BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10280.1
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487856 jgi|Araly1|487856|fgenesh2_kg.6__990__AT5G10280.1 1982 0.0
Ahg496754 jgi|Araly1|496754|fgenesh2_kg.8__2570__AT5G65230.1 538 4e-152
> Ahg487856 jgi|Araly1|487856|fgenesh2_kg.6__990__AT5G10280.1
Length=1412
Score = 1982 bits (1073), Expect = 0.0
Identities = 1253/1334 (94%), Gaps = 36/1334 (3%)
Strand=Plus/Plus
Query 1 GGAAAGAAGCACGTGGTGAATGGACATGAAGAGAAAAGGATGCTAGGTTTAATATAAATT 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAAAGAGGCACGTGGTGAATGGACATGAAGAGAAAAGGATGCTAGGTTTAATATAAATT 60
Query 61 GGAATAAGAAGCAGTTAGTGGTTGTGAAGGAAGGAAGGAGGCAAGCAACCAAATCTCAGA 120
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 61 GGAATAAGAAGCAGTTAGTGGTTGT----GAAGGAAGGAGGCAAGTAACCAAATCTCAGA 116
Query 121 GACAATTATAACAGTATagagaaggaagaaagaaaagaaaaagaaaccgttgttgattta 180
|||||||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 117 GACAATTATAACAGTATAGAGAAGGAAG---G--AAGAAAAAGAAACCATTGTTGATTTA 171
Query 181 gatacagagaagagaagaTCATCTAACATGGGAAGATCTCCTATCTC-TGATGACTCTGG 239
||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 172 GATAC-----AGAGAAGATCATCTAACATGGGAAGATCTCCTATC-CGTGATGACTCTGG 225
Query 240 TCTCAAGAAAGGTCCTTGGACTCCTGATGAAGATGAGAAACTTGTCAACTATGTTCAAAA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 226 TCTCAAGAAAGGTCCTTGGACTCCTGATGAAGATGAGAAACTTGTCAACTATGTCCAAAA 285
Query 300 ACATGGTCATAGTAGCTGGAGAGCCCTTCCCAAACTCGCTGGTCTTAACAGGTGTGGGAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 ACATGGTCATAGTAGCTGGAGAGCCCTTCCCAAACTCGCTGGTCTTAACAGGTGTGGGAA 345
Query 360 GAGTTGCAGGCTAAGATGGACGAACTACTTGAGACCAGACATCAAGAGAGGGAGATTCTC 419
||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||
Sbjct 346 GAGTTGCAGGCTAAGATGGACTAATTACTTGAGACCCGACATCAAGCGAGGGAGATTCTC 405
Query 420 TCCGGACGAGGAACAGACTATCTTGAATCTTCATTCAGTTCTTGGAAACAAGTGGTCAAC 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 406 TCCGGACGAGGAACAGACTATCTTGAACCTTCATTCAGTTCTTGGAAACAAGTGGTCAAC 465
Query 480 GATTGCGAATCAGTTACCAGGGAGAACAGATAACGAGATCAAGAATTTCTGGAACACTCA 539
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 466 GATTGCAAATCAGTTACCAGGGAGAACAGACAACGAGATCAAGAATTTCTGGAACACCCA 525
Query 540 TTTGAAGAAGAAGCTGATTCAGATGGGTTTTGATCCAATGACTCACCGTCCAAGAACCGA 599
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 526 TTTGAAGAAAAAGCTGATTCAGATGGGTTTTGACCCAATGACTCATCGTCCAAGAACCGA 585
Query 600 TATCTTCTCCGGCTTATCTCAGCTCATGTCTTTGTCTTCTAACCTGAGAGGCTTTGTTGA 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TATCTTCTCTGGCTTATCTCAGCTCATGTCTTTGTCTTCTAACCTGAGAGGCTTTGTTGA 645
