BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10440.1
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487872 jgi|Araly1|487872|fgenesh2_kg.6__1006__AT5G10440.1 1408 0.0
Ahg918339 jgi|Araly1|918339|Al_scaffold_0008_3090 520 1e-146
> Ahg487872 jgi|Araly1|487872|fgenesh2_kg.6__1006__AT5G10440.1
Length=959
Score = 1408 bits (762), Expect = 0.0
Identities = 907/974 (93%), Gaps = 22/974 (2%)
Strand=Plus/Plus
Query 1 TTCCTCCAAATCCTGTAACAGTAAAATTTGTATAGATCGAAAGAAAGCTACAATTTTTGA 60
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1 TTCCTCCAAATCCTGTAACAGTAAAATTTGTATAGATCG-AA-AAAGCTACAATTTTTGT 58
Query 61 CGCTCTATAATGGCTGAATTTATGGAACCAAATCTTGTATCCAATTTTGATGATG-AGAA 119
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| | ||
Sbjct 59 CGCTCTATAATGGCTGAATTCATGGAACCAAATCTCGTATCCAATTTCGATGATGCA-AA 117
Query 120 GAGCAA-TTCTGTCGACACAAGATCGATTTTTCAGATGGGTTTTCCTCTGgagagcgaag 178
|| ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 118 GAACAACTT-TGTCGACACAACATCGATTTTTCAGATGGGTTTTCCTCTGGAGAGCGAAG 176
Query 179 agatcgttagagagatgattga-gaaagagagacaacactcaccgagagatgattacctc 237
|||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 177 AGATCGTTAGAGAGATGATT-ATGAAAGAGAGACAACATTCACCGAGAGATGATTACCTC 235
Query 238 aagagactgagaAACGGAGATTTGGATTTCAATGTCAG-AATCCAAGCCCTTGGTTGGAT 296
|||||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||
Sbjct 236 AAGAGACTGAGAAATGGAGATTTGGATTTCAATGTCAGAAAT-CAAGCCCTTGATTGGAT 294
Query 297 TTGGAAGGCCTGTGAGGAACTTCAATTTGGACCATTGTGTATATGTCTAGCAATGAACTA 356
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TTGGAAGGTCTGTGAGGAACTTCAATTTGGACCATTGTGTATATGTCTAGCAATGAACTA 354
Query 357 CTTGGATCGTTTCTTATCTGTTCATGACTTACCTAGTGGAAAAGCTTGGACTGTACAATT 416
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 355 CTTGGATCGTTTCTTATCTGTTCATGACTTGCCTAATGGAAAAGCTTGGACTGTGCAATT 414
Query 417 GTTGGCTGTTGCTTGTTTATCATTGGCAGCTAAAATAGAGGAAACTAATGTTCCAGAGTT 476
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 415 GTTGGCTGTAGCTTGTTTATCATTGGCAGCTAAGATAGAGGAAACTAATGTTCCAGAGTT 474
Query 477 AATGCAGCTGCAGGTTGGAGCTCCCATGTTCGTGTTTGAGGCTAAATCAGTTCAAAGGAT 536
||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 475 AATACATCTGCAGGTTGGAGATCCCTTGTTCGTGTTTGAGGCTAAATCAGTTCAAAGGAT 534
Query 537 GGAACTTTTGGTGTTGAACGTATTGAGATGGAGGTTACGGGCAGTGACACCGTGCTCTTA 596
||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 535 GGAACATTTAGTGTTGAACGTATTGAGATGGAGGTTACGAGCAGTGACACCGTGCTCTTA 594
Query 597 CGTTAGATACTTCCTGAGTAAGATCAATGGCTATGATCAAGAACCACATAGCAGATTGGT 656
|||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 595 CGTTAGATACTTCCTGTGTAAGATCAATGGTTATGATCAAGAACCACACAGCAGATTGAT 654
Query 657 AACTAGATCACTACAAGTGATAGCCAGCACAACCAAAGGTATTGACTTCTTGGAGTTTAG 716
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ATCTAGATCACTACAAGTGATAGCCAGCACAACCAAAGGTATTGACTTCTTGGAGTTTAG 714
Query 717 AGCTTCAGAGATTGCTGCTGCAGTTGCTCTTTCTGTTTCTGGAGAACACTTTGACAAATT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AGCTTCAGAGATTGCTGCTGCAGTTGCTCTTTCTGTTTCTGGAGAACACTTTGACAAATT 774
Query 777 CTCCTTCT-CTT-CTTCCTTCTCAAGCCTT-GAAAAGGAGAGAGTGAAGAAGATTGGTGA 833
|||||||| || | |||| ||| | |||| ||||||| ||||||||||||||||
Sbjct 775 CTCCTTCTTCTCACA-CCTTGAAAAGG-TAAGAAA-GGAGAGAATGAAGAAGATTGGTGA 831
Query 834 AATGATAGAGAGAGACGGATCAAGTTCAAGTTCACAAACACCAAATAATACAGTCTTACA 893
