BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10400.1
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487869 jgi|Araly1|487869|fgenesh2_kg.6__1003__AT5G10400.1 704 0.0
Ahg484525 jgi|Araly1|484525|fgenesh2_kg.5__517__AT3G27360.1 571 2e-162
Ahg940507 jgi|Araly1|940507|scaffold_601051.1 468 3e-131
Ahg924337 jgi|Araly1|924337|scaffold_105618.1 460 4e-129
> Ahg487869 jgi|Araly1|487869|fgenesh2_kg.6__1003__AT5G10400.1
Length=523
Score = 704 bits (381), Expect = 0.0
Identities = 437/465 (94%), Gaps = 0/465 (0%)
Strand=Plus/Plus
Query 62 AAAATGGCTCGTACCAAGCAAACAGCTCGTAAATCCACCGGAGGAAAGGCACCAAGGAAG 121
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1 AAAATGGCTCGTACCAAGCAAACAGCTCGCAAATCCACCGGAGGAAAGGCTCCAAGGAAG 60
Query 122 CAACTCGCGACCAAAGCTGCGAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCA 181
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CAACTCGCGACTAAAGCAGCGAGGAAATCAGCTCCAGCAACCGGAGGAGTGAAGAAGCCA 120
Query 182 CACAGATTCCGTCCAGGAACGGTGGCGTTGAGAGAAATCAGGAAGTATCAGAAGAGTACT 241
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CACAGATTCCGTCCAGGAACTGTGGCGTTGAGAGAAATCAGGAAGTATCAAAAGAGTACT 180
Query 242 GAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTTC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTTC 240
Query 302 AAGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCTCTTCAGGAAGCAGCTGAGGCT 361
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 241 AAGACGGATCTGAGGTTCCAGAGCAGTGCTGTGGCGGCTCTTCAGGAAGCAGCTGAGGCT 300
Query 362 TATCTTGTTGGGCTCTTTGAAGATACTAATCTCTGTGCGATTCATGCTAAGAGGGTTACG 421
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||| || ||
Sbjct 301 TATCTTGTTGGGCTTTTTGAGGATACTAATCTTTGTGCGATTCATGCTAAGAGAGTAACC 360
Query 422 ATTATGCCTAAGGATATCCAGCTTGCGAGGAGAATCAGAGGAGAGAGGGCTTAAGTGAAC 481
|| ||||||||||| || |||||||||||||| |||||||||||||||||||||| |||
Sbjct 361 ATCATGCCTAAGGACATTCAGCTTGCGAGGAGGATCAGAGGAGAGAGGGCTTAAGACAAC 420
Query 482 GAAGATGATGAAGATTAAGAAGACTAGTCGTTTAGTTATGGATTA 526
|| || || ||||| ||||||| |||||||||||||||||||||
Sbjct 421 GATGAAGAAGAAGAAGAAGAAGAATAGTCGTTTAGTTATGGATTA 465
> Ahg484525 jgi|Araly1|484525|fgenesh2_kg.5__517__AT3G27360.1
Length=605
Score = 571 bits (309), Expect = 2e-162
Identities = 405/451 (90%), Gaps = 8/451 (2%)
Strand=Plus/Plus
Query 62 AAAATGGCTCGTACCAAGCAAACAGCTC-GTAAATCCACCGGAGGAAAGGCACCAAGGAA 120
||||||||| | || ||||||||||| | | ||||||||||||||||| |||||||||||
Sbjct 49 AAAATGGCTAGAACAAAGCAAACAGC-CAGAAAATCCACCGGAGGAAAAGCACCAAGGAA 107
Query 121 GCAACTCGCGACCAAAGCTGCGAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCC 180
|||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 108 GCAACTCGCGACGAAAGCAGCAAGAAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCC 167
Query 181 ACACAGATTCCGTCCAGGAACGGTGGCGTTGAGAGAAATCAGGAAGTATCAGAAGAGTAC 240
||||||||||||||||||||| || ||||| |||||||||||||||||||| || || ||
Sbjct 168 ACACAGATTCCGTCCAGGAACAGTAGCGTTAAGAGAAATCAGGAAGTATCAAAAAAGCAC 227
Query 241 TGAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TGAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTT 287
Query 301 CAAGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCTCTTCAGGAAGCAGCTGAGGC 360
|||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct 288 CAAGACGGATCTGAGGTTTCAGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGC 347
Query 361 TTATCTTG-TTGGGCTCTTTGAAGATACTAATCTCTGTGCGATTCATGCTAAGAGGGTTA 419
||| ||| |||| | ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 348 CTAT-TTGGTTGGTTTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTTA 406
Query 420 CGATTATGCCTAAGGATATCCAGCTTGCGAGGAGAATCAGAGGAGAGAGGGCTTAAG-T- 477
||||||||||||||||||| || ||||||||||| || ||||| ||||| ||||||| |
Sbjct 407 CGATTATGCCTAAGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGAGAGCTTAAGATA 466
Query 478 -GAACGAAGATGATGAAGATTAAGAAGACTA 507
|| ||||| || ||||| |||||| |||
Sbjct 467 TGAT-GAAGAGGAAGAAGAAGAAGAAGGCTA 496