Query 660 TCTGCAACAACAGTTTCCTATTGATCAAGAACACACTATACTCAAACTCCAAACCGAGAT 719
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 646 TCTGCAGCAACAGTTTCCGATTGATCAAGAACACACTATACTCAAACTCCAAACCGAGAT 705
Query 720 GGCCAAACTCCAATTGTTCCAATACCTTCTTCAACCGTCTTCCATGAGTAACAATGTTAA 779
||||||||| |||||||| ||||||||||||||||| |||||||||| || || | | ||
Sbjct 706 GGCCAAACTTCAATTGTTTCAATACCTTCTTCAACCATCTTCCATGAATAGCA-T-T-AA 762
Query 780 CCCTAATGACTTTGACACTCTCAGTCTCCTTAACTCTATTGCCTCTTTCAAAGAGACCAG 839
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 763 CCCTAATAACTTTGACACTCTCAGTCTCCTTAACTCTATTGCCTCCTTCAAAGAGACCAG 822
Query 840 TAATAATACCACCAGCAACAATCTCGACCTCGGTTTCCTCGGCTCTTATCTTCAGGACTT 899
|| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 823 TACTAATACCACCAGCAACAATCTCGACCTCGGTTTCCTCGGTTCATATCTTCAGGACTT 882
Query 900 CCACAGCTTACCTTCCCTGAAAACCCTAAATTCCAACATGGAACCATCATCTGTTTTCCC 959
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 883 CAACAGCTTACCATCCCTGAAAACCCTAAATTCCAACATGGAACCATCATCTGTTTTACC 942
Query 960 CCAGAATCTTGATGACAATCACTTCAAATTCTCCACTCAAAGAGAAAACCTACCCGTGTC 1019
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 943 CCAGAATCTTGATGACAATCACTTCAAATTCTTCACTCAAAGAGAAAACCTACCGGTGTC 1002
Query 1020 TCCAATCTGGCTCTCGGATCCATCCAGC--A-C--A-A--C-T---CCTGCT-CATGTGA 1066
||||||||||||||||||||| |||||| | | | | | | ||| || | |||||
Sbjct 1003 TCCAATCTGGCTCTCGGATCCCTCCAGCGCAACTCAGAGTCATATACCTTCTGC-TGTGA 1061
Query 1067 ATGATGATCTGATTTTTAACCAATACGGTATTGAAGATGTCAATAGCAATATCACATCTT 1126
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 ATGATGATCTGATTTTAAACCAATACGGTATTGAAGATGTCAATAGCAATATCACATCTT 1121
Query 1127 CAAGCGGTCAAGAATCAGGAGCTTCAGCTTCAGCTGCATGGCCTGATCATCTATTGGATG 1186
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1122 CAAGCGGTCAAGAATCAGCAGCTTCAGCTTCAGCTGCATGGCCTGAGCATCTATTGGATG 1181
Query 1187 ATTCTATATTTTCCGACATTCCTTAGCC-TTCTTTTGTCTTTACTTTCAGGTATGTACTT 1245
||||||||||||| |||||||||||||| |||||||||||| | |||||||| ||| ||
Sbjct 1182 ATTCTATATTTTCGGACATTCCTTAGCCCTTCTTTTGTCTTAATTTTCAGGTCTGT--TT 1239
Query 1246 TGGAGGAACTCAAATCAAATTTACTCTTGGAATTGTGCTTGTTGGAGATTTTTATTTGCC 1305
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1240 TGGAGGAACTCAAATCGAATTTACTCTTGGAATTGTGCTTGTTGGAGAATTTTATTTGCA 1299
Query 1306 TATCtatatatata 1319
||||||||||||||
Sbjct 1300 TATCTATATATATA 1313
Score = 124 bits (67), Expect = 1e-27
Identities = 77/81 (95%), Gaps = 3/81 (4%)
Strand=Plus/Plus
Query 1350 ACTCATGTTGTAGAATGTACAGTACAGAGATTTCATA-CTCATATGCATATGTTGTTGTC 1408
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1313 ACTCATGTTGTAGAATGTACAGTACAGAGATTTCATAACTCATATGCAT--GTTGTTGTC 1370
