BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10480.3
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940517 jgi|Araly1|940517|scaffold_601061.1 1048 0.0
> Ahg940517 jgi|Araly1|940517|scaffold_601061.1
Length=709
Score = 1048 bits (567), Expect = 0.0
Identities = 684/735 (93%), Gaps = 29/735 (4%)
Strand=Plus/Plus
Query 84 TTCTCGCGTATTCACTTTCCATGGCGGGCTTTCTCTCCGTTGTCCGGCGCGTGTACCTCA 143
||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 4 TTCTCGCTTAGTCACTTTCCATGGCGGGCTTTCTCTCCGTCGTCCGGCGCGTATACCTCA 63
Query 144 CTCTCTACAATTGGATCGTCTTTGCTGGATGGGCTCAGGTTTTGTACTTAGCGATAACGA 203
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 CACTCTACAATTGGATCGTCTTTGCTGGATGGGCTCAGGTTTTGTACTTAGCGATAACGA 123
Query 204 CGTTGAAGGAAACGGGTTATGAGAATGTCTATGACGCCATTGAGAAGCCTCTCCAGCTTG 263
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 124 CGTTGAAGGAAACGGGATATGAAAATGTGTATGACGCCATTGAGAAGCCTCTCCAGCTTG 183
Query 264 CTCAGACTGCCGCCGTTCTCGAGATTCTTCATGGATTAGTAGGTTTGGTCAGATCTCCTG 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CTCAGACTGCCGCCGTTCTCGAGATTCTTCATGGATTAGTAGGTTTGGTCAGATCTCCTG 243
Query 324 TTTCTGCAACTCTGCCACAGATAGGTTCAAGGCTATTTCTCACTTGGGGCATCCTATACA 383
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 244 TTTCTGCAACTCTGCCACAGATAGGTTCAAGGCTATTTCTCACTTGGGGAATCCTATACA 303
Query 384 GTTTTCCAGAGGTCCGATCTCATTTTCTTGTTACGTCGCTGGTCATAAGCTGGTCTATCA 443
||||||||||||||||||||||||||||||||||||| |||||||||| | | |
Sbjct 304 GTTTTCCAGAGGTCCGATCTCATTTTCTTGTTACGTCCCTGGTCATAA----G-C--T-- 354
Query 444 CAGAGTTTCCTATCACAACATGGATTGTTGAAATTATTCGCTACTCATTCTTCGGCTTTA 503
| | | |||| | || ||| | |||||||||||||| ||||| |||||||
Sbjct 355 --G-G--T-CTAT--C-AC--GGA-----G--ATTATTCGCTACTCCTTCTTTGGCTTTA 396
Query 504 AGGAAGCTCTAGGCTTTGCACCTTCATGGCACTTGTGGCTCAGATACAGCAGCTTTTTAT 563
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 397 AGGAAGCTCTAGGCTTTGCGCCTTCATGGCACTTGTGGCTCAGATATAGCAGCTTTTTGT 456
Query 564 TGCTATACCCTACCGGTATCACCAGCGAAGTTGGTCTTATCTACCTTGCCTTACCACACA 623
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 457 TGCTATACCCTACCGGTATCACCAGTGAAGTTGGTCTTATCTACCTTGCCTTACCACACA 516
Query 624 TCAAGACATCGGAGATGTACAGCGTTAGGATGCCTAACATATTGAACTTCTCATTTGACT 683
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||
Sbjct 517 TCAAGACATCGGAGATGTACAGCGTGAGGATGCCTAACACATTGAACTTCTCATTCGACT 576
Query 684 TCTTCTATGCAACGATACTCGTCCTTGCAATCTATGTCCCAGGTAGCCCACACATGTACA 743
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 577 TCTTCTATGCAACGATACTTGTCCTTGCAATCTATGTCCCAGGTAGTCCACACATGTACA 636
Query 744 GGTACATGCTTGGTCAGCGAAAGAGAGCTCTCTCCAAATCCAAGAGGGAATAAAAGAAAA 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 637 GGTACATGCTTGGTCAGCGAAAGAGAGCTCTCTCCAAATCCAAGAGGGAATAAAA-AAA- 694
Query 804 GATTTAGAAAGAGAC 818
| |||||||||||||
Sbjct 695 GCTTTAGAAAGAGAC 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38580392004
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5