BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10320.1 Length=1553 Score E Sequences producing significant alignments: (Bits) Value Ahg487861 jgi|Araly1|487861|fgenesh2_kg.6__995__AT5G10320.1 1472 0.0 Ahg947105 jgi|Araly1|947105|scaffold_703334.1 196 3e-49 Ahg891043 jgi|Araly1|891043|Al_scaffold_0007_3029 110 4e-23 > Ahg487861 jgi|Araly1|487861|fgenesh2_kg.6__995__AT5G10320.1 Length=1539 Score = 1472 bits (797), Expect = 0.0 Identities = 917/974 (94%), Gaps = 12/974 (1%) Strand=Plus/Plus Query 71 GAATCGTTTTTGTGACAAAATCTGTTAAAAGAGTTTCATTATTT-TTGATGGAAGAGCTA 129 ||||||||||||||| ||||| |||| |||||||||||||||| |||||||||||| Sbjct 29 GAATCGTTTTTGTGAGAAAATATGTT--AAGAGTTTCATTATTTGAAAATGGAAGAGCTA 86 Query 130 AAGAGACTGGAGAAGTTTCAGACTGTTGTATCATCCATTACTTGTCACGGTTTAc--t-t 186 |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | | Sbjct 87 AAGAGACTGGAGAAGTTTCAGAGTGTTGTATCATCCGTTACTTGTCACGGTTTACTTTCT 146 Query 187 tcttcttcatcttccgattcagcttcttcttctcgcttcctctccaatctagtccttttc 246 ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 147 TCTTCTTCAACCTCCGATTCAGCTTCTTCTTCTCGCTTCCTCTCCAATCTCGTCCTTTTC 206 Query 247 cTGGTACAACCATGCGGCGAACTCGATTTAGATTCGAAACTGGGTCTACTCTCTGAGTTC 306 |||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| Sbjct 207 CTGGTACAACCATGCGGCGAACTCGATTCAGAATCGAAACTGGGTCTAGTCTCTGAGTTT 266 Query 307 TTACCGAAAATCTCAGGACCCTTCCTGGAAGAGATATCGAGATCACTTGAGCTAGACGAT 366 |||||||||||||||||||| || |||||| |||||||||| |||||||||| ||||||| Sbjct 267 TTACCGAAAATCTCAGGACCTTTTCTGGAAAAGATATCGAGGTCACTTGAGCAAGACGAT 326 Query 367 GAAGCTACTACACCACTTAACACAATTTCAGCAGAG--TGCCAAAATAGTTGTGTGAAGA 424 ||||||||||||||| |||||||||||||||||||| || | ||| ||||||||||||| Sbjct 327 GAAGCTACTACACCAGTTAACACAATTTCAGCAGAGTCTG-C-AAAGAGTTGTGTGAAGA 384 Query 425 GGAGTGTCATGGACAATGTTGATCCTTACATGTCACAGAAGCACCAAGAAGTTGTGGCAA 484 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 385 GGAGTGTCATGGACAATGTTGATCCTTTCATGTCACAGAAGCACCAAGAAGTTGTGGCAA 444 Query 485 TGGTCGGGCTAGATGCAATGAAGAGAGCAAACTCTACACTTGAGGATTTCTCCAGGTCTT 544 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 445 TGGTCGGGCTAGATGCAATGAAAAGAGCAAACTCTACACTTGAGGATTTCTCCAGGTCTT 504 Query 545 ATTTCATGTTTCATCGGTTGGATATTAACGAACCGCAATCAATATTCAGATATTTACCTG 604 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 505 ATTTCATGTTCCATCGGTTGGATATTAACGAACCGCAGTCAATATTCAGATATTTACCAG 564 Query 605 TGCTTTCATTCACAGAGAGTTACATATATCAGATGGATGCTCTTAATGAGAAGATAGTCA 664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 565 TGCTTTCATTCACAGAGAGTTACATATATCAGATGGATGCTCTTAATGAGAAGATAGTTA 624 Query 665 GTGAATCAGCTTGTGGATCCCAAGTCATTTATTCAAGTCATGGATGGAATGCTGAATCAC 724 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 625 GTGAATCAGCTCGTGGATCCCAAGTCATTTATTCAAGTCATGGATGGAATGCTGAATCAC 684 Query 725 GAGTTCTGTTTGAAACTAATCCGTTGAAGCCGCTTGGAGATCTGCTTGAACGTGAGGCCC 784 ||||| ||||||||||| |||| ||||||||||||||||||| |||||||||||||| || Sbjct 685 GAGTTTTGTTTGAAACTGATCCATTGAAGCCGCTTGGAGATCAGCTTGAACGTGAGGGCC 744 Query 785 TTTTGAC-AAACAGAGTACAACAAGAGTTTAATTCGGGTGAAGAGTATTGGGCGTTAGAA 843 |||| || || ||| |||||||||||||| | ||||||||||||||||||||||||||| Sbjct 745 TTTTAACTCAA-AGAATACAACAAGAGTTTCAGTCGGGTGAAGAGTATTGGGCGTTAGAA 803 Query 844 AGAAAGCTTTGTCATGCACTTTCAAACAAAAACAAGATCTGTCTCGAAGATGTGATGAGA 903 |||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||||||| Sbjct 804 AGAAAGCTATGTCATGCTCTTTCAAACAAAAATAAGCTCTGTCTCGAAGATGTGATGAGA 863 Query 904 GCAATTCATTTGAAGTCCTTTGATTACAGGGTGTTGAATCTTCTACTATACAAGTTGAGA 963 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 864 