BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10360.1
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487866 jgi|Araly1|487866|fgenesh2_kg.6__1000__AT5G10360.1 1602 0.0
Ahg915134 jgi|Araly1|915134|Al_scaffold_0009_103 1181 0.0
> Ahg487866 jgi|Araly1|487866|fgenesh2_kg.6__1000__AT5G10360.1
Length=987
Score = 1602 bits (867), Expect = 0.0
Identities = 949/989 (96%), Gaps = 4/989 (0%)
Strand=Plus/Plus
Query 14 AGCTGAGCCGCGTCGAGAGCATTTTATATCTTCAATCATCT-TACGCAGGCTGTTGTAGC 72
|||| ||||||| |||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 1 AGCTAAGCCGCGCCGAGAGCATTTTATATCTTCAATCTTCTGT-CGCAGGCTGTTGTAGC 59
Query 73 AGCAGTGTCTATCGGAGACGATGAAGTTCAACGTCGCCAATCCGACCACCGGGTGTCAAA 132
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 60 AGCAGTGTCTATCGGAGACGATGAAGTTCAACATCGCCAACCCGACCACCGGGTGCCAAA 119
Query 133 AGAAACTCGAGATCGATGACGATCAAAAACTCCGCGCCTTTTTCGACAAGAGGCTCTCTC 192
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 120 AGAAGCTCGAGATCGATGACGACCAAAAACTCCGTGCCTTTTTCGACAAGAGGCTCTCTC 179
Query 193 AGGAAGTTAGCGGAGATGCTCTAGGCGAGGAATTCAAGGGATACGTATTCAAGATCATGG 252
|||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct 180 AGGAAGTTAGCGGAGATGCTTTGGGCGAGGAATTCAAGGGTTACGTATTCAAGATCATGG 239
Query 253 GAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCC 312
|||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 240 GAGGTTGTGACAAGCAAGGTTTCCCAATGAAACAGGGAGTTCTGACTCCTGGGCGTGTCC 299
Query 313 GTCTTTTGCTTCACCGAGGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGA 372
| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 GCCTTTTGCTTCACAGAGGTACTCCTTGTTTCAGAGGACACGGAAGGAGGACTGGAGAGA 359
Query 373 GGAGACGAAAGTCTGTCCGTGGTTGCATTGTGAGCCCTGACCTGTCTGTTCTTAACTTGG 432
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 360 GGAGACGAAAGTCTGTTCGTGGTTGCATTGTGAGCCCTGACCTCTCTGTCCTTAACTTGG 419
Query 433 TCATTGTGAAGAAGGGTGTA-AGTGATCTTCCCGGGCTTACCGACACTGAGAAGCCAAGA 491
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCATTGTGAAGAAGGGTG-AGAGTGATCTTCCCGGGCTTACCGACACTGAGAAGCCAAGA 478
Query 492 ATGAGAGGTCCCAAGAGGGCATCAAAGATCCGCAAGTTGTTTAACCTTGGAAAAGAGGAT 551
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 ATGAGAGGTCCCAAGAGGGCATCAAAGATCCGCAAGTTGTTTAACCTTGGAAAGGAGGAT 538
Query 552 GATGTGAGGAAGTACGTTAACACTTACCGCCGTACCTTCACAAACAAGAAGGGCAAGAAG 611
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GATGTGAGGAAGTATGTCAACACTTACCGCCGTACCTTCACAAACAAGAAGGGCAAGAAG 598
Query 612 GTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTGACTCCATTGACCCTCCAGAGGAAGAGA 671
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 599 GTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTGACTCCATTGACTCTCCAGAGGAAGAGA 658
Query 672 GCTAGAATTGCTGACAAGAAGAAGAGAATCGCCAAGGCTAACTCTGATGCAGCTGATTAC 731
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 659 GCTAGAATTGCTGACAAGAAGAAGAGAATCGCCAAGGCTAACTCTGATGCAGCCGAGTAC 718
Query 732 CAGAAGCTTCTTGCCTCCAGACTAAAGGAGCAGCGTGATCGCCGTAGTGAAAGTTTGGCC 791
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 719 CAGAAGCTTCTTGCCTCCAGACTTAAGGAGCAGCGTGATCGCCGTAGTGAAAGTTTGGCC 778
Query 792 AAGAAGAGGTCTAGACTCTCTTCTGCTCCTGCTAAACCCGTTGCTGCTTAAACTGCCTCA 851
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 779 AAGAAGAGGTCTAGACTCTCTTCTGCTCCTGCCAAACCCGTTGCTGCTTAAACTGCCCCA 838
Query 852 AGATTAAGAAATTTCTTTCTCTCTAGTTTGTTTCTGGTCGTATTTAAGTTGCTCCACAGA 911
