BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10340.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487863 jgi|Araly1|487863|fgenesh2_kg.6__997__AT5G10340.1 1598 0.0
Ahg901256 jgi|Araly1|901256|Al_scaffold_0004_1906 233 2e-60
> Ahg487863 jgi|Araly1|487863|fgenesh2_kg.6__997__AT5G10340.1
Length=1137
Score = 1598 bits (865), Expect = 0.0
Identities = 1058/1150 (92%), Gaps = 17/1150 (1%)
Strand=Plus/Plus
Query 193 ATGGAAGAATTGTTACCACACGATGTGATAGAGTATCATATAATGGTGAGGCTTGATGTG 252
|||||||| |||||||| |||||||||||||||| |||||| ||| ||||||||||||
Sbjct 1 ATGGAAGAGTTGTTACCGCACGATGTGATAGAGTTTCATATTCTGGAGAGGCTTGATGTA 60
Query 253 AAAACCCTCCTCAAGTTCAAGTCTGTATCGAAGCAATGGATGTCTACAATCCAATCCCCT 312
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 61 AAAACCCTCCTCAAGTTCAAGTCTGTATCTAAGCAATGGATATCTACTATCCAATCCCCT 120
Query 313 AGTTTCCAAGAAAGACAGTTGATCCACCATCTTAGCCAATCATCAGGAGATCCACATGTG 372
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TGTTTCCAAGAACGACAGTTGATCCACCATCTTAGCCAATCACCAGGAGATCCACATGTG 180
Query 373 CTTTTGGTGTCCTTATATGATCCTTGTGCTCGTCAACAAGATCCAAGCATAAGCAGCTTT 432
|||||||||||||||| |||||||| |||||||||||||||| | | | ||||||
Sbjct 181 CTTTTGGTGTCCTTATCTGATCCTTCTGCTCGTCAACAAGAT-C---C---A--AGCTTT 231
Query 433 GAAGCTCTGAGAACTTTTTTGGTGGAGTCATC-TGCAGCTTCTGTTCAGATCCCTACTCC 491
|||||||||||||| || ||||| |||||| | |||||||||||||||||||||||||
Sbjct 232 GAAGCTCTGAGAACGTTGGAGGTGGGGTCATCAT-CAGCTTCTGTTCAGATCCCTACTCC 290
Query 492 TTGGGAGGACAAGTTGTACTTCGTTTGCAATACTAGCTGTGATGGTCTGATATGCCTCTT 551
||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct 291 TTGGGAGGACAAGTTATACGACGTTTGCAATACTAGCTGTGATGGTTTGATATGCCTC-- 348
Query 552 TA-G-TTTCTATGAACTGCCGAGTATTGTCGTCAATCCCACCACTCGATGGCATCGAACT 609
|| | |||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 349 TACGATTTCTATGCTTTGCCCAGTATTGTCGTCAATCCTACCACTCGATGGCATCGAACT 408
Query 610 TTCCCTAAATGCAACTATCAACTAGTCGCTGCCGACAAGGGTGAGAGACACGAGTGCTTT 669
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 409 TTCCCTCAATGCAACTATCAACTAGTCGCTGCCGACAAGGGTGAGAGAGACGAGTGCTTT 468
Query 670 AAAGTCGCATGCCCTACTCCTGGATTTGGCAAAGACAAAATCAGTGGCACTTACAAGCCA 729
||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 469 GAAGTCCCATACCCTACTCCTGGATTTGGCAAAGACAAAATCAGCGGCACATACAAGCCA 528
Query 730 GTTTGGTTATATAATTCCGCTGAGTTAGACCTAAATGACAAGCCTACTACTTGTGAAGTT 789
|||||||| |||||||| |||||||||| |||||| |||||| |||||||||||||||||
Sbjct 529 GTTTGGTTGTATAATTCAGCTGAGTTAGGCCTAAACGACAAGGCTACTACTTGTGAAGTT 588
