BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10490.1
Length=2391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940518 jgi|Araly1|940518|scaffold_601062.1 3321 0.0
> Ahg940518 jgi|Araly1|940518|scaffold_601062.1
Length=2063
Score = 3321 bits (1798), Expect = 0.0
Identities = 1973/2060 (96%), Gaps = 2/2060 (0%)
Strand=Plus/Plus
Query 200 CATTGAATCTGATTAAAATATGGCCCTTTATGGTACATTGCAGTTGTCTCATAGTCTGGG 259
|||||| |||| | ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 3 CATTGACTCTGCTCAAACTATGGCCCTTTATGGTACATTGCAGTTGTCCCATAGTCTGGG 62
Query 260 TTTGTGCAGAAACCAACGGTTTTGTAATCCAGAAAATAGTGCCATGAGAAGGAGGCTGCA 319
||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 63 TTTTTGCAGAAACCAAAGGTGCTATAATCCAGAAAATAGTGCCATGAGAAGGAGGCTGCA 122
Query 320 TATATCAAATGGTCCTCTCTCATTAGGTGTTCCGTTGGGACAACATGGTTTCAGCAACAT 379
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 123 TATTTCAAATGGTCCTCTCTCATTAGGTGTTCCGTTGGGACAACATGGTTTCAGCAATTT 182
Query 380 ATTACTCTCAAATTACCTTCGTAGGCCTATTTGTTCAGTTCCATGCAGAACCACCGCTTT 439
||||||||| ||||||||||||||| |||| |||||| |||||||| |||||||||||
Sbjct 183 ATTACTCTCGGATTACCTTCGTAGGCAAATTTATTCAGTCCCATGCAGGACCACCGCTTT 242
Query 440 TAGGTGTCATTCCTTTTCTGCAAGCGGCAAGGCAATTGAACCTGCTGTTAAAGCTGTCAC 499
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 243 TAGGTGTCATTCCTTTTCTGCAGGAGGCAAGGCAATTGAACCTGCTGTTAAAGCTGTCAC 302
Query 500 CGTGGTGCTAACAAAGTCACACGGGTTGATGCAACAATTCCCTTTTGTATATAAATTGGT 559
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 303 CGTGGTGCTAACAAAGTCACACGGGTTGATACAACAATTCCCTTTTGTATATAAGTTGGT 362
Query 560 TCCAGCTGTTGCTCTTCTTGTTTTCTCCCTGTGGGGTCTAGTGCCTTTTGCTCGCCAAGG 619
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 363 TCCAGCTGTTGCTCTTCTTGTTTTCTCCCTGTGGGGTCTAGTGCCTTTTGTTCGCCAAGG 422
Query 620 AAGAAACATACTACTCAATAAGAATGATAACGGTTGGAAGAAGAGTGGTACGTACCATGT 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AAGAAACATACTACTCAATAAGAATGATAACGGTTGGAAGAAGAGTGGTACGTACCATGT 482
Query 680 TATGACTTCATATGTTCAACCTCTGTTACTATGGTTAGGAGCTCTATTCATCTGCAGGGC 739
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 483 TATGACCTCATATGTTCAACCTCTGCTACTATGGTTAGGAGCTCTATTCATCTGCAGGGC 542
Query 740 ATTAGATCCTGTTGTCCTTCCTACAGAAGCTAGCAAAATTGTGAAGGATCGACTGTTGAA 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 543 ATTAGATCCTGTTGTCCTTCCTACAGAAGCTAGCAAAATTGTGAAGGATCGACTTTTGAA 602
Query 800 TTTTGTGAGGTCATTGTCAACGGTACTTGCATTTGCTTACTGCTTATCCAGTCTTATCCA 859
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 603 TTTTGTGAGATCATTGTCAACGGTACTTGCATTTGCTTACTGCATATCCAGTCTTATCCA 662
Query 860 ACAAACACAAAAGCTATTCTCAGAAACGAGTAATCCGAGCGATACAAGAAATATGGGATT 919
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 ACAAACACAAAAGCTCTTCTCAGAAACGAGTAATCCGAGCGATACAAGAAATATGGGATT 722
Query 920 TCAATTTGCTGGGAAAGCATTGTATTCTGCTGTATGGGTTGCTGCTGTATCACTTTTCAT 979
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 723 TCAATTTGCTGGGAAAGCAGTGTATTCTGCTGTATGGGTTGCTGCTGTGTCACTTTTCAT 782
Query 980 GGAGTTGCTGGGTTTCTCTACACAAAAATGGCTCACTGCTGGAGGTCTTGGGACAGTTTT 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GGAGTTGCTGGGTTTCTCTACACAAAAATGGCTCACTGCTGGAGGTCTTGGGACAGTTTT 842
Query 1040 GATTACTCTTGCTGGCCGAGAGATTTTGACAAACTTTCTTTCAAGTGTTATGATTCATGC 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GATTACTCTTGCTGGCCGAGAGATTTTGACAAACTTTCTTTCAAGTGTTATGATTCATGC 902
Query 1100 AACCCGGCCATTTGTTTTGAATGAGTGGATTCAAACAAAGATAGAAGGTTATGAAGTGTC 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 AACCCGGCCATTTGTTTTGAATGAGTGGATTCAAACAAAGATAGAAGGTTATGAAGTGTC 962
Query 1160 TGGTACTGTGGAGCATGTTGGTTGGTGGTCACCAACAATCATAAGAGGTGAAGACCGCGA 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGGTACTGTGGAGCATGTTGGTTGGTGGTCACCAACAATCATAAGAGGTGAAGACCGCGA 1022
