BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10270.1
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487853 jgi|Araly1|487853|fgenesh2_kg.6__987__AT5G10270.1 2700 0.0
Ahg951336 jgi|Araly1|951336|scaffold_803223.1 1611 0.0
> Ahg487853 jgi|Araly1|487853|fgenesh2_kg.6__987__AT5G10270.1
Length=1675
Score = 2700 bits (1462), Expect = 0.0
Identities = 1581/1638 (97%), Gaps = 10/1638 (1%)
Strand=Plus/Plus
Query 78 TCCCGGGAACGAAGATGGCGATGGCATCATTCGGGCAGCTAAATCTCGAGGAACCTCCTC 137
|||||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||||
Sbjct 47 TCCCGGGAACGAAGATGGCGTTGGCAGCTTTCGGGCAGCTAAACCTCGAGGAACCTCCTC 106
Query 138 CAATCTGGGGATCTCGCAGCGTTGATTGCTTTGAGAAGCTCGAACAAATTGGTGAAGGCA 197
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 107 CGATCTGGGGATCTCGCAGCGTTGATTGTTTTGAGAAGCTCGAACAAATCGGTGAAGGCA 166
Query 198 CTTACGGTCAAGTTTACATGGCTAAAGAAATCAAAACTGGTGAAATTGTGGCTCTCAAAA 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 CTTACGGTCAAGTTTACATGGCTAAAGAAATCAAAACTGGTGAAATTGTGGCTCTCAAAA 226
Query 258 AGATACGTATGGACAATGAAAGAGAAGGGTTTCCTATAACAGCTATTAGAGAGATAAAGA 317
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 227 AGATTCGTATGGACAATGAAAGAGAAGGGTTTCCTATAACAGCTATCAGGGAGATAAAGA 286
Query 318 TTCTGAAGAAGCTTCATCATGAAAATGTCATTCAGCTGAAAGAGATTGTGACTTCACCAG 377
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TCCTAAAGAAGCTTCATCATGAAAATGTCATTCAGCTGAAAGAGATTGTGACTTCACCAG 346
Query 378 GTCGGGACAGGGATGACCAAGGAAAGCCAGATAATAACAAATACAAGGGTGGCATCTACA 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 GTCGGGACAGGGATGACCAAGGAAAGCCAGATAATAACAAATACAAGGGTGGCATCTACA 406
Query 438 TGGTTTTTGAGTACATGGATCATGATTTGACTGGACTAGCAGATCGTCCTGGACTGAGAT 497
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 407 TGGTTTTTGAGTACATGGATCATGATTTGACTGGACTAGCTGATCGTCCTGGACTGAGAT 466
Query 498 TTACTGTTCCTCAAATTAAGTGTTACATGAAGCAATTGCTTACCGGGCTTCACTATTGTC 557
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 467 TTACTGTTCCTCAAATTAAGTGTTACATGAAGCAATTGCTCACCGGGCTTCACTATTGTC 526
Query 558 ATGTGAATCAAGTGCTTCACCGTGATATAAAAGGCTCAAATCTCCTTATCGACAATGAGG 617
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 527 ATGTGAATCAAGTTCTTCACCGTGATATAAAAGGCTCAAATCTCCTTATTGACAATGAGG 586
Query 618 GAAATTTAAAGCTGGCTGATTTTGGGCTTGCACGGTCGTATTCTCATGATCATACTGGAA 677
|||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| |
Sbjct 587 GAAATTTAAAGCTGGCTGATTTTGGGCTTGCACGATCGTTTTCTCATGATCATTCTGGGA 646
Query 678 ATCTTACAAATCGTGTCATCACATTGTGGTATAGGCCCCCTGAATTACTACTTGGGGCTA 737
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 647 ATCTTACAAATCGTGTCATCACATTGTGGTATAGGCCCCCTGAATTACTACTCGGGGCTA 706
Query 738 CAAAATATGGCCCAGCAATTGACATGTGGTCGGTTGGTTGCATATTTGCCGAACTTTTGC 797
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 707 CAAAATATGGCCCAGCAATTGACATGTGGTCAGTTGGTTGCATATTTGCCGAACTTTTAC 766
Query 798 ATGCAAAACCAATCTTACCTGGGAAAAATGAGCAAGAACAATTGAACAAGATATTTGAGC 857