Query 790 TTCGATTTTGCCACCAACGCTTGGAGGTACGTTTTCCCCGCGTCCCCTCATCTGATTCTT 849
|| ||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||||
Sbjct 589 TTTGATTTTGCCACCAACGCTTGGAGATACATTTTCCCTGCTTCCCCTCATCTGATTCTT 648
Query 850 CACACCCAAGATCCTGTTTATGTAGACGGGTCACTTCACTGGTTCACTGCCTTGTCACAC 909
||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 649 CACACCCAATATCCTGTTTATGTAGATGGGTCACTTCATTGGTTCACTGCCTTGTCACAC 708
Query 910 GAGGGCGAAACCATGGTTTTGTCTTTGGATCTTCACTCCGAAACGTTCCAAGTCATCTCT 969
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 709 GAGGGCGAAACCATGGTTTTGTCTTTGGATCTTCACTCCGAAATTTTCCAAGTCATCTCT 768
Query 970 AAAGCTCCCTTTCTCAATGTCTCTGATGAATATTATATCGTCATGTGCAACCTCGGTGAT 1029
||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||
Sbjct 769 AAAGCTCCCTTTCTCAATGTCTCTGATGAATATAAGATCGTCATGTGCAACCTTGATGAT 828
Query 1030 CGTTTGTGCGTATCCGAGCAAAAGTGGCCCAACCAAGTCATATGGTCGTTGGATGATTCA 1089
||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 829 CGTTTGTGCGTGTCCGAGGAAAAGTGGCCCAACCAAGTCATCTGGTCGTTGGATGATTCA 888
Query 1090 GACCACAAGACATGGAAGCAAATATATTCCATAGACCTCATTATCACCTCTTCTTTGTTC 1149
||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 889 GACCACAAGACATGGAAGCAAATATATTCCATAGATCTCAATATCACTTCTTCTTTGTTC 948
Query 1150 TTTAGTGCCATATTCGCATTCACCCCACTAGCAGTTTTGGACAAGGACAAGTTATTGTTT 1209
| | ||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 949 GGGATTACCAGATTCGCATTCACACCACTAGCAGTTTTGGACAAGGACAAGTTATTGTTT 1008
Query 1210 TATGATAGT-ACACACGGGGATGCATTCCTAACACATGATCCAGATACCAAATCTTATGA 1268
|||||| || | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TATGATCGTGA-ACACGGCAATGCATTCCTAACACATGATCCAGATACCAAATCTTATGA 1067
Query 1269 TTTGCCTTACACATCTAATCGCTGTGCAACTGTTGTTTGTTATTTCCCGAGTTTAATTTC 1328
|||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 1068 TTTGCCTTACACATCTAAACGCTGGGCAAGAGTTGTTTGTTATTTCCCGAGTTTAATTTC 1127
Query 1329 TATTTTGTAG 1338
||||||||||
Sbjct 1128 TATTTTGTAG 1137
> Ahg901256 jgi|Araly1|901256|Al_scaffold_0004_1906
Length=1080
Score = 233 bits (126), Expect = 2e-60
Identities = 584/788 (74%), Gaps = 100/788 (13%)
Strand=Plus/Plus
Query 229 CATATAATGGTGAGGCTTGATGTGAAAACCCTCCTCAAGTTCAAG-TCTGTATCGAAGCA 287
||||| ||| ||| ||||||||||||||| | |||||||||||| || |||||||||||
Sbjct 31 CATATTCTGGAGAGACTTGATGTGAAAACCTTGCTCAAGTTCAAGTTC-GTATCGAAGCA 89
Query 288 ATGGATGTCTACAATCCAATCCCCTAG-TTTCCAAGAAAGACAGTTGATCCACCATCTTA 346
||||| ||||||||||||| || | | ||||||||||||||| |||| |||| ||