Query 1220 GGCAATTCACATCCCAAACCATAAGTTCACAGTTAATGTCGTGAGAAACCTTACTCAGAA 1279
|||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1023 GGCAATCCACATCCCAAACCATAAGTTCACAGTCAATGTCGTGAGAAATCTTACTCAGAA 1082
Query 1280 AACTCATTGGCGTATTAAAACTCACCTAGCAATCAGTCACTTGGATGTCAACAAAATAAA 1339
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 AACTCATTGGCGTATCAAAACTCACCTAGCAATCAGTCACTTGGATGTCAACAAAATAAA 1142
Query 1340 TAATATTGTAGCTGACATGCGGAAAGTGTTGGCCAAGAATCCTATGGTTGAGCAGCAGAG 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TAATATTGTAGCTGACATGCGGAAAGTGTTGGCCAAGAATCCTATGGTTGAGCAGCAGAG 1202
Query 1400 GTTACATAGAAGGGTATTCTTGGAGAATGTCATTCCAGAAAATCAGGCCCTCTCGATACT 1459
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 GTTACATCGAAGGGTATTCTTGGAGAATGTCATTCCAGAAAATCAGGCCCTCTCGATACT 1262
Query 1460 GATCTCTTGCTTTGTGAAGACGTCTCATCACGAAGAATATTTGGGTGTAAAGGAAGCTAT 1519
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1263 GATCTCTTGCTTTGTGAAGACGTCTCATCACGAAGAATACTTGGGTGTAAAGGAAGCTAT 1322
Query 1520 ATTGTTGGACCTTCTTAGAGTCATAAGCCACCACCGAGCTCGTCTAGCTACACCAATCCG 1579
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1323 ATTGTTGGACCTTCTTAGAGTCATAAGCCACCACAGAGCTCGTCTAGCTACACCAATCCG 1382
Query 1580 TACAATCCGTAAGATGTACACAGA-GACTGACGTGGAAAACACACCATTTGGGGAATCGA 1638
|||||||||||||||||||||||| | ||||| |||||||| |||||||||| |||||||
Sbjct 1383 TACAATCCGTAAGATGTACACAGACG-CTGACATGGAAAACGCACCATTTGGTGAATCGA 1441
Query 1639 TGTACGGAGGTGTTACTTCTCGGCGGCCTTTGATGCTAATTGAACCCGCTTACAAAATCA 1698
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 TGTATGGAGGTGTTACTTCTCGGCGGCCTTTGATGCTAATTGAACCCGCTTACAAAATCA 1501
Query 1699 ATGGAGAAGACAAATCAAAATCTCAAAACCGTGCAGCAAAACCAACCGCAGAGCAAGAAA 1758
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1502 ATGGAGAAGACAAATCAAAATCTCAAAACCGTGCATCAAAACCAACCGCAGAGCAAGAAA 1561
Query 1759 ACAAGGGCTCGAATCCAAAGTCAAAAGAAACGTCTTCTCCTGATCTAAAGGCGAATGTGA 1818
||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1562 ACAAGGGTTCGAGTCCAAAGTCAAAAGAAACGTCTTCACCTGATCTAAAGGCGAATGTAA 1621
Query 1819 AAGTTGGAGAATCCCCTGTTTCTGATACCAACAAAGTACCTGAAGAAACAGTAGCAAAGC 1878
|||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1622 AAGTTGGAGAATCCTCGGTTTCTGATACCAACAAAGTACCTGAAGAAACGGTAGCAAAGC 1681
Query 1879 CAGTAATCAAAGCGGTCTCAAAACCGCCCACCCCAAAGGATACAGAAACATCAGGAACTG 1938
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 CAGTAATCAAAGCGGTCTCTAAACCGCCCACCCCAAAGGATACAGAAACATCAGGAACTG 1741
Query 1939 AGAAACCAAAGGCCAAGAGAAGTGGTGGCACAATAAAATCAACAAAGACAGATGAAACAG 1998
|||||||||||||||||||||||| | |||||| ||| ||| ||||| | ||||||||||
Sbjct 1742 AGAAACCAAAGGCCAAGAGAAGTGTTAGCACAACAAAGTCACCAAAGTCGGATGAAACAG 1801
Query 1999 ATAGTTCAACATCATCAGCGTCTAGATCAACTTTAGAAGAGAATATAGTACTGGGTGTTG 2058
||| ||| |||||||| | || |||||| |||| |||||||| ||||||||||||||||
Sbjct 1802 ATACTTCGTCATCATCATCATCGAGATCAGCTTTGGAAGAGAACATAGTACTGGGTGTTG 1861
Query 2059 CACTAGAAGGCTCAAAGAGAACACTTCCAATCGAAGAAGAGATACATTCTCCTCCCATGG 2118
|||| || |||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1862 CACTGGAGGGCTCAAAGAGAACACTTCCAATCGAAGAAGAGATACATTCTTCTTCCATGG 1921
Query 2119 AAACAGATGCTAAAGAACTCACGGGAGCTCGCAGATCCGGTGGAAATGGACCATTGGTGG 2178
|||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |
Sbjct 1922 AAACAGATGCCAAAGAACTCACTGGTGCTCGCAGATCCGGTGGAAACGGACCATTGGTTG 1981
Query 2179 CTGATAAGGAACAGAAAGATAGCCAATCACAACCAAACTCAGGTGCTTCAACCGAGCCGT 2238
|||||||||| ||||||||| ||||||| |||||||||||||||||||| | ||||| ||
Sbjct 1982 CTGATAAGGAGCAGAAAGATGGCCAATCTCAACCAAACTCAGGTGCTTCGAGCGAGCAGT 2041
Query 2239 GAGATGAAATTCAATGAGTT 2258
|| |||||||||||||||||
Sbjct 2042 GATATGAAATTCAATGAGTT 2061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90083429425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5