BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10350.1
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487865 jgi|Araly1|487865|fgenesh2_kg.6__999__AT5G10350.2 1040 0.0
> Ahg487865 jgi|Araly1|487865|fgenesh2_kg.6__999__AT5G10350.2
Length=966
Score = 1040 bits (563), Expect = 0.0
Identities = 595/611 (97%), Gaps = 0/611 (0%)
Strand=Plus/Plus
Query 59 AAAATGGAGGAAGAAGAGCACGAGGTTTACGGTGGAGAAATCCCTGAAGTCGGCGATACG 118
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 1 AAAATGGAGGAAGAAGAGCACGAGGTTTACGGCGGAGAAATCCCTGAAGTCGACGAGACG 60
Query 119 GATGTTCCCGATCCGGATATCGATATGTCTGCAGCCGATGAGGACGCCGTTACGGAGCTT 178
|||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 61 GATGTTCCCGATCCGGATATCGATATGTCTGCCGGCGATGATGACGCCGTTACGGAGCTT 120
Query 179 GCTGAGATGAAGAGGAGATTAAAGGAGATGGAGGAAGAAGCTGCTGCGCTACGAGAGATG 238
||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GCTGAGATGAAGAAGAGATTGAAGGAGATGGAGGAAGAAGCTGCTGCGCTACGCGAGATG 180
Query 239 CAAGCAAAAGTCGAAAAAGAAATGGGAGCTACTCAAGATCCTGCTAGTATGGCTGCAAAT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAGCAAAAGTCGAAAAAGAAATGGGAGCTACTCAAGATCCTGCTAGTATGGCTGCAAAT 240
Query 299 CAAGAAGGAAAGGAGGAGGTGGATGCTCGATCAGTTTATGTTGGCAATGTCGACTATGCC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CAAGAAGGAAAGGAGGAGGTGGATGCTCGATCAGTTTATGTTGGCAATGTCGATTATGCC 300
Query 359 TGTACACCTGAAGAAGTGCAACTACATTTCCAAACATGCGGAACAGTCAACCGGGTAACC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 TGTACACCTGAAGAAGTGCAACTACATTTCCAAACATGCGGAACAGTCAACCGTGTAACC 360
Query 419 ATTCTAATGGACAAGTTTGGACAGCCAAAGGGATTTGCTTATGTGGAGTTTGTAGAAGTG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTCTAATGGACAAGTTTGGACAGCCAAAGGGATTTGCTTATGTGGAGTTTGTAGAAGTC 420
Query 479 GAAGCCGTGCAAGAAGCTCTGCAGCTGAATGAATCAGAGCTTCATGGTCGTCAACTGAAG 538
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 421 GAAGCTGTGCAAGAAGCTCTGCAACTGAATGAATCAGAGCTACATGGTCGTCAACTGAAG 480
Query 539 GTCTCGCCTAAGCGAACCAATGTTCCTGGAATGAAACAGTATCATCCTGGGCGTTTCAAC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTCTCGCCTAAGCGAACCAATGTTCCTGGAATGAAACAGTATCATCCTGGGCGTTTCAAC 540
Query 599 CCTTCAATGGGATACCGCTTTCGCAGACCCTTTGTGCCTCCGTATTTTTATTCCCCATAT 658
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 CCTTCAATGGGATACCGCTTTCGCAGACCCTTTGTGCCTCCTTATTTTTATTCCCCATAT 600
Query 659 GGATACGGGAA 669
|||||||||||
Sbjct 601 GGATACGGGAA 611
Score = 267 bits (144), Expect = 1e-70
Identities = 257/305 (84%), Gaps = 34/305 (11%)
Strand=Plus/Plus
Query 666 GGAAGGCTCCTAGGTTCAGAAGGCCAATGCGGTACATGCCTTACCAATAGAAACCGTACC 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GGAAGGCTCCTAGGTTCAGAAGGCCAATGCGGTACATGCCTTACCAATAGAAACCGTACC 735
Query 726 G---GAATAAGAAG-AACTATGACAGAGATGATGCC--GAG----G---TCGTCCCTCCA 772
||||||||| ||||||||||||||||||||| ||| | |||||||| |
Sbjct 736 ACTAGAATAAGAACCAACTATGACAGAGATGATGCCTAGAGAATAGAGGTCGTCCCTATA 795
Query 773 TTTCGAGCTTTATAT-ATGAATATGACTTTGC-TC-----GCACCTGAACTTAATTTTGA 825
|||| |||||||| | |||||||||| ||||| | ||||||||||||| ||||||
Sbjct 796 TTTCCAGCTTTAT-TGATGAATATGATTTTGCCTTTTTATGCACCTGAACTTACTTTTGA 854
Query 826 ATCTGTCATGTACGGATGAGATTATAAGCTTTTGTTTCTTTAGATTATGATTATATTTGG 885
||| |||||||||||||||||||||||||||||||||| ||| | | | ||
Sbjct 855 ATCGGTCATGTACGGATGAGATTATAAGCTTTTGTTTCCTTA--T---G-T-------GG 901
Query 886 TCGATATTACTTTCAGTTTATATCTTTGTTAGTACTTTCTTTCATCCAAAGGGGGCTAAA 945
||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct 902 TCGATATTACTTTCAGTTTATATCTTTGTTATTGCTTTCTTTCATCCAAAGCTGGCTAAA 961
Query 946 TAAGT 950
|||||
Sbjct 962 TAAGT 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35454312810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5