATGGAAATGCTGATGAGGTCAACGTGAAGCTGGCTAGATCCG 558
||||||| || |||||||||||| ||| | || | ||| || ||| ||||| || |
Sbjct 479 TGAGCACTTTTAGGTACGATGGAGATG---A--AG-TGAACATGGTGCTAGCTAGGTCAG 532
Query 559 AAGCTAAGACACTTCA-CAAGAAGATC-ACTGAGAAGGCTTACACTGATGAAGATCTCAT 616
| ||||||| |||||| || ||||||| | ||||||||||| |||||| ||||||||
Sbjct 533 AGGCTAAGATACTTCATCA-GAAGATCGAG-GAGAAGGCTTATGTTGATGACGATCTCAT 590
Query 617 CAGAATCTTGACAACAAGGAGCAAAGCACAGATCAATGCAACACTCAATCACTTCAAGGA 676
|||||||||||||||||| |||||||| || |||| ||||| |||||||||| ||| |
Sbjct 591 CAGAATCTTGACAACAAGAAGCAAAGCTCAAATCAGCGCAACTCTCAATCACTACAAAAA 650
Query 677 CAAGTTT-GGAAGTTCCATTAACAAGTTTCTCAAAGAAG-ATTCGAACGATGATTATGTT 734
||| ||| |||| |||||| ||| | || |||| || ||||| | || | || |
Sbjct 651 CAA-TTTCGGAACTTCCATGGCCAAATACCT-AAAGGAGGATTCGGA--AT-AC-AT-T- 702
Query 735 CAATTACTCAAAACCGCGATCAAATGCTTGACATATCCAGAGAAGTACTTT-GAGAAGGT 793
|||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 703 CAATTACTCAAAGCCGTGATCAAATGCTTGACATATCCAGAGAAGTA-TTTCGAGAAAGT 761
Query 794 TCTACGTCGAGCCATCAACAGGA-TGGGAACAGACGAGTGGGCACTTACTAGAGTGGTCA 852
|||||||| ||||||||||| | |||||||||||||||||| |||||| ||||||||||
Sbjct 762 TCTACGTCAAGCCATCAACAA-ACTGGGAACAGACGAGTGGGGACTTACGAGAGTGGTCA 820
Query 853 CTACAAGAGCAGAGGTCGACCTGGAGCGGATCAAAGAAGAATACTTACGCAGGAACAGTG 912
||||| |||||||| | ||| |||| ||||||||||| ||||| ||||| || |||||||
Sbjct 821 CTACACGAGCAGAGTTTGACATGGAACGGATCAAAGAGGAATATTTACGTAGAAACAGTG 880
Query 913 TTCCTCTTGATCGAGCCATTGCTAATGACACTTC-TGGTGACTACAAGGATATGCTTCTC 971
||||||||||||||||||||||||| |||||| | ||||||||| ||||||| ||||||
Sbjct 881 TTCCTCTTGATCGAGCCATTGCTAAAGACACT-CATGGTGACTATGAGGATATACTTCTC 939
Query 972 GCCCTTCTTGGACATGACCATGCTTGAAACAACAT 1006
|| ||||| ||||||||||||||||||||||||||
Sbjct 940 GCTCTTCTCGGACATGACCATGCTTGAAACAACAT 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41363364945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5