BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10230.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940493 jgi|Araly1|940493|scaffold_601037.1 1565 0.0
Ahg350231 jgi|Araly1|350231|fgenesh1_pg.C_scaffold_6000824 1020 0.0
> Ahg940493 jgi|Araly1|940493|scaffold_601037.1
Length=986
Score = 1565 bits (847), Expect = 0.0
Identities = 946/993 (95%), Gaps = 10/993 (1%)
Strand=Plus/Plus
Query 7 GAAATTTCACTTGTTCGAAAAATGGCTTCTCTCAAAGTTCCCGCCACTGTTCCTCTTCCC 66
|||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct 1 GAAATTTCACTTGTTCGAAAAATGGCGTCTCTCAAGGTTCCCGCCAATGTTCCTCTTCCA 60
Query 67 GAAGAAGACGCTGAGCAACTCTACAAAGCCTTTAAAGGATGGGGAACCAATGAGAGGATG 126
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 61 GAAGAAGACGCTGAGCAACTCCACAAAGCCTTTAAAGGATGGGGAACCAATGAGGGGATG 120
Query 127 ATCATATCAATCTTGGCTCACAGAAATGCAACGCAACGTAGTTTCATTCGTGCCGTTTAT 186
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 ATCATATCAATCTTGGCTCACAGAAATGCAACGCAACGCAGTTTCATTCGTGCTGTTTAT 180
Query 187 GCTGCTAACTACAATAAGGATCTTCTCAAGGAATTAGACAGAGAGCTTTCCGGTGACTTT 246
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GCTGCTAACTACAATAAGGATCTTCTCAATGAATTAGACAGAGAGCTTTCCGGTGACTTT 240
Query 247 GAGCGAGCTGTGATGTTGTGGACTTTTGAACCAGCGGAGAGAGATGCTTATTTGGCAAAA 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGCGAGCTGTGATGTTGTGGACTTTTGAACCAGCGGAGAGAGATGCTTATTTGGCAAAA 300
Query 307 GAATCTACCAAAATGTTCACCAAAAACAATTGGGTTCTTGTCGAAATCGCTTGTACTAGA 366
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GAATCTACCAAAATGTTCACCAAAAACAATTGGGTTCTTGTCGAAGTCGCTTGTACTAGA 360
Query 367 TCTGCTCTTGAACTCTTTAATGCCAAGCAAGCATACCAAGCCCGCTACAAGACCTCCCTC 426
||||||||||| |||| | |||||||||||||||||||||||| ||||| ||||| |||
Sbjct 361 TCTGCTCTTGAGTTCTTCAGTGCCAAGCAAGCATACCAAGCCCGTTACAAAACCTCTCTC 420
Query 427 GAGGAAGACGTCGCATACCACACATCTGGAGACATTCGAAAGCTCTTGGTACCTCTTGTG 486
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 GAGGAAGACGTCGCATACCACACATCTGGAGACATTCGAAAGCTCTTGGTTCCTCTTGTG 480
Query 487 AGCACTTTTAGGTACGATGGAGATGAAGTGAACATGACGTTAGCTAGGTCCGAGGCTAAG 546
|||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 481 AGCACTTTTAGGTACGATGGAGATGAAGTGAACATGGTGCTAGCTAGGTCAGAGGCTAAG 540
Query 547 ATACTTCA-CGAGAAGATCAAGGAAAAGGCTTATGCTGATGATGATCTCATAAGAATCTT 605
|||||||| | |||||||| |||| |||||||||| |||||| |||||||| ||||||||
Sbjct 541 ATACTTCATC-AGAAGATCGAGGAGAAGGCTTATGTTGATGACGATCTCATCAGAATCTT 599
Query 606 GACAACCAGGAGCAAAGCACAAATCAGCGCAACTCTCAATCACTACAAAAACAATTTCGG 665