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 ATGCAAAACCAATTTTGCCTGGGAAAAATGAGCAAGAACAATTGAACAAGATATTTGAGC 826
Query 858 TTTGTGGATCACCTGATGAAAA-ACTTTGGCCTGGGGTTTCCAAGATGCCTTGGTTCAAC 916
|||||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||
Sbjct 827 TTTGTGGATCACCTGATGAAAACA-TTTGGCCCGGGGTTTCCAAGATGCCTTGGTACAAC 885
Query 917 AATTTCAAGCCTGCACGGCCCTTGAAGAGGCGTGTAAGAGAGTTCTTCAGACACTTTGAT 976
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 886 AATTTCAAGCCTGCACGGCCCTTAAAGAGGCGTGTAAGAGAGTTCTTCAGACACTTTGAT 945
Query 977 CGGCATGCTCTTGAATTACTGGAGAAAATGTTGGTGCTTGATCCAGCACAGAGAATATCG 1036
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 946 CGGCATGCTCTTGAATTACTGGAGAAAATGTTGGTGCTTGATCCATCACAGAGAATATCG 1005
Query 1037 GCAAAGGATGCTCTTGATGCCGAGTACTTTTGGACTGATCCGTTGCCATGTGACCCAAAG 1096
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1006 GCAAAGGATGCTCTTGATGCCGAATACTTTTGGACTGATCCGCTGCCATGTGACCCAAAG 1065
Query 1097 AGTCTGCCCACATATGAATCATCACATGAGTTCCAGACAAAGAAAAAGCGGCAACAGCAG 1156
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 AGTCTGCCTACATATGAATCATCACATGAGTTCCAGACAAAGAAAAAGCGGCAACAGCAG 1125
Query 1157 CGCCAAAACGAGGAAGCAGCAAAAAGACAGAAACTGCAGCATCCACCGCTGCAGCACTCT 1216
|||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1126 CGCCAAAATGAGGAAGCAGCAAAAAGACAGAAAGTGCAGCATCCACCGCAGCAGCACTCT 1185
Query 1217 CGCTTACCCCCATTACAACATGGTGGACAGTCTCATGCTGCTCCACATTGGCCTGCAGGT 1276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1186 CGCTTACCCCCATTACAACATGGTGGACAGTCTCATGCTGCTCCACATTGGCCTGCTGGT 1245
Query 1277 CCAAACCATCCCACTAACAACGCACCACCACAAGTACCTGCTGGACCCAGCCACAACTTC 1336
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1246 CCAAACCATCCCACTAACAACGCACCACCACAAGTACCTGCTGGACCCAGCCACCACTTC 1305
Query 1337 TATGGGAAGCCGCGTGGTCCACCTGGTCCAAACCGCTACCCTCCTAGCGGAAACCAGAGC 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TATGGGAAGCCGCGTGGTCCACCTGGTCCAAACCGCTACCCTCCTAGCGGAAACCAGAGC 1365
Query 1397 GGGGGTTATAATCAAAGCCGAGGAGGTTACAGCAGTGGATCATATCCTCCACAAGGACGT 1456
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GGGGGTTATAATCAAAGTCGAGGAGGTTACAGCAGTGGATCATATCCTCCACAAGGACGG 1425
Query 1457 GGAGCTCCTTATGTGGCTGGTCCTAGAGGGCCTAGTGGTGGCCCGTACGGGGTTGGACCT 1516
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1426 GGAGCTCCTTATGTGGCTGGTCCTAGAGGGCCTAGTGGTGGCGCGTACGGGGTTGGACCA 1485
Query 1517 CCTAACTACACACAAGGTGGTCAGTATGGTGGCTCTGGTAGCTCGGGAAGAGGGCAGAAT 1576
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1486 CCTAACTACACACAAGGTGGCCAGTATGGTGGCTCTGGTAGCTCTGGAAGAGGGCAGAAC 1545
Query 1577 CAGAGAAACCAGCAATACGGATGGCAACAGTAAAGAGCTCTAATGATTTGTTGATCTGAT 1636
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 CCGAGAAACCAGCAATACGGATGGCAACAGTAAAGAGCTCTAATGATTTGTTGATCTGAT 1605
Query 1637 ATCTTACTCTTACATTTAATGTGATACTAGTAATAAACTAATAATAGATTAATATGAGAA 1696
||||||||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 1606 ATCTTACTCTTACATTTAATGTGATACTAGTAA----C-AATA---GATTAATATGAGAA 1657
Query 1697 ACTGAATCTCTTTCTTTT 1714