Score = 76.8 bits (41), Expect = 2e-13
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 596 AGATGTGTCTTCCAGATGTTCGATGAAATGCCTAAAGGAAATTTTAATCTACT 648
||| |||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 553 AGAAGTGTCTTCCAGATGTTCGATGAAATGCCCAAATGAAAATTTAATCTACT 605
> Ahg940507 jgi|Araly1|940507|scaffold_601051.1
Length=452
Score = 468 bits (253), Expect = 3e-131
Identities = 364/417 (87%), Gaps = 9/417 (2%)
Strand=Plus/Plus
Query 65 ATGGCTCGTACCAAGCAAACAGCTCGTAAATCCACCGGAGG-AAAGGCACCAAGGAAGCA 123
|||||||||||||||||||| ||| | |||||||||||||| ||| ||||| ||||||||
Sbjct 21 ATGGCTCGTACCAAGCAAACCGCTAGGAAATCCACCGGAGGCAAA-GCACCGAGGAAGCA 79
Query 124 ACTCGCGACCAAA-GCTGCGAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCAC 182
|| || | |||| || ||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 80 GCTGGC-AACAAAGGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCGC 138
Query 183 ACAGATTCCGTCCAGGAACGGTGGCGTTGAGAGAAATCAGGAAGTATCAGAAGAGTACTG 242
| ||||||||||||||||| || || |||||||| ||||||||||| |||||||| || |
Sbjct 139 ATAGATTCCGTCCAGGAACTGTTGCCTTGAGAGAGATCAGGAAGTACCAGAAGAGCACAG 198
Query 243 AGCTTTTGATCCGTAAGCTTCCGTTCCAGAGAT-TGGTTCGTGAGATTGCTCAAGATTTC 301
||||| |||||||||||||||| |||||| | | ||||||||||||||||||| ||||||
Sbjct 199 AGCTTCTGATCCGTAAGCTTCCTTTCCAGCG-TCTGGTTCGTGAGATTGCTCAGGATTTC 257
Query 302 AAGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCTCTT-CAGGAAGCAGCTGAGGC 360
||||||||||||||||||||||||||||||||||||||| || || || || ||||||||
Sbjct 258 AAGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCT-TTACAAGAGGCGGCTGAGGC 316
Query 361 TTATCTTGTTGGGCTCTTTGAAGATACTAATCTCTGTGCGATTCATGCTAAGAGGGTTAC 420
||| |||||||| | |||||||| ||||| || || |||||||| || |||||||| ||
Sbjct 317 TTACCTTGTTGGTTTGTTTGAAGACACTAACCTTTGCGCGATTCACGCCAAGAGGGTCAC 376
Query 421 GATTATGCCTAAGGATATCCAGCTTGCGAGGAGAATCAGAGGAGAGAGGGCTT-AAG 476
|| |||||||||||||||||||| || ||||| ||||||||||| || |||| |||
Sbjct 377 TATCATGCCTAAGGATATCCAGCTCGCAAGGAGGATCAGAGGAGAAAGAGCTTGAAG 433
> Ahg924337 jgi|Araly1|924337|scaffold_105618.1
Length=451
Score = 460 bits (249), Expect = 4e-129
Identities = 359/413 (87%), Gaps = 4/413 (1%)
Strand=Plus/Plus
Query 64 AATGGCTCGTACCAAGCAAACAGCTCGTAAATCCACCGGAGG-AAAGGCACCAAGGAAGC 122
|||||||||||||||||| |||||| | ||||| || ||||| ||| |||||||||||||
Sbjct 20 AATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACAGGAGGCAAA-GCACCAAGGAAGC 78
Query 123 AACTCGCGACCAAAGCTGCGAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCAC 182
|| | || || ||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 79 AATTAGCAACAAAAGCAGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAGCCTC 138
Query 183 ACAGATTCCGTCCAGGAACGGTGGCGTTGAGAGAAATCAGGAAGTATCAGAAGAGTACTG 242
|||||||| | || ||||| ||||| || |||||||||||||||||||||||||| ||||
Sbjct 139 ACAGATTCAGACCTGGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTG 198
Query 243 AGCTTTTGATCCGTAAGCTTCCGTTCCAGAGA-TTGGTTCGTGAGATTGCTCAAGATTTC 301
||||| |||||||||| ||||| |||||||| ||| | | |||||||||||||| |||
Sbjct 199 AGCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTG-TGAGAGAGATTGCTCAAGACTTC 257
Query 302 AAGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCTCTTCAGGAAGCAGCTGAGGCT 361
||||| ||||| | |||||||| ||||| || || |||||||||||||| ||||| |||
Sbjct 258 AAGACTGATCTCCGTTTCCAGAGTAGTGCTGTTGCTGCTCTTCAGGAAGCTGCTGAAGCT 317
Query 362 TATCTTGTTGGGCTCTTTGAAGATACTAATCTCTGTGCGATTCATGCTAAGAGGGTTACG 421
|| |||||||| ||||||||||| |||||||| ||||| |||||||||||||| |||||
Sbjct 318 TACCTTGTTGGACTCTTTGAAGACACTAATCTTTGTGCTATTCATGCTAAGAGAGTTACT 377
Query 422 ATTATGCCTAAGGATATCCAGCTTGCGAGGAGAATCAGAGGAGAGAGGGCTTA 474
|| |||||||||||||||||||| ||||| ||||| |||||||| || |||||
Sbjct 378 ATCATGCCTAAGGATATCCAGCTCGCGAGAAGAATTAGAGGAGAAAGAGCTTA 430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24360543963
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5