BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10260.1
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487852 jgi|Araly1|487852|fgenesh2_kg.6__986__AT5G10260.1 1328 0.0
Ahg496719 jgi|Araly1|496719|fgenesh2_kg.8__2535__AT5G64990.1 494 5e-139
> Ahg487852 jgi|Araly1|487852|fgenesh2_kg.6__986__AT5G10260.1
Length=842
Score = 1328 bits (719), Expect = 0.0
Identities = 803/843 (95%), Gaps = 7/843 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAGTGTGTCACCATTAGCAAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTT 60
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAGTGTGTCACCTTTAGCCAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTT 60
Query 61 GGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGGCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGGCA 120
Query 121 ACCATTGGAATTGATTTTTTGTCAAAAACAATGTACCTTGAGGATAGGACTGTTCGTCTC 180
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 ACAATTGGAATTGATTTTTTGTCAAAAACAATGTACCTTGAGGTTAGGACTGTTCGTCTG 180
Query 181 CAACTATGGGATACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCAGA 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 CAACTATGGGACACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCCGA 240
Query 241 GATTCTTCTGTTGCTGTAATTGTCTATGATGTTGCAAATAGGCAGTCATTCTTGAACACA 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATTCTTCTGTTGCTGTTATTGTCTATGATGTTGCAAATAGGCAGTCATTCTTGAACACC 300
Query 301 TCCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTT 360
Query 361 GGTAACAAAACAGATCTCGTCGACAAAAGGCAAGTGTCGATTGAGGAAGGTGATAACAAA 420
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 361 GGTAACAAAACAGATCTCGTTGACAAAAGGCAAGTGTCGATTGAGGAAGGGGATAACAAA 420
Query 421 GCTCGTGATTATGGAGTAATATTCATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAG 480
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 421 GCTCGTGATTATGGAGTCATATTCATAGAGACCAGTGCAAAAGCAGGATTCAACATCAAG 480
Query 481 CCACTTTTTCGCAAGATTGCAGCAGCGTTACCAGGAATGGAAACACTTTCTTCAACGAAA 540
||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 481 CCACTATTCCGCAAGATTGCAGCAGCATTACCAGGAATGGAAACACTGTCTTCAACGAAA 540
Query 541 CAAGAGGATATGGTTGATGTGAATCTAAAGACTTCGAGCAATTCGGCTCAAGGGGAGCAA 600
||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||
Sbjct 541 CAAGAGGATATGGTTGATGTGAACCTAAAGACTTCGACCAATTCGTCTCAAGGGGAGCAA 600
Query 601 CAACGAGGTGGTTGTGCTTGTTAATCAGTTTTAAATATATAC-----ACAGCAGCAGAAT 655
||||||||||||||| | ||||||||| |||||||||||||| |||||| ||||||
Sbjct 601 CAACGAGGTGGTTGTTCGTGTTAATCAATTTTAAATATATACGTTTGACAGCAACAGAAT 660
Query 656 AGGAAGATTTTTAAACGAAAGATTCATAATTTTATGGAACAAATAAATCCTGGTATGAGG 715
||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 AGGAAGATTTTAAAACAAAAGATTCATAATTTGATGGAACAAATAAATCCTGGTATGAGG 720
Query 716 AAAGGTGATTACACTTGGAGACTCTAGTTTTTCTTTGGAGAGGTTTTGTTTTCAATATAG 775
||||| |||||||||| ||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 721 AAAGGAGATTACACTTTGAGACTCTAATTTT-CTTTGGAGAGGTTTTGTTTTCAATATAG 779
Query 776 AGTTGTGTAATAAAGACGTCTGAAAGCTTATGAAGAAGAATGGC-ATGTTTTGCTCTGTT 834
||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 780 AGTTGTGTAATAATGACGTGTGAAAGCTTATGAAGAAGAATGGCGATGTTTTGCTCTGTT 839
Query 835 CTC 837
|||
Sbjct 840 CTC 842
> Ahg496719 jgi|Araly1|496719|fgenesh2_kg.8__2535__AT5G64990.1
Length=621
Score = 494 bits (267), Expect = 5e-139
Identities = 458/550 (83%), Gaps = 14/550 (3%)
Strand=Plus/Plus
Query 28 TACAAGCTCGTGTTCCTTGGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTTTC 87
|||||||| |||||||| || |||||| ||||||||| || |||||||||||| |||||
Sbjct 22 TACAAGCTAGTGTTCCTGGGCGATCAAGGCGTTGGCAAAACGAGCATCATCACTTGTTTC 81
Query 88 ATGTACGACAAATTCGATACCACTTATCAGGCAACCATTGGAATTGATTTTTTGTCAAAA 147
||||||| |||||||| |||| ||||||||| || |||||||| || |||||||| |||
Sbjct 82 ATGTACGGTAAATTCGACACCAGTTATCAGGCTACAATTGGAATAGACTTTTTGTCCAAA 141
Query 148 ACAATGTAC-CT-TGAGGATAGGACTGTTCGTCTCCAACTATGGGATACTGCAGGACAGG 205
|||||| | || ||| ||||||||| ||||||| ||| | |||||||| |||||||| |
Sbjct 142 ACAATG--CGCTATGAAGATAGGACTTTTCGTCTGCAATTGTGGGATACAGCAGGACAAG 199
Query 206 AGAGATTTCGAAGTCTAATACCAAGTTATATCAGAGATTCTTCTGTTGCTGTAATTGTCT 265
|||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 200 AGAGATTTAAAAGCCTAGTACCAAGTTATATCAGAGATTCTTCTGTTGCTGTTATTGTCT 259
Query 266 ATGATGTTGCAAATAGGCAGTCATTCTTGAACACATCCAAGTGGATTGAGGATGTTCGTA 325
|||||||||| | || ||| ||||| || ||||| ||||||||||| || || ||||||
Sbjct 260 ATGATGTTGCCAGTAAGCAATCATTTTTAAACACCTCCAAGTGGATCGAAGAAGTTCGTG 319
Query 326 CAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTTGGTAACAAAACAGATCTCGTCGACA 385
|||| ||||| ||| ||||||| |||||||| |||||||||||||| ||||| || | |
Sbjct 320 CAGAAAGAGGCAGCCATGTCATTATTGTTCTTGTTGGTAACAAAACCGATCTTGTTAATA 379
Query 386 AAAGGCAAGTGTCGATTGAGGAAGGTGATAACAAAGCTCGTGA-TTATGGAG-TAATATT 443
|| ||||||| || || |||||||| ||||| ||||||||||| || ||||| | | ||
Sbjct 380 AACGGCAAGTTTCAATAGAGGAAGGGGATAATAAAGCTCGTGAGTT-TGGAGCTT-TGTT 437
Query 444 CATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAGCCACTTT-TTC-GCAAGATTGCA 501
||| ||||| ||||||||||| ||||| ||||| ||||| ||| ||| | ||||| |
Sbjct 438 CATGGAGACTAGTGCAAAAGCTGGATTCAACATTAAGCC--TTTGTTCTGTAAGATCAC- 494
Query 502 G-CAGCGTTACCAGGAATGGAAACACTTTCTTCAACGAAACAAGAGGATATGGTTGATGT 560
| | ||||||| ||||| || || |||||| ||||||||||||||| | || |||||
Sbjct 495 GTCTGCGTTACAAGGAAACGAGGCAGTTTCTTGGACGAAACAAGAGGATTTAGTGGATGT 554
Query 561 GAATCTAAAG 570
||||||||||
Sbjct 555 GAATCTAAAG 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30993931521
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5