BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10310.1
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487859 jgi|Araly1|487859|fgenesh2_kg.6__993__AT5G10310.1 852 0.0
> Ahg487859 jgi|Araly1|487859|fgenesh2_kg.6__993__AT5G10310.1
Length=597
Score = 852 bits (461), Expect = 0.0
Identities = 566/613 (92%), Gaps = 21/613 (3%)
Strand=Plus/Plus
Query 39 tctctctctctGTTTTTCTTTTTCAAACAAAATATTGAAATTTCACTAGACCCACATGAA 98
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1 TCTCTCTCTCTGTTTTTCTTTTTCAAACAAAATCTTGAAATTTCAATAGACCCACATGAA 60
Query 99 GCTCCTCCTTTATAGTAGTAATTCTTGAATCCAACTCAAAAATGTTTGCTATATACAAAT 158
||||||||| ||||||||||||||||||||| ||||| |||||||| ||||| |||||||
Sbjct 61 GCTCCTCCTCTATAGTAGTAATTCTTGAATCAAACTC-AAAATGTTAGCTATTTACAAAT 119
Query 159 CAACCcttcttcttcttcctctcattctcattcttctcatcactccacaagtctcatcct 218
||| | | ||| || || |||||||| |||||||||||||||| ||||||||||
Sbjct 120 CAA-----C--C--CTT-CT-TC-TTCTCATTGTTCTCATCACTCCACATGTCTCATCCT 167
Query 219 ttcttcaACCTATCCAACCTCCTATTTCTCCTCAAGTCGCTTTGATTGAAGATAAAGCAA 278
||||||||||| |||||||||| | ||| |||||||| ||||||||||||||||||||||
Sbjct 168 TTCTTCAACCTGTCCAACCTCCGAATTCCCCTCAAGTGGCTTTGATTGAAGATAAAGCAA 227
Query 279 GATTAGGTTCAACACCACCAAGCTGCCACAACAGATGCAACAACTGCCATCCTTGCATGG 338
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 GATTAGGTTCTACACCACCAAGCTGCCACAACAGATGCAACAACTGCCATCCTTGCATGG 287
Query 339 CTATTCAAGTACCAACTCTCCCGACTCGCTCCCGCTTCACACGAGTTAACCCGTTTTCCG 398
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 288 CTATTCAAGTACCAACTCTCCCGACTCGCTCCCGGTTCACACGAGTTAACCCGTTTTCCG 347
Query 399 GTGGATTCGTACGACCTCCTTCTTCTCTAACCACCGTTCTTGATCAGTACTCTAATTACA 458
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GTGGTTTCGTACGACCTCCTTCTTCTCTAACCACCGTTCTTGATCAGTACTCTAATTACA 407
Query 459 AACCTATGGGATGGAAATGTCATTGCAATGGCCACTTTTATAATCCTTAATTCATGGTTT 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 AACCTATGGGATGGAAATGTCATTGCAATGGCCACTTTTATAATCCTTAATTCATGGTTT 467
Query 519 GATCTC-CTACTCTGTTATTTTTT-ATTTATAAGTTTCTGAAAC-ATTAATTTTTGTGGG 575
|||||| || || |||| |||||| ||||| | |||||| ||| ||| |||||||||||
Sbjct 468 GATCTCTCT-CTTTGTTTTTTTTTTATTTA-A-GTTTCTAAAAATATTGATTTTTGTGGG 524
Query 576 AGAAGATTTGTTCTTTGGATTCTTTGTATATGTACGGCTCAATTTGT--AAATAATCAAA 633
|| ||| |||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 525 AGCAGAGGTGTTCTTTGGATTCTTTGTAAATGTACGGCTCAATTTGTGTAAATAATCAAA 584
Query 634 AAGTTCTATGATT 646
|||||| ||||||
Sbjct 585 AAGTTCCATGATT 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24055560627
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5