| |||| |||||||||||
Sbjct 1658 ATTGAAACTCTTTCTTTT 1675
Score = 80.5 bits (43), Expect = 4e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 7 GAGAAAAGGAAAGCGATCGAGAAAGACGTAATTTGATCATCGGAGT 52
|||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GAGAAAAGGAAAGCGATCGAGAAAGACGAAATTTGATCATCGGAGT 46
> Ahg951336 jgi|Araly1|951336|scaffold_803223.1
Length=1587
Score = 1611 bits (872), Expect = 0.0
Identities = 1297/1498 (87%), Gaps = 46/1498 (3%)
Strand=Plus/Plus
Query 110 GGGCAGCTAAATCTCGAGGAACCTCCTCCAATCTGGGGATCTCGCAGCGTTGATTGCTTT 169
|||||| ||||||||||||| ||||| || || ||||||||||| || || ||||||||
Sbjct 41 GGGCAGTTAAATCTCGAGGAGCCTCCACCGATTTGGGGATCTCGTAGTGTCGATTGCTTC 100
Query 170 GAGAAGCTCGAACAAATTGGTGAAGGCACTTACGGTCAAGTTTACATGGCTAAAGAAATC 229
|||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 101 GAGAAGCTTGAACAGATTGGTGAAGGAACTTACGGTCAAGTGTACATGGCTAAAGAAATT 160
Query 230 AAAACTGGTGAAATTGTGGCTCTCAAAAAGATACGTATGGACAATGAAAGAGAAGGGTTT 289
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 161 AAAACTGGTGAAATCGTGGCTCTCAAAAAGATCCGTATGGACAATGAAAGAGAAGGGTTT 220
Query 290 CCTATAACAGCTATTAGAGAGATAAAGATTCTGAAGAAGCTTCATCATGAAAATGTCATT 349
|| ||||||||||| | |||||||| |||||||||||||| |||||||||||||||||
Sbjct 221 CCGATAACAGCTATCCGGGAGATAAAAATTCTGAAGAAGCTACATCATGAAAATGTCATC 280
Query 350 CAGCTGAAAGAGATTGTGACTTCACCAGGTCGGGACAGGGATGACCAAGGAAAGCCAGAT 409
|| ||||||||||||||||||| |||||||| || |||||||| |||||||||||||||
Sbjct 281 CATTTGAAAGAGATTGTGACTTCTCCAGGTCGAGATAGGGATGATCAAGGAAAGCCAGAT 340
Query 410 AATAACAAATACAAGGGTGGCATCTACATGGTTTTTGAGTACATGGATCATGATTTGACT 469
||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 341 AATAATAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATCATGACTTGACT 400
Query 470 GGACTAGCAGATCGTCCTGGACTGAGATTTACTGTTCCTCAAATTAAGTGTTACATGAAG 529
||||| || |||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 401 GGACTTGCTGATCGTCCTGGACTGAGATTTACTGTCCCTCAGATAAAGTGTTACATGAAG 460
Query 530 CAATTGCTTACCGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAA 589
||| |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 CAACTGCTCACTGGGCTCCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAA 520
Query 590 GGCTCAAATCTCCTTATCGACAATGAGGGAAATTTAAAGCTGGCTGATTTTGGGCTTGCA 649
|| || || || ||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 521 GGTTCGAACCTACTTATTGACAATGAGGGAAATTTAAAGCTTGCGGATTTTGGGCTTGCT 580
Query 650 CGGTCGTATTCTCATGATCATACTGGAAATCTTACAAATCGTGTCATCACATTGTGGTAT 709
||||| | ||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 581 CGGTCATTTTCTCATGATCATACTGGAAACCTTACAAACCGTGTCATCACATTGTGGTAT 640
Query 710 AGGCCCCCTGAATTACTACTTGGGGCTACAAAATATGGCCCAGCAATTGACATGTGGTCG 769
||||| || ||||| |||||||| || || |||||||| ||||| |||||||||||||||
Sbjct 641 AGGCCTCCGGAATTGCTACTTGGTGCAACTAAATATGGACCAGCGATTGACATGTGGTCG 700
Query 770 GTTGGTTGCATATTTGCCGAACTTTTGCATGCAAAACCAATCTTACCTGGGAAAAATGAG 829
||||| ||||||||||| |||||| || ||| |||||||||||| |||||||||| ||||
