BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10460.1
Length=1066
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940515 jgi|Araly1|940515|scaffold_601059.1 1506 0.0
> Ahg940515 jgi|Araly1|940515|scaffold_601059.1
Length=966
Score = 1506 bits (815), Expect = 0.0
Identities = 919/969 (95%), Gaps = 7/969 (1%)
Strand=Plus/Plus
Query 22 TTCTCGTCACAGGAAGAAAAATGTTCTGTTCCTCGCAGCTCTCACAGCCAATGAATGGCC 81
|||||| | |||||||||||||| |||||||||||||| |||| || |||||||||||||
Sbjct 1 TTCTCGCCGCAGGAAGAAAAATGATCTGTTCCTCGCAGATCTCGCAACCAATGAATGGCC 60
Query 82 TCAAAGACATAGTTGAGACGA-GAAATTTTAAGGCTTGGCTCTTAGATCAGTATGGAGTT 140
|||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TCAAAGACATCGTTGAGAC-ACGAAATTTTAAGGCATGGCTCTTAGATCAGTATGGAGTT 119
Query 141 CTTCATGATGGCAAAAAACCTTACCCCGGTGCTATCTCAACATTGAAAAATCTTGCAACA 200
|||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct 120 CTTCATGATGGCAAAAAACCGTACCCTGGTGCAATCTCAACATTAAAAAATCTTGCAACA 179
Query 201 GCGGGTGCCAAAATTGTGATCATTAGTAATTCTTCTAGACGTGCTTCAACTACAATGGAA 260
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCGGGTGCCAAAATTGTTATCATTAGTAATTCTTCTAGACGTGCTTCAACTACAATGGAA 239
Query 261 AAGTTGAAAGGCCTTGGCTTTGATCCTTCTTTCTTCACCGGAGCTATAACTAGTGGTGAA 320
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 240 AAGTTGAAAGGCCTTGGCTTTGATCCTTCTTTCTTCACTGGAGCTATAACTAGTGGTGAA 299
Query 321 CTAACTCATCAATCTTTGCAGAGGAGAGATGATCCTTGGTTTGCTGCACTGGGAAGGAGG 380
||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 300 CTAACCCATCAATCTTTGCAAAGGAGAGATGATCCTTGGTTCGCTGCACTAGGAAGGAAT 359
Query 381 TGCATTCACATTACTTGGAATGACCGAGGAGCAATCTCTTTGGAGGGTCTAGATCTAAAT 440
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGCATTCACATGACTTGGAATGACCGAGGAGCAATCTCTTTGGAGGGTCTAGATCTAAAT 419
Query 441 GTTGTGGAGAATGTGGAAGAAGCTGACTTTGTTTTAGCGCACGGCACTGAAGCCCTAGGA 500
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 GTTGTGGAGGATGTGGAAGAAGCTGACTTTGTTTTAGCACACGGCACTGAAGCCCTAGGA 479
Query 501 CTTCCTTCAGGCAGTGTATCTCCAAGGACTATTGATGAGCTAGAGAAGATTTTGGAGAAA 560
| |||||||||||||||||||||||||||| | |||||||| ||| ||||||||||||||
Sbjct 480 CATCCTTCAGGCAGTGTATCTCCAAGGACTCTCGATGAGCTTGAGGAGATTTTGGAGAAA 539
Query 561 TCTGCAGCTCGAGGACTTCCCATGATCGTAGCTAATCCAGATTACGTGACTGTTGAAGCA 620
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 540 TCTGCAGCTCGAGGACTTCCCATGATCGTTGCTAATCCAGATTATGTGACTGTTGAAGCA 599
Query 621 AATGTTTTTCATATCATGCCAGGTACACTAGCTTCCAAGTATGAAGAACTGGGAGGAGAA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AATGTTTTTCATATCATGCCAGGTACACTAGCTTCCAAGTATGAAGAACTGGGAGGAGAA 659
Query 681 GTGAAGTCGATGGGAAAACCTCATAAGATGATCTATGAGTCTGCTATAGCAATTGCGGGA 740
||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 GTGAAATGGATGGGAAAACCTCATAAGATGATCTATGAGTCGGCTATAGCAATTGCGGGA 719
Query 741 GTCAATCCGTCTGAGTCTATCGCAGTAGGAGATTCGCTACATCATGATATAAGGGGAGCA 800
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 720 GTCAATCCATCTGAGTCTATCGCAGTAGGAGATTCGCTACATCATGATATAAAGGGTGCA 779
Query 801 AATGTTTCAGGAATTGAATCAATATTCATCACTGGAGGGATTCATGGTAATGAGCTTGGT 860
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AATGTTTCAGGAATTGAGTCAATATTCATCACTGGAGGGATTCATGGTAATGAGCTTGGT 839
Query 861 CTCACTTCTTTTGATGAAACTGCAAGTCTAGACTCAGTCAAGACCCTTACTGCTAAACAC 920
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 840 CTCACTTCTTTTGATGAAACTGCAAGTCTGGACTCAGTGAAGACCCTTACTGCTAAACAC 899
Query 921 AATGCATTCCCAACTTATGTATTATCAGCCTTTAAATGGTAGTTTTCGTTTTGTTGTACA 980
|||||||||||||||||||| ||||| |||||||||||||| ||||| || || |||
Sbjct 900 AATGCATTCCCAACTTATGTTTTATCGGCCTTTAAATGGTAATTTTCATT--GT---ACA 954
Query 981 AATCATATT 989
|||||||||
Sbjct 955 AATCATATT 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39685956597
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5