BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10450.4
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940513 jgi|Araly1|940513|scaffold_601057.1 1275 0.0
Ahg496774 jgi|Araly1|496774|fgenesh2_kg.8__2590__AT5G65430.1 795 0.0
Ahg942561 jgi|Araly1|942561|scaffold_603105.1 307 1e-82
> Ahg940513 jgi|Araly1|940513|scaffold_601057.1
Length=787
Score = 1275 bits (690), Expect = 0.0
Identities = 728/746 (98%), Gaps = 3/746 (0%)
Strand=Plus/Plus
Query 69 tctctctt-tctctctctAATGGCGGCGACATTAGGCAGAGACCAGTATGTGTACATGGC 127
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCTCTCTTCTCTCTCTCTAATGGCGGCGACATTAGGCAGAGACCAGTATGTGTACATGGC 61
Query 128 GAAGCTCGCCGAGCAGGCGGAGCGTTACGAAGAGATGGTTCAATTCATGGAACAGCTCGT 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GAAGCTCGCCGAGCAGGCGGAGCGTTACGAAGAGATGGTTCAATTCATGGAACAGCTCGT 121
Query 188 TACAGGCGCTACTCCAGCGGAAGAGCTCACCGTTGAAGAGAGGAATCTCCTCTCTGTTGC 247
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TACAGGCGCTACTCCGGCGGAAGAGCTCACCGTTGAAGAGAGGAATCTCCTCTCTGTTGC 181
Query 248 TTACAAAAACGTGATCGGATCTCTACGCGCCGCCTGGAGGATCGTGTCTTCGATTGAGCA 307
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 182 TTACAAAAACGTGATCGGATCTCTACGCGCCGCCTGGAGGATCGTGTCCTCTATTGAGCA 241
Query 308 GAAGGAAGAGAGTAGGAAGAACGACGAGCACGTGTCGCTTGTCAAGGATTACAGATCTAA 367
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GAAGGAAGAGAGTCGTAAGAACGACGAGCACGTGTCGCTTGTCAAGGATTACAGATCTAA 301
Query 368 AGTTGAGTCTGAGCTTTCTTCTGTTTGCTCTGGAATCCTTAAGCTCCTTGACTCGCATCT 427
||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 302 AGTTGAGACTGAGCTTTCTTCAGTTTGCTCTGGAATTCTTAAGCTCCTTGACTCGCATCT 361
Query 428 GATCCCATCTGCTGGAGCGAGTGAGTCTAAGGTCTTTTACTTGAAGATGAAAGGTGATTA 487
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GATCCCATCTGCTGGAGCTAGTGAGTCTAAGGTCTTTTACTTGAAGATGAAAGGTGATTA 421
Query 488 TCATCGGTACATGGCTGAGTTTAAGTCTGGTGATGAGAGGAAAACTGCTGCTGAAGATAC 547
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCATCGTTACATGGCTGAGTTTAAGTCTGGTGATGAGAGGAAAACTGCTGCTGAAGATAC 481
Query 548 CATGCTCGCTTACAAAGCAGCTCAGGATATCGCAGCTGCGGATATGGCACCTACTCATCC 607
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CATGCTCGCTTACAAAGCTGCTCAGGATATCGCAGCTGCGGATATGGCACCTACTCATCC 541
Query 608 GATAAGGCTTGGTCTGGCCCTGAATTTCTCAGTGTTCTACTATGAGATTCTCAATTCTTC 667
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 542 AATAAGGCTTGGTCTGGCCCTGAATTTCTCAGTCTTCTACTATGAGATTCTCAATTCTTC 601
Query 668 AGACAAAGCTTGTAACATGGCCAAACAGGCTTTTGAGGAGGCCATAGCTGAGCTTGACAC 727
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 602 AGACAAAGCTTGTAACATGGCCAAACAGGCTTTTGAAGAAGCCATAGCTGAGCTTGACAC 661
Query 728 -TCTGGGAGAGGAATCCTACAAAGACAGCACTCTCATAATGCAGTTGCTGAGGGACAATT 786
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AT-TGGGAGAGGAATCCTACAAAGACAGCACTCTCATAATGCAGTTGCTGAGGGACAATT 720
Query 787 TAACCCTTTGGACCTCCGATATGCAG 812
||||||||||||||||||||||||||
Sbjct 721 TAACCCTTTGGACCTCCGATATGCAG 746