GCAATTCATTTGAAGTCTTTTGATTACAGGGTGTTGAATCTTCTACTATACAAGTTGAGA 923 Query 964 GGAGAAGAGGTGAATGAGTTGCATATGGACTTCTTGTCAATCTCAGAGTTTCTGGTTGAA 1023 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 924 GGAGAAGAGGTGAATGAGTTGCATATGGACTTCTTGTCAATTTCAGAGTTCCTGGTTGAA 983 Query 1024 GTAGCGGATGATCT 1037 |||||||||||||| Sbjct 984 GTAGCGGATGATCT 997 Score = 743 bits (402), Expect = 0.0 Identities = 473/506 (93%), Gaps = 9/506 (2%) Strand=Plus/Plus Query 1049 AGGATGATGTTCTTGAGAACAATTTCAATGTATTACGTATGTTTGTGGGAATATTCGGCT 1108 |||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 1042 AGGACGATGTTCTTGAGAACAGTTTCAATGTATTACGTATGTTTGTAGGAATATTCGGCC 1101 Query 1109 CATCGAATGCACCCACTGAACTGGCGAAGCGGATATCGGAAGCTGAAGAGAAGTATGAAG 1168 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1102 CATCAAATGCACCCACTGAACTGGCGAAGCGGATATCAGAAGCTGAAGAGAAGTATGAAG 1161 Query 1169 AGATTATGAAATCCCTGGATCCACATTTGTCTTCAAATTACCAAAGAAGATGTGAAGAAG 1228 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1162 AGATTATGAAATCTCTGGATCCACATTTGTCTTCAAATTACCAAAGAAGATGTGAAGAAG 1221 Query 1229 CTACTAAAGAAGGTGGGAAAATTTCTGGTCATTCGCTGGGAACATGGAACATACCGGCGG 1288 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1222 CTACTAAAGAAGGTGGGAAAATTTCTGGTCATTCGCTTGGAACATGGAACATACCGGCGG 1281 Query 1289 TTATCTCCGACGAAGAAGCATACCGATCTGCTCAACGGTAAA-CCGAGATTTAAGTCATG 1347 |||||||||||||||||||||||||| ||||| | |||| ||| |||||| || | | Sbjct 1282 TTATCTCCGACGAAGAAGCATACCGAGCTGCT-A----TAAAACCGTGATTTA-GTTAAG 1335 Query 1348 GTTATATACCGGATTAAACCGGGAtttttttATTGTATCCTTGACCGAGACATGAATAGA 1407 ||| ||||||||||||||||||||||||||| | |||||| || ||||||||||||||| Sbjct 1336 GTTGTATACCGGATTAAACCGGGATTTTTTT-T-GTATCCATGGCCGAGACATGAATAGG 1393 Query 1408 TGTAAGCTTGTGACCAAACATTCTTCGACCGTATAAAAGGAAAAAATAGTTTGAAGACTT 1467 ||||||||||||||||||||||||| |||||| | ||||||||||||| ||||||||||| Sbjct 1394 TGTAAGCTTGTGACCAAACATTCTTTGACCGTTTGAAAGGAAAAAATACTTTGAAGACTT 1453 Query 1468 TGTGACCTATGATGTATCAAAGGAGACAAAAGCCATTGACTCTTATAATTGGATCATGGA 1527 |||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| | Sbjct 1454 TGTGACCTATTATGTATCAAAGGAGACAAAAGCCATTGACTATTAGAATTGGATCATGCA 1513 Query 1528 ATAATAATTTCAGTTGTCTTACTGTG 1553 |||||||||||||||||||||||||| Sbjct 1514 ATAATAATTTCAGTTGTCTTACTGTG 1539 > Ahg947105 jgi|Araly1|947105|scaffold_703334.1 Length=248 Score = 196 bits (106), Expect = 3e-49 Identities = 135/148 (91%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 715 GCTGAATCACGAGTTCTGTTTGAAACTAATCCGTTGAAGCCGCTTGGAGATCTGCTTGAA 774 ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 58 GCTGAATCACGAGTTTTGTTTGACACTAACCCGTTGAAGCCGCTTGGAGATCTGCTTGAA 117 Query 775 CGTGAGGCCCTTTTG--AC-AA--A-CAGAGTACAACAAGAGTTTAATTCGGGTGAAGAG 828 ||||||| ||||||| || || | ||| |||||||||||||||| |||||||||||| Sbjct 118 CGTGAGGGCCTTTTGACACAAAGTATTAGAATACAACAAGAGTTTAAGTCGGGTGAAGAG 177 Query 829 TATTGGGCGTTAGAAAGAAAGCTTTGTC 856 |||||||||||||||||||||||||||| Sbjct 178 TATTGGGCGTTAGAAAGAAAGCTTTGTC 205 > Ahg891043 jgi|Araly1|891043|Al_scaffold_0007_3029 Length=399 Score = 110 bits (59), Expect = 4e-23 Identities = 74/81 (91%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 713 ATGCTGAATCACGAGTTCTGTTTGAAACTAATC-CGTTGAAGCCGCTTGGAGATCTGCTT 771 ||||||||||| ||||| ||||||| ||||| | ||||||| |||||||||||||||||| Sbjct 218 ATGCTGAATCATGAGTTTTGTTTGACACTAA-CTCGTTGAAACCGCTTGGAGATCTGCTT 276 Query 772 GAACGTGAGGCCCTTTTGACA 792 |||||||||| |||||||||| Sbjct 277 GAACGTGAGGGCCTTTTGACA 297 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58163804115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5