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GACAACAAGAAGCAAAGCTCAAATCAGCGCAACTCTCAATCACTACAAAAACAATTTCGG 659
Query 666 AACTTCCATGAGC-AAATACCTAAAGGAGGATTCGGAAAACGAATACATTCAATTGCTCA 724
|||||||||| || |||||||||||||||||||||||| ||||||||||| ||||
Sbjct 660 AACTTCCATG-GCCAAATACCTAAAGGAGGATTCGGAA------TACATTCAATTACTCA 712
Query 725 AAGCCGTGATCAAATGCTTGACATATCCAGAGAAGTATTTTGAGAAAGTTCTACGTCAAG 784
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 713 AAGCCGTGATCAAATGCTTGACATATCCAGAGAAGTATTTCGAGAAAGTTCTACGTCAAG 772
Query 785 CCATCAACAAATTGGGAACAGATGAGTGGGGACTAACGAGAGTGGTCACTACACGAGCAG 844
||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 773 CCATCAACAAACTGGGAACAGACGAGTGGGGACTTACGAGAGTGGTCACTACACGAGCAG 832
Query 845 AGTTTGACATGGAACGGATCAAAGAGGAATATATACGTAGAAACAGTGTTCCTCTTGATC 904
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 833 AGTTTGACATGGAACGGATCAAAGAGGAATATTTACGTAGAAACAGTGTTCCTCTTGATC 892
Query 905 GAGCCATTGCTAAAGACACTCATGGTGACTATGAGGATATACTTCTCGCTCTTCTCGGAC 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GAGCCATTGCTAAAGACACTCATGGTGACTATGAGGATATACTTCTCGCTCTTCTCGGAC 952
Query 965 ATGACCATGCTTGAAATAACATTTGCAAGTTTT 997
|||||||||||||||| ||||||||||||||||
Sbjct 953 ATGACCATGCTTGAAACAACATTTGCAAGTTTT 985
> Ahg350231 jgi|Araly1|350231|fgenesh1_pg.C_scaffold_6000824
Length=957
Score = 1020 bits (552), Expect = 0.0
Identities = 832/966 (86%), Gaps = 24/966 (2%)
Strand=Plus/Plus
Query 28 ATGGCTTCTCTCAAAGTTCCCGCCACTGTTCCTCTTCCCGAAGAAGACGCTGAGCAACTC 87
||||| ||||||||| |||| || ||| |||||||||||||||||||| | ||||| |||
Sbjct 1 ATGGCGTCTCTCAAAATTCCTGCAACTATTCCTCTTCCCGAAGAAGACTCCGAGCAGCTC 60
Query 88 TACAAAGCCTTTAAAGGATGGGGAACCAATG-AGAGGATGATCATATCAATCTTGGCTCA 146
||||| |||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct 61 TACAAGGCCTTTAAAGGATGGGGAACTAATGAAG-GGATGATCATATCAATCTTGGCTCA 119
Query 147 CAGAAATGCAACGCAACGTAGTTTCATTCGTGCCGTTTATGCTGCTAACTACAATAAGGA 206
|||||| ||| |||| || || ||||| || || ||||||||||||||||||||||||||
Sbjct 120 CAGAAACGCAGCGCAGCGCAGCTTCATCCGCGCTGTTTATGCTGCTAACTACAATAAGGA 179
Query 207 TCTTCTCAAGGAATTAGACAGAGAGCTTTCCGGTGACTTTGAGCGAGCTGTGATGTTGTG 266
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 180 TCTTCTCAAGGAATTAGACAGAGAGTTTTCCGGTGACTTTGAGAGAGCTGTGATGTTGTG 239
Query 267 GACTTTTGAACCAGCGGAGAGAGATGCTTATTTGGCAAAAGAATCTACCAAAATGTTCAC 326
|||| |||| ||| ||||||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 240 GACTCTTGATCCAACGGAGAGGGATGCGTATTTGGCCAATGAATCTACCAAAATGTTCAC 299