Sbjct 701 GTTGGATGCATATTTGCTGAACTTCTGAATGGAAAACCAATCTTGCCTGGGAAAACTGAG 760
Query 830 CA-AGAACAATTGAACAAGATATT-TGAGCTTTGTGGATCACCTGATGAAAAAC-TTTGG 886
| |||||| |||| ||||| || ||| |||||||||||||| |||| ||||| |||
Sbjct 761 -AGTGAACAACTGAATAAGAT-TTATGAACTTTGTGGATCACCGGATG-AAAACAACTGG 817
Query 887 CCTGGGGTTTCCAAGATGCCTTGGT-TCAACAATTTCAAGCCTGCACGGCCCTTGAAGAG 945
||||| ||||||||||||||||||| | ||| | || | | | |||||||| |||||
Sbjct 818 CCTGGAGTTTCCAAGATGCCTTGGTATGGCCAAATGAAATCAT-CTCGGCCCTTAAAGAG 876
Query 946 GCGTGTAAGAGAGTTCTTCAGACACTTTGATCGGCATGCTCTTGAATTACTGGAGAAAAT 1005
|| ||||| ||| ||| ||| ||||||||||| ||||| |||||| |||| ||||||||
Sbjct 877 ACGCGTAAGGGAGATCTACAGGCACTTTGATCGCCATGCCCTTGAACTACTTGAGAAAAT 936
Query 1006 GTTGGTGCTTGATCCAGCACAGAGAATATCGGCAAAGGATGCTCTTGATGCCGAGTACTT 1065
|||||| ||||| ||||| ||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 937 GTTGGTACTTGACCCAGCCCAGAGAATATCTGCAAAGGATGCACTTGATGCTGAGTACTT 996
Query 1066 TTGGACTGATCCGTTGCCATGTGACCCAAAGAGTCTGCCCACATATGAATCATCACATGA 1125
||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 997 TTGGACTGATCCGCTGCCATGTGATCCAAAGAGTCTACCGACATATGAATCATCACATGA 1056
Query 1126 GTTCCAGACAAAGAAAAAGCGGCAACAGCA-GCGCCAAAACGAGGAAGCAGC-AAAAAGA 1183
|||||||||||||||||||||||||||| | |||||| |||||||||||||| ||||| |
Sbjct 1057 GTTCCAGACAAAGAAAAAGCGGCAACAG-ATGCGCCATAACGAGGAAGCAGCCAAAAA-A 1114
Query 1184 CAGAAACTGCAGCATCCACCGCTGCAGCACTCTCGCTTACCCCCATTA-CAACATGGTG- 1241
|||||||||||||||||||||| ||| || ||||| ||||| ||| | ||||| ||||
Sbjct 1115 CAGAAACTGCAGCATCCACCGCAGCAACATTCTCGTTTACCTCCAC-AGCAACACGGTGT 1173
Query 1242 -GA-CAGTCTCATGCTGCTCCACATTGGCCTGCAGGTCCAAACCATCCC-ACT-AACAAC 1297
| ||||||||||| ||||||||||||||||| ||||||||||| ||| | | ||||||
Sbjct 1174 TGGTCAGTCTCATGCCGCTCCACATTGGCCTGCTGGTCCAAACCA-CCCTA-TGAACAAC 1231
Query 1298 ---GCACCACCAC---AAGTACCTGCTGG---ACCCAGCCACAACTT-CTATGGGAAGCC 1347
|||||||||| || |||||||||| ||| || | | || |||||| |||||
Sbjct 1232 AACGCACCACCACCCCAAATACCTGCTGGTGGACCTGGCGGCCA-TTACTATGGAAAGCC 1290
Query 1348 GCGTGGTC---CACCTGGTCCAAACCGCTACCCTCCTAGCGGAAACCAGAGCGGG-GGTT 1403
|||||| ||||||||| |||||| |||||||||||||| |||||| | || ||||
Sbjct 1291 CCGTGGTGGTGCACCTGGTCAAAACCGGTACCCTCCTAGCGGGAACCAGC-CTGGTGGTT 1349
Query 1404 ATAATCA--A-AGCCGAGGAGGTTACAGCAGTGGATCATATCCTCCACAAGGACGTGGAG 1460
||||| | | ||||| |||||||||||||| |||||||||||||||||||| || || |
Sbjct 1350 ATAATAATCAGAGCCGTGGAGGTTACAGCAGCGGATCATATCCTCCACAAGGTCGAGGTG 1409
Query 1461 CTCCTTATGTGGCTGGTCCTAGAGGGCCTAGTGGTGGCCCGTACGGGGTTGGACCTCCTA 1520
| || |||| || ||||||||||| ||||| |||||| || || |||||||| ||||
Sbjct 1410 CACCATATGCCGCCGGTCCTAGAGGACCTAGCGGTGGC---TATGGTGTTGGACCGCCTA 1466
Query 1521 ACTACACACAAGGTGGT---CAGTATGGTGGCTCTGGTAGCTCGGGAAGAGGGCAGAA 1575
||||| | ||||||||| ||||| ||||| |||||| |||| |||||||| |||||
Sbjct 1467 ACTACTCCCAAGGTGGTGGTCAGTACGGTGGATCTGGTGGCTCTGGAAGAGGTCAGAA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64410604295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5