BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10380.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350245 jgi|Araly1|350245|fgenesh1_pg.C_scaffold_6000838 1085 0.0
> Ahg350245 jgi|Araly1|350245|fgenesh1_pg.C_scaffold_6000838
Length=921
Score = 1085 bits (587), Expect = 0.0
Identities = 753/834 (90%), Gaps = 8/834 (1%)
Strand=Plus/Plus
Query 263 CCC-CCGCCACCACCACCACCGCCACCGAGGGAGCTCTCTCTCCTACTCCCCACCTCGAT 321
||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 90 CCCTCCGCCACCACCACCACCGCCACAGAGCAAGCTCTCTCTCCTACTCCCCACCTATAT 149
Query 322 CTGCGTCGTCGGCTCAATCATACTCTTTCTATTTCTAGTCTTCTTCCTCTACCTCCACAT 381
|||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| ||||
Sbjct 150 CTGCGTCGTCGGCTCAGTCATACTCTTTCTCTTTCTAGTCGTCTTCCTCTACCTCTACAT 209
Query 382 CACGCAACAACGGCGGATTTCAGCCGCCAGCGTAACTCCCGGTGACACAAACCAACAGGA 441
||||||| |||||||| |||||||| | |||||||||||||||||||| ||||| |||
Sbjct 210 AACGCAACCACGGCGGAACTCAGCCGCTACCGTAACTCCCGGTGACACAAGCCAACGGGA 269
Query 442 AGATGAGGACGAAACAGAGGAGAGAGATTTCTCCGACTTTCATCACGTTTGGCAAATCCC 501
| | || ||||||||||||||||||||| ||||||||| |||||||| |||| ||||||
Sbjct 270 AAACGAAGACGAAACAGAGGAGAGAGATCACTCCGACTTCCATCACGTCTGGCGAATCCC 329
Query 502 AACCGTCGGTCTCCACCGTTCCGCGATCAACTCGATCACAGTCGTTGGATTCAAAAAGGG 561
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 330 AACCGTCGGTCTCCATCGTTCCGCCATCAACTCGATCACAGTTGTTGGATTCAAAAAGGG 389
Query 562 AGAAGGGATAATCGACGGCACAGAATGCTCTGTCTGCTTAAACGAGTTTGAAGAAGACGA 621
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 AGAAGGGATCATCGACGGCACAGAATGCTCTGTCTGCTTAAACGAGTTTGAAGAAGACGA 449
Query 622 GTCGCTGAGACTGTTACCAAAGTGTAGCCATGCCTTTCATC-TAAATTGCATCGACACTT 680
|| |||||| |||||||||||||||| || |||||||| | | || ||||| |||||||
Sbjct 450 ATCACTGAGATTGTTACCAAAGTGTAGTCACGCCTTTCA-CATTAACTGCATTGACACTT 508
Query 681 GGTTGCTCTCTCACAAGAACTGTCCTTTATGTCGTGCCCCTGTACTTCTTATCACTGAAC 740
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 509 GGTTGCTCTCTCACAAGAACTGTCCTTTATGTCGTGCCCCTGTTCTTCTTCTCACTGAGC 568
Query 741 CACCTCATCAAGAAACAGAGACGAATCATCAACCAGATTCTGAATCGAGCAATGACCTCC 800
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CTCCTCATCAAGAAACAGAGACGAATCATCAACCAGATTCTGAATCGAGCAATGACCTCA 628
Query 801 GTGGA--AG-ACAAGACAGTTCCAGATCTAGAAGAAACCATAACATTTTTCTTCCAAGGG 857
||||| || |||||| ||||| ||||| |||||||||||||| ||| ||||||||||||
Sbjct 629 GTGGAGGAGGACAAGAGAGTTCTAGATCCAGAAGAAACCATAATATTATTCTTCCAAGGG 688
Query 858 CACAAAGTGATTTGGCAAACTACTGTGGCTCAGGAAGAGTAGAAAACGTGAGAAGATCGT 917
||||||| |||||||||||| | |||||||| |||||||| ||||| |||||||||||||
Sbjct 689 CACAAAGCGATTTGGCAAACCATTGTGGCTCGGGAAGAGTGGAAAATGTGAGAAGATCGT 748
Query 918 TTTCAATTGGAGGAAGCTTATCACTTTGCGATGGTA-TTAACAATGCTACTAGAAGTGGA 976
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 749 CATCAATTGGAGGAAGCTTATCACTTTGCGATGGTAATTA-CAATGCTACTAGAAGTGGA 807
Query 977 AGACAGTTCTATACCAGCTTCAGTGCTAACTTGTTCTCATCATCAAGAAGAGTAAGGAAC 1036
||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| |
Sbjct 808 AGACAGTTCTATACCAGTTTCAGTGCTAACTTCTTCTCATCATCAAGAAGATTAAGGAGC 867
Query 1037 GAACAACCGATTCCACAAAACCAAATGCCATCCGTAACTGGTAACACCAGTTAA 1090
|| | ||||||| || ||||| | ||||| ||| ||||||| |||||||
Sbjct 868 CAAGATCCGATTCTACCAAACCGTACACCATCTGTATCTGGTAATTTCAGTTAA 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5