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGATTAAGAGATTTCTTTCTCTCTAGTTTGTTTCTGGTCGTATTTAAGTTGCTCCACAGA 898
Query 912 CATGAGAACGCCATTTTGAACACTATTTTTGGTTTCTGTTTTGTGTCAACTTTTCAAGCC 971
||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 899 CATGATAACGCCATTTTGAATGCTATTTTTGGTTTCTGCTTTGTGTCAACTTTTCAAGCC 958
Query 972 TTTTATTATATCAAAGTTTTGAACCTCTT 1000
|||||||||||||||||||||||||||||
Sbjct 959 TTTTATTATATCAAAGTTTTGAACCTCTT 987
> Ahg915134 jgi|Araly1|915134|Al_scaffold_0009_103
Length=750
Score = 1181 bits (639), Expect = 0.0
Identities = 715/752 (95%), Gaps = 4/752 (1%)
Strand=Plus/Plus
Query 93 ATGAAGTTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAACTCGAGATCGATGAC 152
|||||||||||| ||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 1 ATGAAGTTCAACATCGCCAACCCGACCACCGGGTGCCAAAAGAAGCTCGAGATCGATGAC 60
Query 153 GATCAAAAACTCCGCGCCTTTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCT 212
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACCAAAAACTCCGTGCTTTTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCT 120
Query 213 CTAGGCGAGGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT 272
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TTGGGCGAGGAATTCAAGGGATACGTATTCAAGATCATGGGAGGTTGTGACAAGCAAGGT 180
Query 273 TTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGGT 332
|||||||||||||| |||||||| ||||| ||||||||||| || ||||||||| |||||
Sbjct 181 TTCCCAATGAAACAGGGAGTTCTGACTCCTGGGCGTGTCCGCCTCTTGCTTCACAGAGGT 240
Query 333 ACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAAAGTCTGTCCGT 392
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 ACTCCTTGTTTCAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAAAGTCTGTTCGT 300
Query 393 GGTTGCATTGTGAGCCCTGACCTGTCTGTTCTTAACTTGGTCATTGTGAAGAAGGGTGTA 452
||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| |
Sbjct 301 GGTTGCATTGTCAGCCCTGACCTCTCTGTCCTTAACTTGGTTATTGTGAAGAAGGGTGAA 360
Query 453 AGTGATCTTCCCGGGCTTACCGACACTGAGAAGCCAAGAATGAGAGGTCCCAAGAGGGCA 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTGATCTTCCCGGGCTTACCGACACTGAGAAGCCAAGAATGAGAGGTCCCAAGAGGGCA 420
Query 513 TCAAAGATCCGCAAGTTGTTTAACCTTGGAAAAGAGGATGATGTGAGGAAGTACGTTAAC 572
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 421 TCAAAGATCCGCAAGTTGTTTAACCTTGGAAAGGAGGATGATGTCAGGAAGTACGTCAAC 480
Query 573 ACTTACCGCCGTACCTTCACAAACAAGAAGGGCAAGAAGGTTAGCAAGGCTCCTAAGATC 632
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACCTACCGCCGTACCTTCACAAACAAGAAGGGCAAGAAGGTTAGCAAGGCTCCTAAGATC 540
Query 633 CAGAGGCTTGTGACTCCATTGACCCTCCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAG 692
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 CAGAGGCTTGTCACTCCATTGACTCTCCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAG 600
Query 693 AAGAGAATCGCCAAGGCTAACTCTGATGCAGCTGATTACCAGAAGCTTCTTGCCTCCAGA 752
|||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 601 AAGAAAATCGCCAAGGCTAACTCTGATGCAGCTGAGTACCAGAAACTTCTTGCCTCCAGA 660
Query 753 CT-AAAGGAGCAGCGTGATCGCCGTAGTGAAAGTTTGGCCAAGAAGAGGTCTAGACTCTC 811
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTAAAG-AGCAGCGTGATCGCCGTAGTGAAAGTTTGGCCAAGAAGAGGTCTAGACTCTC 719
Query 812 TTCTGCTCCT-GCTAAACCCGTTGCTGCTTAA 842
|||||||| | || ||||||||||||||||||
Sbjct 720 TTCTGCTC-TAGCCAAACCCGTTGCTGCTTAA 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41058381609
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5