BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10330.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476319 jgi|Araly1|476319|fgenesh2_kg.2__1449__AT5G10330.1 2056 0.0
> Ahg476319 jgi|Araly1|476319|fgenesh2_kg.2__1449__AT5G10330.1
Length=1388
Score = 2056 bits (1113), Expect = 0.0
Identities = 1306/1398 (93%), Gaps = 18/1398 (1%)
Strand=Plus/Plus
Query 72 AGAAAAACCGAAGCTTTTGACTGATCTCAGTCACTTTAGTCTCCCTGCTCACGACCCTTC 131
||||||| |||||||||||||||||||| ||||||||||||||| | | |||||||||||
Sbjct 1 AGAAAAATCGAAGCTTTTGACTGATCTCCGTCACTTTAGTCTCCGT-C-CACGACCCTTC 58
Query 132 TCGTCTACTTAGGGTTATCTCCA-T--TTGCCCCTCTT-CCTGTCAACTTTCAGAC-ACG 186
|||| | ||||||||| ||| || | || || | || || || ||| | ||| |
Sbjct 59 TCGTTTCCTTAGGGTTTTCT-CACTGAATG-CCAT-TTGCC--TC-TCTTCCTGACAAAT 112
Query 187 A-AAACTGATGGGTGTGATCAATGTTCAGGGCTCTCCATCGTTCTCTATTCATTCTTCAG 245
| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 113 ACTGATTGATGGGTGTGATCAATGTCCAGGGCTCTCCATCGTTCTCTATTCATTCTTCAG 172
Query 246 AGTCAAATCTTCGAAAGTCTCGAGCTTTGAAGAAACCCTTTTGCTCAATCCGGAATAGGG 305
|| | ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 173 AGGCTAATCTTCGAAAGTCTCGAGCTTTGAGGAAACCCTTGTGCTCAATCCGGAATAGGG 232
Query 306 TTTATTGTGCTCAGTCTTCAAGTGCAGCTGTAGACGAATCCAAGAATATAACTATGGGAG 365
||||||||| |||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 233 TTTATTGTGTTCAGTCTTCAAGTGTAGCTGTAGACGAATCCAAGAACATAACCATGGGAG 292
Query 366 ACTCTTTTATCCGTCCACATTTGAGACAATTGGCTGCTTATCAGCCAATTTTACCCTTTG 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 ACTCTTTTATCCGTCCACATTTGAGACAATTGGCTGCTTATCAGCCAATTTTACCCTTTG 352
Query 426 AGGTATTGTCTGCTCAATTAGGAAGAAAGCCTGAGGATATTGTCAAGTTAGATGCTAATG 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AGGTATTGTCTGCTCAATTAGGAAGAAAGCCTGAGGATATTGTCAAGTTAGATGCTAATG 412
Query 486 AGAACCCATATGGTCCTCCTCCAGAGGTTTTTGAAGCATTAGGCAATATGAAATTCCCTT 545
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 413 AGAACCCATATGGTCCTCCTCCAGAGGTTTTTGAAGCATTAGGCAATATCAAATTCCCTT 472
Query 546 ACGTTTATCCTGATCCACAAAGTCGTAGACTTCGTGATGCACTGGCTCAAGACTCTGGT- 604
|||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 473 ACGTTTATCCTGATCCACAAAGCCGTAGACTTCGTGATGCCCTCACTCTAGACTCTGGTC 532
Query 605 TTGGAGTCTGAATACATACTTGTAGGCTGTGGTGCTGACGAACTTATTGATTTGATCATG 664
||| ||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 533 TTG-AGTCTGAATACATTCTTGTAGGCTGTGGCGCTGACGAACTGATTGACTTGATCATG 591
Query 665 AGATGCGTGTTAGATCCTGGGGAGAAGATTATAGATTGTCCTCCAACTTTCTCAATGTAT 724
||||||||||| ||||||||||||||||| ||||| || ||||| |||||||||||||||
Sbjct 592 AGATGCGTGTTGGATCCTGGGGAGAAGATCATAGACTGCCCTCCGACTTTCTCAATGTAT 651