Score = 75.0 bits (40), Expect = 2e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 909 CAGGAGCAGATGGACGAGGCCTGAGGATCTAGATGAAgggggg 951
||||||||||||||||||||||||||||||||| |||||||||
Sbjct 744 CAGGAGCAGATGGACGAGGCCTGAGGATCTAGAGGAAGGGGGG 786
> Ahg496774 jgi|Araly1|496774|fgenesh2_kg.8__2590__AT5G65430.1
Length=1016
Score = 795 bits (430), Expect = 0.0
Identities = 638/740 (86%), Gaps = 7/740 (1%)
Strand=Plus/Plus
Query 76 ttctctctctAATGGCGGCGACATTAGGCAGAGACCAGTATGTGTACATGGCGAAGCTCG 135
|||| |||||||||||| |||| ||| |||||| || || ||||||||||||||||| |
Sbjct 13 TTCT-TCTCTAATGGCGACGACGTTAAACAGAGATCAATACGTGTACATGGCGAAGCTTG 71
Query 136 CCGAGCAGGCGGAGCGTTACGAAGAGATGGTTCAATTCATGGAACAGCTCGTTACAGGCG 195
| ||||| || |||||||||||||||||||||||||||||||| |||||||| | || |
Sbjct 72 CTGAGCAAGCTGAGCGTTACGAAGAGATGGTTCAATTCATGGAGCAGCTCGTAAGTGGAG 131
Query 196 CTACTCCAGC-GGAAGAGCTCACCGTTGAAGAGAGGAATCTCCTCTCTGTTGCTTACAAA 254
|||| || || || || ||||| ||||||||||||||||| ||||| || || || ||
Sbjct 132 CTACACCGGCCGGT-GAACTCACGGTTGAAGAGAGGAATCTTCTCTCCGTCGCGTATAAG 190
Query 255 AACGTGATCGGATCTCTACGCGCCGCCTGGAGGATCGTGTCTTCGATTGAGCAGAAGGAA 314
||||||||||||||||| || || || ||||| ||||| |||||||||||||| ||||||
Sbjct 191 AACGTGATCGGATCTCTTCGTGCGGCATGGAGAATCGTTTCTTCGATTGAGCAAAAGGAA 250
Query 315 GAGAGTAGGAAGAACGACGAGCACGTGTCGCTTGTCAAGGATTACAGATCTAAAGTTGAG 374
||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 251 GAGAGCAGGAAGAACGAAGAACACGTGTCGCTTGTTAAGGATTACAGATCTAAAGTTGAG 310
Query 375 TCTGAGCTTTCTTCTGTT-TGCTCTGGAATCCTTAAGCTCCTTGACTCGCATCTGATCCC 433
|||||||||||| | | || |||||||| || | | | ||||| ||||||||||| ||
Sbjct 311 AGTGAGCTTTCTTC-GATCTGTTCTGGAATTCTCAGGTTGCTTGATTCGCATCTGATTCC 369
Query 434 ATCTGCTGGAGCGAGTGAGTCTAAGGTCTTTTACTTGAAGATGAAAGGTGATTATCATCG 493
|| ||| || |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 370 TTCAGCTACTGCTAGTGAGTCTAAGGTTTTTTACTTGAAGATGAAAGGAGATTATCATCG 429
Query 494 GTACATGGCTGAGTTTAAGTCTGGTGATGAGAGGAAAACTGCTGCTGAAGATACCATGCT 553
|| ||||||||||||| |||||||||||||||||||| ||||| |||||||| ||| |
Sbjct 430 TTATTTGGCTGAGTTTAAATCTGGTGATGAGAGGAAAACAGCTGCGGAAGATACTATGAT 489
Query 554 CGCTTACAAAGCAGCTCAGGATATCGCAGCTGCGGATATGGCACCTACTCATCCGATAAG 613
|||||||||||| |||||||| | || | ||| ||| | ||||| || |||||||| ||
Sbjct 490 CGCTTACAAAGCTGCTCAGGACGTTGCGGTTGCTGATCTAGCACCAACACATCCGATCAG 549
Query 614 GCTTGGTCTGGCCCTGAATTTCTCAGTGTTCTACTATGAGATTCTCAATTCTTCAGACAA 673
||| |||||||| || |||||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct 550 GCTGGGTCTGGCTCTCAATTTCTCAGTGTTTTACTACGAGATTCTCAACTCTTCAGAGAA 609
Query 674 AGCTTGTAACATGGCCAAACAGGCTTTTGAGGAGGCCATAGCTGAGCTTGACAC-TCTGG 732
|||||||| ||||||||||||||||||||| || ||||| |||||||| ||||| | |||
Sbjct 610 AGCTTGTAGCATGGCCAAACAGGCTTTTGAAGAAGCCATTGCTGAGCTGGACACAT-TGG 668
Query 733 GAGAGGAATCCTACAAAGACAGCACTCTCATAATGCAGTTGCTGAGGGACAATTTAACCC 792
||||||| || ||||| ||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct 669 GAGAGGAGTCATACAAGGACAGTACTCTCATCATGCAGTTGCTGAGGGACAATCTAACCC 728
