BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10278.1
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487854 jgi|Araly1|487854|fgenesh2_kg.6__988__AT5G10278.2 673 0.0
Ahg487856 jgi|Araly1|487856|fgenesh2_kg.6__990__AT5G10280.1 244 7e-64
> Ahg487854 jgi|Araly1|487854|fgenesh2_kg.6__988__AT5G10278.2
Length=1985
Score = 673 bits (364), Expect = 0.0
Identities = 396/410 (97%), Gaps = 8/410 (2%)
Strand=Plus/Plus
Query 428 TTTGAATTTTGTGCACGGAACCTGTGATCTTCATTATATAGAAGACACAGAAGAAAAAGA 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 TTTGAATTTTGTGCACGGAACCTGTGATCTTCATTATATAGAAGACACAGAAGAAAAAGA 1611
Query 488 CAAGAGCTCAAGATATGCCATTGGGTGCAATACTTAGGCTGAGGGAGAAAGTCTTATAGG 547
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1612 CAAGAGCTCAAGATATGCCATTGGGTGCAATACTAAGGCTGAGGGAGAAAGTCTTATAGG 1671
Query 548 TTTTAAAGATGGTGGAGATTTAGATCATTTTCTGCACCCACCTCTCCCCTAACCAGCTCC 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 TTTTAAAGATGGTGGAGATTTAGATCATTTTCTGCACCCACCTCTCCCCTAACCAGCTCC 1731
Query 608 TCCCTAGTGGTCAAAATCTGTCATATCAAGCCTGTCACCATCATCAATAGGGTTTGGTAC 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 TCCCTAGTGGTCAAAATCTGTCATATCAAGCCTGTCACCATCATCAATAGGGTTTGGTAC 1791
Query 668 TAGGGCATAGTGATGGCAACTAATGAACTGCTTCCCAATTAAAGACAAAAAACAA-ATCG 726
||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||
Sbjct 1792 TAGGGCATAGTGATGGCTACTTATGAACTGCTTCCCAATTAAAGACAAAAAT-AAGATCG 1850
Query 727 ATTG-T-T--ATGTGTTTGTCCGTTGGAGACGGCTGTTCCCGAGATGATACTGAT-GTTG 781
|||| | | |||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1851 ATTGGTATGTATGTGTTTGTCCATTGGAGACGGCTGTTCCCGAGATGATACTGATCGTTG 1910
Query 782 CTTTAAGACAAGAGGAAGAATTTACATTGAATGAT-TTTTATCACACTGG 830
||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1911 CTTTAAGACAAGAGGAAGAATTTACATTGAATGATATTTTTTCACACTGG 1960
Score = 272 bits (147), Expect = 3e-72
Identities = 157/162 (97%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 239 GATGTTCCAGCAATGTTGGGCGTAACGGTTGAGAAAAGTATGTGCTAATTTACTATTCTA 298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 410 GATGTTCCAGCAATGTTGGGCGTAACCGTTGAGAAAAGTATGTGCTAATTTACTATTCTA 469
Query 299 AATGAAGAGTAAGCAAGAAGATGTTGAACCGTCACCACTCTCGTCACTCATTGGAATTTC 358
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 470 AATGAAGAGTAAGCAAGAAGATTTTGAACCGTCACCACTTTCGTCACTCATTGGAATTTC 529
Query 359 ATTCAGGAACCTAACCTATGCTGATGATATTCGAATCACGAG 400
||||||||||||||| |||||||||||||||||||||||||
Sbjct 530 ATTCAGGAACCTAACGGATGCTGATGATATTCGAATCACGAG 571
Score = 219 bits (118), Expect = 4e-56
Identities = 198/233 (85%), Gaps = 20/233 (9%)
Strand=Plus/Plus
Query 1 GGTGAACTCAATCAAAACCGACTTGATCATAAAG-C-CACTACTAATCC-TTTT-TTCAG 56
||| |||||||| |||||||| ||| |||||| | |||||||||||| |||| |||||
Sbjct 40 GGTAAACTCAATTAAAACCGAGTTG---ATAAAGCCACACTACTAATCCTTTTTGTTCAG 96
Query 57 TTCTAAACACTCttt-ttttt-CTGTACCACTTTGC---A-A--TAGATGCATGACAGAT 108
||||||||||||||| ||||| ||||||||||||| | | ||||||||||||||||
Sbjct 97 TTCTAAACACTCTTTGTTTTTAGTGTACCACTTTGCAATAGATGTAGATGCATGACAGAT 156
Query 109 GATGCTTATATACCATGATGAGGAGTGGAAGTATCATTCaaaaaaaTATTATATGAATAC 168
||||||||||||| ||||||| || |||||||||||| ||| |||||||||||||||||
Sbjct 157 GATGCTTATATACTATGATGATGAATGGAAGTATCATACAATGAAATATTATATGAATAC 216
Query 169 CTTAAAAGGGTCT-TGGAGATGCA-A-ATTCTTGAACAAGAATAGAAAGAGAT 218
||||||||||| | ||||||| || | | |||||||| | || |||||||||
Sbjct 217 CTTAAAAGGGT-TGTGGAGATACATACAA-CTTGAACAGGGATGGAAAGAGAT 267
> Ahg487856 jgi|Araly1|487856|fgenesh2_kg.6__990__AT5G10280.1
Length=1412
Score = 244 bits (132), Expect = 7e-64
Identities = 148/155 (95%), Gaps = 4/155 (3%)
Strand=Plus/Plus
Query 837 GGAAAGAAGCACGTGGTGAATGGACATGAAGAGAAAAGGATGCTAGGTTTAATATAAATT 896
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAAAGAGGCACGTGGTGAATGGACATGAAGAGAAAAGGATGCTAGGTTTAATATAAATT 60
Query 897 GGAATAAGAAGCAGTTAGTGGTTGTGAAGGAAGGAAGGAGGCAAGCAACCAAATCTCAGA 956
||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct 61 GGAATAAGAAGCAGTTAGTGGTTGTGAAGGAAGGA-GG---CAAGTAACCAAATCTCAGA 116
Query 957 GACAATTATAACAGTATAGAGAAGGAAGAAAGAAA 991
|||||||||||||||||||||||||||| ||||||
Sbjct 117 GACAATTATAACAGTATAGAGAAGGAAGGAAGAAA 151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36826737822
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5