Query 1409 AATGTTCTTTAGCATATGTCT 1429
|||||||| ||||||||||||
Sbjct 1371 AATGTTCTCTAGCATATGTCT 1391
> Ahg496754 jgi|Araly1|496754|fgenesh2_kg.8__2570__AT5G65230.1
Length=1174
Score = 538 bits (291), Expect = 4e-152
Identities = 507/610 (83%), Gaps = 19/610 (3%)
Strand=Plus/Plus
Query 208 ATGGGAAGATCTCCTATCTCTGATGACTCTGGTCTCAAGAAAGGTCCTTGGACT-CCTGA 266
|||||||||||||||| ||| || || | ||||| ||||||||||| ||| | |||||
Sbjct 1 ATGGGAAGATCTCCTAGCTCAGACGAAACCGGTCTGAAGAAAGGTCCATGG-TTGCCTGA 59
Query 267 TGAAGATGAGAAACTTGTCAACTATGTTCAAAAACATGGTCATAGTAGCTGGAGAGCCCT 326
|||||||| ||||| |||| ||| | || |||||||| ||||| |||||||| |||||
Sbjct 60 AGAAGATGATAAACTCATCAATTATATCCACAAACATGGCCATAGCAGCTGGAGTGCCCT 119
Query 327 TCCCAAACTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACGAACTA 386
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 120 TCCCAAGCTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTACGATGGACAAACTA 179
Query 387 CTTGAGACCAGACATCAAGAGAGGGAGATTCTCTCCGGACGAGGAACAGACTATCTTGAA 446
|||||||| ||||| ||| |||| | |||||| | || || ||| |||| ||| ||||
Sbjct 180 TTTGAGACCGGACATTAAGCGAGGAAAATTCTCAGCTGAAGAAGAAGAGACCATCCTGAA 239
Query 447 TCTTCATTCAGTTCTTGGAAACAAGTGGTCAACGATTGCGAATC-AGTTACCAGGGAGAA 505
|||||| | |||||||| ||||||||||||| |||||| || | | ||||| || ||||
Sbjct 240 CCTTCATGCGGTTCTTGGCAACAAGTGGTCAATGATTGC-AAGCCACTTACCTGGAAGAA 298
Query 506 CAGATAACGAGATCAAGAATTTCTGGAACACTCATTTGAAGAAGAAGCTGATTCAGATGG 565
| || |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 299 CTGACAACGAGATCAAGAATTTCTGGAACACTCATTTGAAGAAAAAACTGATTCAGATGG 358
Query 566 GTTTTGATCCAATGACTCACCGTCCAAGAACCGAT-AT--CTTCTCCGGCTTATCTCAGC 622
||||||| || |||||||| || |||||||||||| || |||||| ||||||||||||
Sbjct 359 GTTTTGACCCCATGACTCATCGGCCAAGAACCGATGATATCTTCTCAAGCTTATCTCAGC 418
Query 623 TCATGTCTTTGTCTTCTAACCTGAGAGG-CTTTGTTGATCTGCAACAACAGTTTCCTATT 681
|||||||| ||||| ||||| ||||| ||| ||||||||||| ||||||||||| |||
Sbjct 419 TCATGTCTCTGTCT---AACCTAAGAGGACTT-GTTGATCTGCAGCAACAGTTTCCAATT 474
Query 682 GATCAAGAACACACTATACTCAAACTCCAAACCGAGATGGCCAAACTCCAATTGTTCCAA 741
|| | || || || | | || |||||||| |||||||| || || || ||||||||
Sbjct 475 GA--A-GATCATGCTCGAATGAATCTCCAAACTGAGATGGCTAAGCTGCAGTTGTTCCAT 531
Query 742 TACCTTCTTCAA-C-CGTCTTCCATGAGTAACAATGTTAACCCTAATGACTTTGACACTC 799
|||||||||||| | | || ||| | || |||| |||||||||||||||| ||| ||
Sbjct 532 TACCTTCTTCAATCTCCTCCTCC-TCC-TAGCAATATTAACCCTAATGACTTAAACATTC 589
Query 800 TCAGTCTCCT 809
||| ||||||
Sbjct 590 TCAATCTCCT 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54849952800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5