BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10390.1
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940507 jgi|Araly1|940507|scaffold_601051.1 651 0.0
Ahg924337 jgi|Araly1|924337|scaffold_105618.1 453 8e-127
Ahg484525 jgi|Araly1|484525|fgenesh2_kg.5__517__AT3G27360.1 436 8e-122
Ahg471009 jgi|Araly1|471009|fgenesh2_kg.1__963__AT1G09200.1 379 1e-104
> Ahg940507 jgi|Araly1|940507|scaffold_601051.1
Length=452
Score = 651 bits (352), Expect = 0.0
Identities = 410/438 (94%), Gaps = 3/438 (1%)
Strand=Plus/Plus
Query 61 TTGTTTGA--T-TTCGAAATGGCTCGTACTAAGCAAACCGCGAGGAAATCCACAGGAGGC 117
|||||||| | ||||| ||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 3 TTGTTTGATTTCTTCGAGATGGCTCGTACCAAGCAAACCGCTAGGAAATCCACCGGAGGC 62
Query 118 AAAGCACCAAGAAAGCAACTCGCAACCAAGGCGGCAAGGAAATCTGCTCCGGCCACCGGA 177
|||||||| || ||||| || ||||| |||||||| ||||||||||||||||||||||||
Sbjct 63 AAAGCACCGAGGAAGCAGCTGGCAACAAAGGCGGCGAGGAAATCTGCTCCGGCCACCGGA 122
Query 178 GGAGTGAAGAAGCCGCATAGATTCCGTCCAGGAACTGTTGCCTTGAGAGAGATCAGGAAG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GGAGTGAAGAAGCCGCATAGATTCCGTCCAGGAACTGTTGCCTTGAGAGAGATCAGGAAG 182
Query 238 TATCAGAAGAGCACTGAGCTTCTGATCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAG 297
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TACCAGAAGAGCACAGAGCTTCTGATCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAG 242
Query 298 ATAGCTCAGGATTTCAAGACGGATCTGAGGTTTCAGAGCAGTGCTGTTGCTGCTTTACAA 357
|| ||||||||||||||||||||||||||||| ||||||||||| || || |||||||||
Sbjct 243 ATTGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCTTTACAA 302
Query 358 GAGGCTGCTGAGGCTTACCTTGTTGGTTTGTTTGAAGACACTAATCTTTGCGCCATTCAC 417
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 303 GAGGCGGCTGAGGCTTACCTTGTTGGTTTGTTTGAAGACACTAACCTTTGCGCGATTCAC 362
Query 418 GCTAAGAGGGTCACCATCATGCCTAAGGATATCCAGCTCGCGAGGAGAATCAGAGGAGAA 477
|| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 363 GCCAAGAGGGTCACTATCATGCCTAAGGATATCCAGCTCGCAAGGAGGATCAGAGGAGAA 422
Query 478 AGAGCTTGAAGACTGTTG 495
|||||||||||||| |||
Sbjct 423 AGAGCTTGAAGACTTTTG 440
> Ahg924337 jgi|Araly1|924337|scaffold_105618.1
Length=451
Score = 453 bits (245), Expect = 8e-127
Identities = 357/412 (87%), Gaps = 4/412 (1%)
Strand=Plus/Plus
Query 75 AATGGCTCGTACTAAGCAAACCGCGAGGAAATCCACAGGAGGCAAAGCACCAAGAAAGCA 134
|||||||||||| ||||| || || |||||||| |||||||||||||||||||| |||||
Sbjct 20 AATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACAGGAGGCAAAGCACCAAGGAAGCA 79
Query 135 ACTCGCAACCAAGGCGGCAAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCGCA 194
| | ||||| || || || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 80 ATTAGCAACAAAAGCAGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAGCCTCA 139
Query 195 TAGATTCCGTCCAGGAACTGTTGCCTTGAGAGAGATCAGGAAGTATCAGAAGAGCACTGA 254
|||||| | || ||||| || || || ||||| ||||||||||||||||||||||||||
Sbjct 140 CAGATTCAGACCTGGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTGA 199
Query 255 GCTTCTGATCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAGATAGCTCAGGATTTCAA 314
||||||||||||||| |||||||||||| | || || | ||||| ||||| || |||||
Sbjct 200 GCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTGTGAGAGAGATTGCTCAAGACTTCAA 259
Query 315 GACGGATCTGAGGTTTC-AGAGCAGTGCTGTTGCTGCT-TTACAAGAGGCTGCTGAGGCT 372
||| ||||| | |||| |||| ||||||||||||||| || || || |||||||| |||
Sbjct 260 GACTGATCTCCG-TTTCCAGAGTAGTGCTGTTGCTGCTCTT-CAGGAAGCTGCTGAAGCT 317
Query 373 TACCTTGTTGGTTTGTTTGAAGACACTAATCTTTGCGCCATTCACGCTAAGAGGGTCACC 432
||||||||||| | |||||||||||||||||||| || ||||| |||||||| || ||
Sbjct 318 TACCTTGTTGGACTCTTTGAAGACACTAATCTTTGTGCTATTCATGCTAAGAGAGTTACT 377
Query 433 ATCATGCCTAAGGATATCCAGCTCGCGAGGAGAATCAGAGGAGAAAGAGCTT 484