Query 793 TTTGGACCTCCGATATGCAG 812
||||||||||||||||||||
Sbjct 729 TTTGGACCTCCGATATGCAG 748
> Ahg942561 jgi|Araly1|942561|scaffold_603105.1
Length=848
Score = 307 bits (166), Expect = 1e-82
Identities = 541/716 (76%), Gaps = 49/716 (7%)
Strand=Plus/Plus
Query 120 TACATGGCGAAGCTCGCCGAGCAGGCGGAGCGTTACGAAGAGATGGTTCAATTCATGG-A 178
||||||||||| ||||| || || || |||||||||||||| |||||| ||||||||| |
Sbjct 70 TACATGGCGAAACTCGCTGAACAAGCAGAGCGTTACGAAGAAATGGTTGAATTCATGGAA 129
Query 179 ACAGCTCGTTACAGGCGCTACT-CCAGCGGAAGAGCTCACCGTTGAAGAGA-GGAATCTC 236
| || ||| || ||| | || || || |||||||| ||||| | | ||||||
Sbjct 130 AAAG-TCG---CAAAAGCTGTTGACA-AAGACGAACTCACCGTCGAAGA-ACGTAATCTC 183
Query 237 CTCTCTGTTGCTTACAAAAACGTGATCGGATCTC-TACGCGCCGCCTGGAGGATCGTGTC 295
||||| || |||||||||||||| |||||| ||| | || || | ||||| ||| | ||
Sbjct 184 CTCTCCGTCGCTTACAAAAACGTCATCGGAGCTCGT-CGTGCTTCATGGAGAATCATCTC 242
Query 296 TTCGATTGAGCAGAAGGAAGAGAGTAGGAAG-AACGACGAGCACGTGTCGCTTG-TCAAG 353
||||| || || ||||||||| | | | ||||| || ||||| ||| ||| || |
Sbjct 243 ATCGATCGAACAAAAGGAAGAGTCT-CGTGGTAACGATGACCACGTTTCG-TTGATC-CG 299
Query 354 -GATTACAG-ATCTAAAGTTGAGTCTGAGCTTTCT--TCTGTTTGCTCTGGAATCCTTAA 409
|| ||||| | | ||| | || | ||||||||| | | | || | |||||||||||
Sbjct 300 TGACTACAGAAGC-AAAATCGAAACGGAGCTTTCTGATATCTGTG-AC-GGAATCCTTAA 356
Query 410 GCTCCTTGACT-CGCA-TCT-GATCCCATCTGCTGGAGC-GAGTGAGTCTAAGGTCTTTT 465
||| || || | || | ||| | |||| |||||| | | | || || ||||| ||||
Sbjct 357 GCTTCTCGA-TACG-ATTCTCGTTCCC-GCTGCTGCTTCTG-GAGATTCAAAGGTGTTTT 412
Query 466 ACTTGAAGATGAAAGGTGATTATCATCGGTACATGGCTGAGTTTAAGTCTGGTGATGAGA 525
|||||||||||||||||||||||||| | ||| ||||||||||||| |||||| | ||||
Sbjct 413 ACTTGAAGATGAAAGGTGATTATCATAGATACTTGGCTGAGTTTAAATCTGGTCAAGAGA 472
Query 526 GGAAA-ACTGCTGCTGAAGATAC-CATG-CTCGCTTACAAAGCAGCTCAGGATATCGC-A 581
||||| | |||||||||| |||| | | || ||||||||||| ||||||||||| || |
Sbjct 473 GGAAAGA-TGCTGCTGAACATACAC-TCACT-GCTTACAAAGCTGCTCAGGATATTGCTA 529
Query 582 GCTGCGGATAT-GGCACCTACTCATCCGATAAGGCTTGGTCTGGCCCTGAATTTCTCAGT 640
|| | || || ||| || || |||||||| | |||||| | || |||| ||||| ||
Sbjct 530 ACT-CTGA-ATTGGCTCCAACGCATCCGATTCGTCTTGGTTTAGCGTTGAACTTCTCTGT 587
Query 641 GTTCTACTATGAGATTCTCAATTCTTCAGA-CAAAGCTTGTAA-CATGGCCAAACAGGCT 698
||| ||||||||||||||||||||| | || | |||||||| | | || || |||||
Sbjct 588 GTTTTACTATGAGATTCTCAATTCTCCTGATCGT-GCTTGTAATC-TCGCTAAGCAGGCG 645
Query 699 TTTGAGGAGGCCATAGCTGAGCTTG-ACACTCTGGGAGAGGAATCCTACAAAGACAGCAC 757
||||| || || || ||||| ||| | ||||| || || || || ||||| ||||| ||
Sbjct 646 TTTGATGAAGCAATTGCTGAA-TTGGATACTCTTGGTGAAGAGTCATACAAGGACAGTAC 704
Query 758 TCTCATAATGCAG-TTGCTGAGGGACAATTTAACCCTTTGGACCTCCGATATGCAG 812
| | || |||||| || || | || || | || || ||||| || |||||||||
Sbjct 705 TTTGATTATGCAGCTT-CTTCGTGATAACCTCACTCTCTGGACTTCTGATATGCAG 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57325818725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5