Sbjct 90 ATGGAAATCTACAATCCAATGCCGT-GCTTTCCAAGAAAGACAACTGAT---GCATCGTA 145
Query 347 GCCAATCATCAGG-AGATCCACATGTGCTTTTGGTGTCCTTATATGATCCTTGTGCTCGT 405
| | | |||||| | ||||| |||| |||||||| ||| ||| ||| || || |
Sbjct 146 GGC-A--ATCAGGTA-ATCCAGATGTCCTTTTGGTATCCGTATGTGA----TG-AATC-T 195
Query 406 CAACAAGATCCAAGCATA-AGCAGCTTTGAAGCTCTGAGAACTTTTTTGGTGGAGTCATC 464
| | || | || || ||| |||||||| ||||||| || | |||| ||||
Sbjct 196 TATC-TTAT---TG-GTACAG-AGC-TTGAAGCTATGAGAACGTTGGTAGTGGGGTCA-- 246
Query 465 TGCAGCTTCTGTTCA-GATCCCTACTCCTTGGGAGGACAA-GTTGTACTTCGTTTGCAAT 522
| ||| ||| ||| | ||||| |||||||||||| | || |||||| |||||| |
Sbjct 247 T-CAGTTTCGGTT-AGGATCCTTACTCCTTGGGA-AAAAACCTTGTACAAAGTTTGCCAG 303
Query 523 ACTAGCTGTGATGGTCTGATATGCCTCTTTAGTTTCTATGAACTGCCGAGTATTGTCGTC 582
| ||||||||| || ||||||||||||| | | |||| || || |||||| ||
Sbjct 304 AGTAGCTGTGACGGCCTGATATGCCTCTACAATGACTAT--CCT-AAGAATATTGTTGTT 360
Query 583 AATCCCACCACTCGATGGCATCGAACTTTCCCTAAATGCAAC-TATCAACTAGTCGCTGC 641
||||||||||||||||||||||||||||||||| | | || ||||||| | || ||
Sbjct 361 AATCCCACCACTCGATGGCATCGAACTTTCCCTCGTT-CTACCTATCAACGACTCACTA- 418
Query 642 CGACAAGGGTGAGAGACACGAGTGCTTTAAAGTCGCATGCCCTACTCCTGGATTTGGCAA 701
| || || || | || | | ||| || | | | | ||||| || ||
Sbjct 419 -GTCATGGA-GA-AT-CATG-G-GCT--AA-G-C---T----T------GGATTCGGTAA 455
Query 702 AGACAAAATCAGTGGCACTTACAAGCCAGTTTGGTTATATAATTCCGCTGAGTTAGAC-- 759
||||||||||| |||||| |||||||||||||||||||| ||||| ||||| |||| |
Sbjct 456 AGACAAAATCAATGGCACATACAAGCCAGTTTGGTTATACAATTCTGCTGAATTAGGCGG 515
Query 760 C-T-AA--ATGACAA-G-C--CTAC-----TA---CT-T--GTGAAGTTTTCGATTTTGC 800
| | || ||||| | | | | || || || | |||||||||| |||||| |
Sbjct 516 CCTTAACGATGACGACGACAACAACAACACTAGTACTATTTGTGAAGTTTTTGATTTTAC 575
Query 801 CACCAACGCTTGGAGGTACGTTTTCCCCGCGTCCCC-TCATCTGATTCTTCAC--ACCCA 857
| |||| ||||||||||| ||| ||||||||||||| | | | ||| |||| | ||| |
Sbjct 576 CTCCAAGGCTTGGAGGTATGTTGTCCCCGCGTCCCCCT-ACCCGATACTTC-CTTACC-A 632
Query 858 AGATCCTGTTTATGTAGACGGGTCACTTCACTGGTTCACTGCCTTGTCACACGAGGGCGA 917
||||||||| |||||||| ||||||||||| ||| ||||||| || | || | | |
Sbjct 633 AGATCCTGTATATGTAGATGGGTCACTTCATTGGCTCACTGCGG-GTGAAACCAC--C-A 688
Query 918 AACCATGGTTTTGTCTTTGGATCTTCACT-CCGAAACGTTCCAAGTCATCTCTAAAGCTC 976
| || |||||||||| |||||||| | ||||||| ||||||||||| ||||||||||
Sbjct 689 A----TG-TTTTGTCTTTTGATCTTCA-TACCGAAACTTTCCAAGTCATGTCTAAAGCTC 742
Query 977 CCTTTCTC 984
||||||||
Sbjct 743 CCTTTCTC 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5