Query 327 CAAAAACAATTGGGTTCTTGTCGAAATCGCTTGTACTAGATCTGCTCTTGAACTCTTT-A 385
|||||||| ||||||||| || |||||||||||||||||| || ||||||| | ||| |
Sbjct 300 CAAAAACATTTGGGTTCTAGTTGAAATCGCTTGTACTAGACCTTCTCTTGAGTT-TTTCA 358
Query 386 ATGCCAAGCAAGCATACCAAGCCCGCTACAAGACCTCCCTCGAGGAAGACGTCGCATACC 445
| ||||||||||||||||| || |||||||||||||| |||||||| || ||||||||||
Sbjct 359 AGGCCAAGCAAGCATACCATGCTCGCTACAAGACCTCTCTCGAGGAGGATGTCGCATACC 418
Query 446 ACACATCTGGAGACATTCGAAAGCTCTTGGTACCTCTTGTGAGCACTTTTAGGTACGATG 505
||||||||||||| |||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct 419 ACACATCTGGAGATGTTCGAAAGCTATTGGTTCCTCTTGTGAGCACCTTCAGGTACGATG 478
Query 506 GAGA---TGA--AG-TGAACATGACG-TTAGCTAGGTCCGAGGCTAAGATACTTCACGAG 558
|| | ||| || | ||||||| | || || || || || ||||||| ||||||| ||
Sbjct 479 GAAACGCTGATGAGGTCAACATGATGCTT-GCAAGATCTGAAGCTAAGACACTTCACAAG 537
Query 559 AAGATCAAG-GAAAAGGCTTATGCTGATGATGATCTCATAAGAATCTTGACAACCAGGAG 617
||||| || || |||||||| ||||||| |||||||| |||||||||||||| |||||
Sbjct 538 AAGAT-AACTGAGAAGGCTTACACTGATGAAGATCTCATCAGAATCTTGACAACAAGGAG 596
Query 618 CAAAGCACAAATCAGCGCAACTCTCAATCACTACAAAAACAA-TTTCGGAACTTCCATGA 676
|||||| || ||||| ||||| |||||||||| ||| | || ||| |||| |||||| |
Sbjct 597 CAAAGCTCAGATCAGTGCAACGCTCAATCACTTCAAGGATAAGTTT-GGAAGTTCCATTA 655
Query 677 GCAAATACCTAAAGGAGGATTCGGAAA-ACGAATACATTCAATTGCTCAAAGCCGTGATC 735
||| | || ||||| ||||| || | || || ||||||| |||||| ||| ||||
Sbjct 656 ACAAGTTTCTGAAGGAAGATTCC-AACGATGATTATGTTCAATTACTCAAAACCGCGATC 714
Query 736 AAATGCTTGACATATCCAGAGAAGTATTTTGAGAAAGTTCTACGTCAAGCCATCAACAA- 794
|||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct 715 AAATGCTTGACATATCCAGAGAAGTACTTTGAGAAGGTTCTACGTCGAGCCATCAACAAG 774
Query 795 ATTGGGAACAGATGAGTGGGGACTAACGAGAGTGGTCACTACACGAGCAGAGTTTGACAT 854
|| ||||||||| ||||||| ||| || ||||| |||||||| ||||||||| | |||||
Sbjct 775 AT-GGGAACAGACGAGTGGGCACTTACTAGAGTAGTCACTACGCGAGCAGAGGTCGACAT 833
Query 855 GGAACGGATCAAAGAGGAATA-TATACGTAGAAACAGTGTTCCTCTTGATCGAGCCATTG 913
||| || |||||||||||||| | |||| || ||||| ||||||||||||||||||||||
Sbjct 834 GGAGCGAATCAAAGAGGAATACT-TACGCAGGAACAGCGTTCCTCTTGATCGAGCCATTG 892
Query 914 CTAAAGACACT-CATGGTGACTATGAGGATATACTTCTCGCTCTTCTCGGACATGACCAT 972
|| |||||||| | ||||||||| || |||| |||||||| ||||| ||||||||||||
Sbjct 893 CTCAAGACACTTC-TGGTGACTACAAGAATATGCTTCTCGCCCTTCTTGGACATGACCAT 951
Query 973 GCTTGA 978
||||||
Sbjct 952 GCTTGA 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5