||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 378 ATCATGCCTAAGGATATCCAGCTCGCGAGAAGAATTAGAGGAGAAAGAGCTT 429
> Ahg484525 jgi|Araly1|484525|fgenesh2_kg.5__517__AT3G27360.1
Length=605
Score = 436 bits (236), Expect = 8e-122
Identities = 364/426 (85%), Gaps = 8/426 (2%)
Strand=Plus/Plus
Query 68 ATT-TCGAAATGGCTCGTACTAAGCAAACCGCGAGGAAATCCACAGGAGGCAAAGCACCA 126
||| || |||||||| | || |||||||| || || |||||||| ||||| |||||||||
Sbjct 43 ATTCTCAAAATGGCTAGAACAAAGCAAACAGCCAGAAAATCCACCGGAGGAAAAGCACCA 102
Query 127 AGAAAGCAACTCGCAACCAAGGCGGCAAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAG 186
|| ||||||||||| || || || ||||| ||||| ||||| ||||||||||||||||||
Sbjct 103 AGGAAGCAACTCGCGACGAAAGCAGCAAGAAAATCAGCTCCAGCCACCGGAGGAGTGAAG 162
Query 187 AAGCCGCATAGATTCCGTCCAGGAACTGTTGCCTTGAGAGAGATCAGGAAGTATCAGAAG 246
||||| || ||||||||||||||||| || || || ||||| |||||||||||||| ||
Sbjct 163 AAGCCACACAGATTCCGTCCAGGAACAGTAGCGTTAAGAGAAATCAGGAAGTATCAAAAA 222
Query 247 AGCACTGAGCTTCTGATCCGTAAGCTTCCTTTCCAGCG-TCTGGTTCGTGAGATAGCTCA 305
|||||||||||| |||||||||||||||| |||||| | | ||||||||||||| |||||
Sbjct 223 AGCACTGAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGAT-TGGTTCGTGAGATTGCTCA 281
Query 306 GGATTTCAAGACGGATCTGAGGTTTCAGAGCAGTGCTGTTGCTGCT-TTACAAGAGGCTG 364
||||||||||||||||||||||||||||| ||||| || || ||| || ||||| || |
Sbjct 282 AGATTTCAAGACGGATCTGAGGTTTCAGAGTAGTGCAGTCGCAGCTCTT-CAAGAAGCAG 340
Query 365 CTGAGGCTTACCTTG-TTGGTTTGTTTGAAGACACTAATCTTTGCGCCATTCACGCTAAG 423
|||| || || ||| |||||||||||||||| ||||||||||| || ||||| ||||||
Sbjct 341 CTGAAGCCTAT-TTGGTTGGTTTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAG 399
Query 424 AGGGTCACCATCATGCCTAAGGATATCCAGCTCGCGAGGAGAATCAGAGGAGAAAGAGCT 483
||||| || || |||||||||||||| || || |||||||| || ||||| || ||||||
Sbjct 400 AGGGTTACGATTATGCCTAAGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGAGAGCT 459
Query 484 TGAAGA 489
| ||||
Sbjct 460 T-AAGA 464
> Ahg471009 jgi|Araly1|471009|fgenesh2_kg.1__963__AT1G09200.1
Length=464
Score = 379 bits (205), Expect = 1e-104
Identities = 343/411 (83%), Gaps = 4/411 (1%)
Strand=Plus/Plus
Query 76 ATGGCTCGTACTAAGCAAACCGCGAGGAAATCCACAGGAGGCAAAGCACCAAGAAAGCAA 135
||||||||||| ||||| || || |||||||| || ||||||||||| ||||| ||||||
Sbjct 38 ATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACCGGAGGCAAAGCTCCAAGGAAGCAA 97
Query 136 CTCGCAACCAAGGCGGCAAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCGCAT 195
| || || || ||||| |||||||||||||| |||||||||||||||||||| || ||
Sbjct 98 TTGGCGACAAAAGCGGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAACCTCAC 157
Query 196 AGATTCCGTCCAGGAACTGTTGCCT-TGAGAGAGATCAGGAAGTATCAGAAGAGCACTGA 254
|||||| | || ||||| || | || | ||||| ||||||||||| ||||||||||||||
Sbjct 158 AGATTCAGACCCGGAACCGTAG-CTCTAAGAGAAATCAGGAAGTACCAGAAGAGCACTGA 216
Query 255 GCTTCTGATCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAGATAGCTCAGGATTTCAA 314
||||||||||||||| |||||||||||| | || || | ||||| ||||||||||||||
Sbjct 217 GCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTGTGAGAGAGATCGCTCAGGATTTCAA 276
Query 315 GACGGATCTGAGGTTTC-AGAGCAGTGCTGTTGCTGCTTTACAAGAGGCTGCTGAGGCTT 373
||| ||||| | |||| |||||||||| || || || | || || |||||||| || |
Sbjct 277 GACCGATCTCCG-TTTCCAGAGCAGTGCCGTCGCCGCCCTCCAGGAAGCTGCTGAAGCAT 335
Query 374 ACCTTGTTGGTTTGTTTGAAGACACTAATCTTTGCGCCATTCACGCTAAGAGGGTCACCA 433
|||| || || | || |||||||| ||||| ||||| ||||| || ||||| ||||| |
Sbjct 336 ACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCTATTCATGCCAAGAGAGTCACAA 395
Query 434 TCATGCCTAAGGATATCCAGCTCGCGAGGAGAATCAGAGGAGAAAGAGCTT 484
||||||| ||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 396 TCATGCCCAAGGACATCCAGCTCGCAAGAAGAATCAGAGGAGAAAGAGCTT 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25885460643
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5