BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10320.1
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487861 jgi|Araly1|487861|fgenesh2_kg.6__995__AT5G10320.1 1472 0.0
Ahg947105 jgi|Araly1|947105|scaffold_703334.1 196 3e-49
Ahg891043 jgi|Araly1|891043|Al_scaffold_0007_3029 110 4e-23
> Ahg487861 jgi|Araly1|487861|fgenesh2_kg.6__995__AT5G10320.1
Length=1539
Score = 1472 bits (797), Expect = 0.0
Identities = 917/974 (94%), Gaps = 12/974 (1%)
Strand=Plus/Plus
Query 71 GAATCGTTTTTGTGACAAAATCTGTTAAAAGAGTTTCATTATTT-TTGATGGAAGAGCTA 129
||||||||||||||| ||||| |||| |||||||||||||||| ||||||||||||
Sbjct 29 GAATCGTTTTTGTGAGAAAATATGTT--AAGAGTTTCATTATTTGAAAATGGAAGAGCTA 86
Query 130 AAGAGACTGGAGAAGTTTCAGACTGTTGTATCATCCATTACTTGTCACGGTTTAc--t-t 186
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | |
Sbjct 87 AAGAGACTGGAGAAGTTTCAGAGTGTTGTATCATCCGTTACTTGTCACGGTTTACTTTCT 146
Query 187 tcttcttcatcttccgattcagcttcttcttctcgcttcctctccaatctagtccttttc 246
||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 147 TCTTCTTCAACCTCCGATTCAGCTTCTTCTTCTCGCTTCCTCTCCAATCTCGTCCTTTTC 206
Query 247 cTGGTACAACCATGCGGCGAACTCGATTTAGATTCGAAACTGGGTCTACTCTCTGAGTTC 306
|||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||
Sbjct 207 CTGGTACAACCATGCGGCGAACTCGATTCAGAATCGAAACTGGGTCTAGTCTCTGAGTTT 266
Query 307 TTACCGAAAATCTCAGGACCCTTCCTGGAAGAGATATCGAGATCACTTGAGCTAGACGAT 366
|||||||||||||||||||| || |||||| |||||||||| |||||||||| |||||||
Sbjct 267 TTACCGAAAATCTCAGGACCTTTTCTGGAAAAGATATCGAGGTCACTTGAGCAAGACGAT 326
Query 367 GAAGCTACTACACCACTTAACACAATTTCAGCAGAG--TGCCAAAATAGTTGTGTGAAGA 424
||||||||||||||| |||||||||||||||||||| || | ||| |||||||||||||
Sbjct 327 GAAGCTACTACACCAGTTAACACAATTTCAGCAGAGTCTG-C-AAAGAGTTGTGTGAAGA 384
Query 425 GGAGTGTCATGGACAATGTTGATCCTTACATGTCACAGAAGCACCAAGAAGTTGTGGCAA 484
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 385 GGAGTGTCATGGACAATGTTGATCCTTTCATGTCACAGAAGCACCAAGAAGTTGTGGCAA 444
Query 485 TGGTCGGGCTAGATGCAATGAAGAGAGCAAACTCTACACTTGAGGATTTCTCCAGGTCTT 544
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 445 TGGTCGGGCTAGATGCAATGAAAAGAGCAAACTCTACACTTGAGGATTTCTCCAGGTCTT 504
Query 545 ATTTCATGTTTCATCGGTTGGATATTAACGAACCGCAATCAATATTCAGATATTTACCTG 604
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 505 ATTTCATGTTCCATCGGTTGGATATTAACGAACCGCAGTCAATATTCAGATATTTACCAG 564
Query 605 TGCTTTCATTCACAGAGAGTTACATATATCAGATGGATGCTCTTAATGAGAAGATAGTCA 664
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 565 TGCTTTCATTCACAGAGAGTTACATATATCAGATGGATGCTCTTAATGAGAAGATAGTTA 624
Query 665 GTGAATCAGCTTGTGGATCCCAAGTCATTTATTCAAGTCATGGATGGAATGCTGAATCAC 724
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GTGAATCAGCTCGTGGATCCCAAGTCATTTATTCAAGTCATGGATGGAATGCTGAATCAC 684
Query 725 GAGTTCTGTTTGAAACTAATCCGTTGAAGCCGCTTGGAGATCTGCTTGAACGTGAGGCCC 784
||||| ||||||||||| |||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 685 GAGTTTTGTTTGAAACTGATCCATTGAAGCCGCTTGGAGATCAGCTTGAACGTGAGGGCC 744
Query 785 TTTTGAC-AAACAGAGTACAACAAGAGTTTAATTCGGGTGAAGAGTATTGGGCGTTAGAA 843
|||| || || ||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct 745 TTTTAACTCAA-AGAATACAACAAGAGTTTCAGTCGGGTGAAGAGTATTGGGCGTTAGAA 803
Query 844 AGAAAGCTTTGTCATGCACTTTCAAACAAAAACAAGATCTGTCTCGAAGATGTGATGAGA 903
|||||||| |||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 804 AGAAAGCTATGTCATGCTCTTTCAAACAAAAATAAGCTCTGTCTCGAAGATGTGATGAGA 863
Query 904 GCAATTCATTTGAAGTCCTTTGATTACAGGGTGTTGAATCTTCTACTATACAAGTTGAGA 963