Query 725 GTGTTTGATGCGGCTGTGAATGGAGCAGGTGTCATTAAAGTTCCAAGAAACCCCGATTTC 784
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 652 GTGTTTGATGCGGCTGTGAATGGAGCAGGTGTCATTAAAGTTCCAAGGAACCCTGATTTC 711
Query 785 AGCTTGAATGTAGACCGCATCGCTGAAGTTGTAGAACTAGAAAAACCCAAATGCATATTC 844
||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 712 AGCTTGAATGTTGACCGCATCGCTAAAGTTGTAGAACTAGAAAAACCCAAATGTATATTC 771
Query 845 CTAACTTCTCCCAACAATCCAGATGGGAGTATCATCAGCGAGGACGATCTGTTGAAGATT 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CTAACTTCTCCCAACAATCCAGATGGGAGTATCATCAGCGAGGACGATCTGTTGAAGATT 831
Query 905 CTAGAA-ATGCCAATACTTGTTGTTCTAGATGAAGCTTACATCGAATTCTCAGGAGTTGA 963
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CTA-AAGATGCCAATACTTGTTGTTCTAGATGAAGCTTACATCGAATTCTCAGGAGTTGA 890
Query 964 ATCACGCATGAAATGGGTGAAGAAGTATGAAAACCTTATCGTTCTCCGCACATTTAGCAA 1023
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 891 ATCAAGGATGAAATGGGTGAAGAAGTATGAAAACCTTATCGTTCTCCGCACATTTAGTAA 950
Query 1024 ACGAGCTGGTTTAGCCGGGCTTCGAGTTGGATATGGAGCGTTTCCGTTGAGTATAATCGA 1083
||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 951 ACGAGCTGGTTTAGCTGGACTTCGAGTTGGATATGGAGCGTTTCCATTGAGCATAATCGA 1010
Query 1084 ATACCTGTGGAGAGCAAAGCAACCGTACAATGTCTCTGTTGCAGGGGAAGTAGCTGCTTT 1143
||||||||||||||||| || || || |||||||||||||| |||||||||||||||||
Sbjct 1011 GTACCTGTGGAGAGCAAAACAGCCATATAATGTCTCTGTTGCCGGGGAAGTAGCTGCTTT 1070
Query 1144 AGCAGCACTCTCAAACGGGAAATACTTGGAAGATGTGAGAGACGCCTTGGTACGGGAAAG 1203
||||||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||
Sbjct 1071 AGCAGCACTTTCAAATGGAAAATACTTGGAAGATGTGAGAGACGCGTTGGTACGAGAAAG 1130
Query 1204 AGAGAGACTGTTCGGGCTATTAAAAGAAGTTCCTTTCTTGAATCCATATCCGAGCTATTC 1263
||||||||| |||||||| |||||||||||||||||||||||||| || |||||| ||||
Sbjct 1131 AGAGAGACTTTTCGGGCTTTTAAAAGAAGTTCCTTTCTTGAATCCTTACCCGAGCCATTC 1190
Query 1264 GAATTTCATTCTCTGTGAGGTTACATCTGGAATGGATGCAAAGAAGCTGAAAGAGGATTT 1323
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1191 GAATTTCATTCTCTGTGAGGTTACATCTGGAATGGACGCCAAGAAGCTGAAAGAGGATTT 1250
Query 1324 GGCGAAAATGGGTGTGATGGTTCGTCATTACAACAGTCAAGAGCTTAAAGGTTATGTTCG 1383
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1251 GGCGAAAATGGGTGTGATGGTTCGTCATTACAACAGTCAAGAGCTTAAGGGTTATGTTCG 1310
Query 1384 AGTTTCTGCTGGAAAGCCTGAACATACTGATGTTCTCATGGAGTGTCTTAAGCAATTTTA 1443
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1311 AGTTTCTGCTGGAAAGCCTGAACACACTGATGTTCTTATGGAGTGTCTTAAGCAATTTTA 1370
Query 1444 TTGACTTCCCCATTTGTT 1461
|||| |||||||||||||
Sbjct 1371 TTGATTTCCCCATTTGTT 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5