||||||||||||||| |||||||||||||||||||||||||| || |||| ||||| ||
Sbjct 832 AATGATAGAGAGAGATGGATCAAGTTCAAGTTCACAAACACCCAAGAATATGGTCTTGCA 891
Query 894 ATTTAAGAGTCGTCGTTATTCTCATTCTCTTTCTACTGCTTCTGtttcctcctccctcac 953
|| ||| | || ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 892 ATATAATACTCATCG-----CT-ATTCTCTTTCTACTGCTTCTGTTTCCTCCTCCCTCAC 945
Query 954 ttctctttcttaat 967
||||||||||||||
Sbjct 946 TTCTCTTTCTTAAT 959
> Ahg918339 jgi|Araly1|918339|Al_scaffold_0008_3090
Length=918
Score = 520 bits (281), Expect = 1e-146
Identities = 608/759 (80%), Gaps = 49/759 (6%)
Strand=Plus/Plus
Query 150 TCAGATGGGTTT-TCCTC--T-Ggagagcgaagagatcgttagagagatgattgagaaag 205
|||||||||||| | ||| | |||||| |||||| | | ||||||||| | ||||| |
Sbjct 102 TCAGATGGGTTTAT-CTCAATCGGAGAGTGAAGAGTTTATCAGAGAGATGGTGGAGAAGG 160
Query 206 ag-agacaacactcaccgagagatgattacctcaagagactgagaAACGGAGATTTGGAT 264
|| || || || | || || ||||||||| |||||||||| |||| ||||||||||||
Sbjct 161 AGAAG-CAGCATTTGCCAAGTGATGATTACATCAAGAGACTCAGAAGTGGAGATTTGGAT 219
Query 265 TTCAATG-T--CAGAATCCAAGCCCTTGGTTGGATTTGGAAGGCCTGTGAGGAACTTCAA 321
|| |||| | |||| ||||||| ||||||||||||||| ||| |||||| ||
Sbjct 220 TTGAATGTTGGAAGAAGAGAAGCCCTCAATTGGATTTGGAAGGCTTGTAAGGAACACCAG 279
Query 322 TTTGGACCATTGTGTATATGTC-TAGCAATGAACTACTTGGATCGTTTCTTATCTGTTCA 380
||||||||||||||| | || | || ||||||||||||||||||| |||||||| |||||
Sbjct 280 TTTGGACCATTGTGTTTTTG-CTTATCAATGAACTACTTGGATCGATTCTTATCGGTTCA 338
Query 381 TGACT-TACCTAGTGG-AAAAGCTTGGACT-GTACAATTGTTGGCTGTTGCTTGTTTATC 437
||| | | |||||||| ||||| ||||| | | || ||||||| ||| |||||||||||
Sbjct 339 TGA-TCTGCCTAGTGGCAAAAG-TTGGA-TATTGCAGTTGTTGGATGTGGCTTGTTTATC 395
Query 438 ATTGGCAGCTAAAATAGAGGAAACT-AATGTTCCAGA-GTTAA-TGCAGCTGCAGGTTGG 494
|||||||| ||||| || |||||| || |||||| | ||||| || | || ||||||||
Sbjct 396 CTTGGCAGCCAAAATTGAAGAAACTGAA-GTTCCA-ATGTTAATTG-AACTTCAGGTTGG 452
Query 495 AGCTCC-CATGTTCGTGTTTGAGGCTAAATCAGTTCAAAGGATGGAACTTTTGGTGTTGA 553
|| ||| || ||| ||||||||||| |||||||| ||||| ||||||||||||||| |||
Sbjct 453 AGATCCTCA-GTTTGTGTTTGAGGCGAAATCAGTCCAAAGAATGGAACTTTTGGTGCTGA 511
Query 554 AC-GTATTGAGATGGAGGTT-ACGGGCAGTGACACCGTGCTCTTACGTTAGATACTTCCT 611
|| | ||||| |||||| || | | ||| | || || ||||| ||| | ||||| ||| |
Sbjct 512 ACAG-ATTGAAATGGAGATTGA-GAGCAATAACTCCATGCTCATACATAAGATATTTCTT 569
Query 612 GAGTAAGATCAATGGCTATGATCAAGAACCA--CATAGCAGATTGGTAACTAGATCACTA 669
||| ||||| | | | ||||||||||||| || | || |||| || | |||||||||
Sbjct 570 GAGAAAGATGAGTAAATGTGATCAAGAACCATCCA-A-CACATTGATATCCAGATCACTA 627
Query 670 CAAGTGATAGCCAGCACAACCAAAGGTATTGACTTCT-TGGAGTTTAGAGCTTCAGA-GA 727
||||||||||||||||||||||||||||||||||| | ||||||||||| |||| || |
Sbjct 628 CAAGTGATAGCCAGCACAACCAAAGGTATTGACTT-TATGGAGTTTAGACCTTCTGAAG- 685
Query 728 TTGCTGCTGCAGTTGCTCTTTCTGTTTCTGGAGAA---CACTTTG-ACAAATTCTC--CT 781
|||||||||| || || |||||||||||||||||| ||| | ||| || | ||
Sbjct 686 TTGCTGCTGCTGTGGCACTTTCTGTTTCTGGAGAATTGCACACAGTACACTTTGACAACT 745
Query 782 TCTCTTCTTCCTTCTCAAGCCTTGAAAAGGAGAGAGTGAAGAAGATTGGTGAAATGATAG 841
||| |||| |||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct 746 -CTCCTCTT--TTCTCACTACTTCAAAAGGAGAGAGTGAAGAAGATTGGGGAAATGATAC 802
Query 842 AGAGAGACGGATCAAG-TTCAAGTTCACAAACACCAAAT 879
|||| || || ||| | || | ||||||||||||| |||
Sbjct 803 AGAGTGATGGTTCAGGCTT-ATGTTCACAAACACCCAAT 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5