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 GCAATTCATTTGAAGTCTTTTGATTACAGGGTGTTGAATCTTCTACTATACAAGTTGAGA 923
Query 964 GGAGAAGAGGTGAATGAGTTGCATATGGACTTCTTGTCAATCTCAGAGTTTCTGGTTGAA 1023
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 924 GGAGAAGAGGTGAATGAGTTGCATATGGACTTCTTGTCAATTTCAGAGTTCCTGGTTGAA 983
Query 1024 GTAGCGGATGATCT 1037
||||||||||||||
Sbjct 984 GTAGCGGATGATCT 997
Score = 743 bits (402), Expect = 0.0
Identities = 473/506 (93%), Gaps = 9/506 (2%)
Strand=Plus/Plus
Query 1049 AGGATGATGTTCTTGAGAACAATTTCAATGTATTACGTATGTTTGTGGGAATATTCGGCT 1108
|||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1042 AGGACGATGTTCTTGAGAACAGTTTCAATGTATTACGTATGTTTGTAGGAATATTCGGCC 1101
Query 1109 CATCGAATGCACCCACTGAACTGGCGAAGCGGATATCGGAAGCTGAAGAGAAGTATGAAG 1168
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1102 CATCAAATGCACCCACTGAACTGGCGAAGCGGATATCAGAAGCTGAAGAGAAGTATGAAG 1161
Query 1169 AGATTATGAAATCCCTGGATCCACATTTGTCTTCAAATTACCAAAGAAGATGTGAAGAAG 1228
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 AGATTATGAAATCTCTGGATCCACATTTGTCTTCAAATTACCAAAGAAGATGTGAAGAAG 1221
Query 1229 CTACTAAAGAAGGTGGGAAAATTTCTGGTCATTCGCTGGGAACATGGAACATACCGGCGG 1288
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1222 CTACTAAAGAAGGTGGGAAAATTTCTGGTCATTCGCTTGGAACATGGAACATACCGGCGG 1281
Query 1289 TTATCTCCGACGAAGAAGCATACCGATCTGCTCAACGGTAAA-CCGAGATTTAAGTCATG 1347
|||||||||||||||||||||||||| ||||| | |||| ||| |||||| || | |
Sbjct 1282 TTATCTCCGACGAAGAAGCATACCGAGCTGCT-A----TAAAACCGTGATTTA-GTTAAG 1335
Query 1348 GTTATATACCGGATTAAACCGGGAtttttttATTGTATCCTTGACCGAGACATGAATAGA 1407
||| ||||||||||||||||||||||||||| | |||||| || |||||||||||||||
Sbjct 1336 GTTGTATACCGGATTAAACCGGGATTTTTTT-T-GTATCCATGGCCGAGACATGAATAGG 1393
Query 1408 TGTAAGCTTGTGACCAAACATTCTTCGACCGTATAAAAGGAAAAAATAGTTTGAAGACTT 1467
||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||
Sbjct 1394 TGTAAGCTTGTGACCAAACATTCTTTGACCGTTTGAAAGGAAAAAATACTTTGAAGACTT 1453
Query 1468 TGTGACCTATGATGTATCAAAGGAGACAAAAGCCATTGACTCTTATAATTGGATCATGGA 1527
|||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct 1454 TGTGACCTATTATGTATCAAAGGAGACAAAAGCCATTGACTATTAGAATTGGATCATGCA 1513
Query 1528 ATAATAATTTCAGTTGTCTTACTGTG 1553
||||||||||||||||||||||||||
Sbjct 1514 ATAATAATTTCAGTTGTCTTACTGTG 1539
> Ahg947105 jgi|Araly1|947105|scaffold_703334.1
Length=248
Score = 196 bits (106), Expect = 3e-49
Identities = 135/148 (91%), Gaps = 6/148 (4%)
Strand=Plus/Plus
Query 715 GCTGAATCACGAGTTCTGTTTGAAACTAATCCGTTGAAGCCGCTTGGAGATCTGCTTGAA 774
||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 58 GCTGAATCACGAGTTTTGTTTGACACTAACCCGTTGAAGCCGCTTGGAGATCTGCTTGAA 117
Query 775 CGTGAGGCCCTTTTG--AC-AA--A-CAGAGTACAACAAGAGTTTAATTCGGGTGAAGAG 828
||||||| ||||||| || || | ||| |||||||||||||||| ||||||||||||
Sbjct 118 CGTGAGGGCCTTTTGACACAAAGTATTAGAATACAACAAGAGTTTAAGTCGGGTGAAGAG 177
Query 829 TATTGGGCGTTAGAAAGAAAGCTTTGTC 856
||||||||||||||||||||||||||||
Sbjct 178 TATTGGGCGTTAGAAAGAAAGCTTTGTC 205
> Ahg891043 jgi|Araly1|891043|Al_scaffold_0007_3029
Length=399
Score = 110 bits (59), Expect = 4e-23
Identities = 74/81 (91%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 713 ATGCTGAATCACGAGTTCTGTTTGAAACTAATC-CGTTGAAGCCGCTTGGAGATCTGCTT 771
||||||||||| ||||| ||||||| ||||| | ||||||| ||||||||||||||||||
Sbjct 218 ATGCTGAATCATGAGTTTTGTTTGACACTAA-CTCGTTGAAACCGCTTGGAGATCTGCTT 276
Query 772 GAACGTGAGGCCCTTTTGACA 792
|||||||||| ||||||||||
Sbjct 277 GAACGTGAGGGCCTTTTGACA 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58163804115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5