BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10300.1
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487858 jgi|Araly1|487858|fgenesh2_kg.6__992__AT5G10300.1 1336 0.0
> Ahg487858 jgi|Araly1|487858|fgenesh2_kg.6__992__AT5G10300.1
Length=892
Score = 1336 bits (723), Expect = 0.0
Identities = 799/837 (95%), Gaps = 0/837 (0%)
Strand=Plus/Plus
Query 30 AAGAACCTTAACCAAAAAGAAAACGTCTACGGAGACATATGGAGAGGAAACATCACTTCG 89
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1 AAGAACCTTAACCAAAAAGAAAACGTCTACCGAGACTTATGGAGAGGAAACATCACTTCG 60
Query 90 TGTTAGTTCACAACGCTTATCATGGAGCCTGGATCTGGTACAAGCTCAAGCCCCTCCTTG 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTTAGTTCACAACGCTTATCATGGAGCCTGGATCTGGTACAAGCTCAAGCCCCTCCTTG 120
Query 150 AATCAGCCGGCCACCGCGTTACTGCTGTCGAACTCGCCGCCTCCGGGATCGACCCACGAC 209
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 AGTCCGCCGGCCACCGCGTTACTGCTGTCGAACTCGCCGCCTCCGGGATCGATCCACGAC 180
Query 210 CAATCCAGGCCGTTGAAACCGTCGACGAATACTCCAAACCGTTGATCGAAACCCTCAAAT 269
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAATCCAGGCCGTTGGAACCGTCGACGAATACTCCAAACCGTTGATCGAAACCCTCAAAT 240
Query 270 CTCTTCCAGAGAACGAAGAGGTAATTCTGGTTGGATTCAGCTTCGGAGGCATCAACATCG 329
||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||| |
Sbjct 241 CTCTTCCAGAGAACGAACAGGTGATTCTCGTTGGATCCAGCTTCGGAGGCATCAACATTG 300
Query 330 CTCTCGCCGCCGACATATTTCCGGCGAAGATTAAGGTTCTTGTGTTCCTCAACGCCTTCT 389
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCTCGCCGCCGACATATTCCCGGCGAAGATTAAGGTTCTTGTGTTCCTCAACGCCTTCT 360
Query 390 TGCCCGACACAACCCACGTGCCTTCTCACGTTCTGGACAAGTATATGGAGATGCCTGGAG 449
|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 361 TGCCCGACACAACCCATGTGCCTTCTCATGTTCTTGACAAGTATATGGAGATGCCCGGAG 420
Query 450 GTTTGGGAGATTGTGAGTTTTCATCTCATGAAACAAGAAATGGGACGATGAGTTTATTGA 509
| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 421 GGTTGGGAGATTGTGAATTTTCATCTCACGAAACAAGAAATGGGACAATGAGTTTATTGA 480
Query 510 AGATGGGACCAAAATTCATGAAGGCACGTCTTTACCAAAATTGTCCCATAGAGGATTACG 569
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 481 AGATGGGACCAAAATTCATGAAGGCTCGTCTTTACCAAAATTGTCCCATCGAGGATTACG 540
Query 570 AGCTGGCAAAAATGTTGCATAGGCAAGGGTCATTTTTCACAGAGGATCTATCAAAGAAAG 629
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCTGGCAAAGATGTTGCATAGGCAAGGGTCATTTTTCACAGAGGATCTATCAAAGAAAG 600
Query 630 AAAAGTTTAGCGAGGAAGGATATGGTTCGGTGCAACGAGTTTACGTAATGAGTAGTGAAG 689
||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 601 AAAAGTTTAGCGAGGAAGGGTATGGTTCAGTGCAACGAGTTTACATAATGAGTAGTGAAG 660
Query 690 ACAAAGCCATCCCCTGCGATTTCATTCGTTGGATGATTGATAATTTCAACGTCTCGAAAG 749
| |||||||| |||||| ||||||||||||||||||| || |||||||||||||| ||||
Sbjct 661 ATAAAGCCATTCCCTGCAATTTCATTCGTTGGATGATCGACAATTTCAACGTCTCAAAAG 720
Query 750 TCTACGAGATCGATGGCGGAGATCACATGGTGATGCTCTCCAAACCCCAAAAACTCTTTG 809
||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 TCTACGAGATCGACGGTGGAGATCACATGGTGATGCTCTCCAAACCCCAACAACTCTTTG 780
Query 810 ACTCTCTCTCTGCTATTGCCACCGATTATATGTAATAATCTTAAGTCCGTTTTACTT 866
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 781 ACTCTCTCTCTGCTATTGCCGCCGATTATATGTAATAAACTAAAGTCCGTTTTACTT 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36788614905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5