BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10460.1 Length=1066 Score E Sequences producing significant alignments: (Bits) Value Ahg940515 jgi|Araly1|940515|scaffold_601059.1 1506 0.0 > Ahg940515 jgi|Araly1|940515|scaffold_601059.1 Length=966 Score = 1506 bits (815), Expect = 0.0 Identities = 919/969 (95%), Gaps = 7/969 (1%) Strand=Plus/Plus Query 22 TTCTCGTCACAGGAAGAAAAATGTTCTGTTCCTCGCAGCTCTCACAGCCAATGAATGGCC 81 |||||| | |||||||||||||| |||||||||||||| |||| || ||||||||||||| Sbjct 1 TTCTCGCCGCAGGAAGAAAAATGATCTGTTCCTCGCAGATCTCGCAACCAATGAATGGCC 60 Query 82 TCAAAGACATAGTTGAGACGA-GAAATTTTAAGGCTTGGCTCTTAGATCAGTATGGAGTT 140 |||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||| Sbjct 61 TCAAAGACATCGTTGAGAC-ACGAAATTTTAAGGCATGGCTCTTAGATCAGTATGGAGTT 119 Query 141 CTTCATGATGGCAAAAAACCTTACCCCGGTGCTATCTCAACATTGAAAAATCTTGCAACA 200 |||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||| Sbjct 120 CTTCATGATGGCAAAAAACCGTACCCTGGTGCAATCTCAACATTAAAAAATCTTGCAACA 179 Query 201 GCGGGTGCCAAAATTGTGATCATTAGTAATTCTTCTAGACGTGCTTCAACTACAATGGAA 260 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GCGGGTGCCAAAATTGTTATCATTAGTAATTCTTCTAGACGTGCTTCAACTACAATGGAA 239 Query 261 AAGTTGAAAGGCCTTGGCTTTGATCCTTCTTTCTTCACCGGAGCTATAACTAGTGGTGAA 320 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 240 AAGTTGAAAGGCCTTGGCTTTGATCCTTCTTTCTTCACTGGAGCTATAACTAGTGGTGAA 299 Query 321 CTAACTCATCAATCTTTGCAGAGGAGAGATGATCCTTGGTTTGCTGCACTGGGAAGGAGG 380 ||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||| Sbjct 300 CTAACCCATCAATCTTTGCAAAGGAGAGATGATCCTTGGTTCGCTGCACTAGGAAGGAAT 359 Query 381 TGCATTCACATTACTTGGAATGACCGAGGAGCAATCTCTTTGGAGGGTCTAGATCTAAAT 440 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TGCATTCACATGACTTGGAATGACCGAGGAGCAATCTCTTTGGAGGGTCTAGATCTAAAT 419 Query 441 GTTGTGGAGAATGTGGAAGAAGCTGACTTTGTTTTAGCGCACGGCACTGAAGCCCTAGGA 500 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 420 GTTGTGGAGGATGTGGAAGAAGCTGACTTTGTTTTAGCACACGGCACTGAAGCCCTAGGA 479 Query 501 CTTCCTTCAGGCAGTGTATCTCCAAGGACTATTGATGAGCTAGAGAAGATTTTGGAGAAA 560 | |||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||| Sbjct 480 CATCCTTCAGGCAGTGTATCTCCAAGGACTCTCGATGAGCTTGAGGAGATTTTGGAGAAA 539 Query 561 TCTGCAGCTCGAGGACTTCCCATGATCGTAGCTAATCCAGATTACGTGACTGTTGAAGCA 620 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 540 TCTGCAGCTCGAGGACTTCCCATGATCGTTGCTAATCCAGATTATGTGACTGTTGAAGCA 599 Query 621 AATGTTTTTCATATCATGCCAGGTACACTAGCTTCCAAGTATGAAGAACTGGGAGGAGAA 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 AATGTTTTTCATATCATGCCAGGTACACTAGCTTCCAAGTATGAAGAACTGGGAGGAGAA 659 Query 681 GTGAAGTCGATGGGAAAACCTCATAAGATGATCTATGAGTCTGCTATAGCAATTGCGGGA 740 ||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 660 GTGAAATGGATGGGAAAACCTCATAAGATGATCTATGAGTCGGCTATAGCAATTGCGGGA 719 Query 741 GTCAATCCGTCTGAGTCTATCGCAGTAGGAGATTCGCTACATCATGATATAAGGGGAGCA 800 |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 720 GTCAATCCATCTGAGTCTATCGCAGTAGGAGATTCGCTACATCATGATATAAAGGGTGCA 779 Query 801 AATGTTTCAGGAATTGAATCAATATTCATCACTGGAGGGATTCATGGTAATGAGCTTGGT 860 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 780 AATGTTTCAGGAATTGAGTCAATATTCATCACTGGAGGGATTCATGGTAATGAGCTTGGT 839 Query 861 CTCACTTCTTTTGATGAAACTGCAAGTCTAGACTCAGTCAAGACCCTTACTGCTAAACAC 920 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 840 CTCACTTCTTTTGATGAAACTGCAAGTCTGGACTCAGTGAAGACCCTTACTGCTAAACAC 899 Query 921 AATGCATTCCCAACTTATGTATTATCAGCCTTTAAATGGTAGTTTTCGTTTTGTTGTACA 980 |||||||||||||||||||| ||||| |||||||||||||| ||||| || || ||| Sbjct 900 AATGCATTCCCAACTTATGTTTTATCGGCCTTTAAATGGTAATTTTCATT--GT---ACA 954 Query 981 AATCATATT 989 ||||||||| Sbjct 955 AATCATATT 963 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39685956597 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5