BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10500.1 Length=2704 Score E Sequences producing significant alignments: (Bits) Value Ahg487882 jgi|Araly1|487882|fgenesh2_kg.6__1016__AT5G10500.1 3880 0.0 > Ahg487882 jgi|Araly1|487882|fgenesh2_kg.6__1016__AT5G10500.1 Length=2681 Score = 3880 bits (2101), Expect = 0.0 Identities = 2511/2703 (93%), Gaps = 51/2703 (2%) Strand=Plus/Plus Query 29 AGATGAGATTTTGTTCAATTG-ATTGAAAtttttttCAAGAAAAAGATTAGAGAATAAAG 87 |||||||||||||||||| || |||| || || ||||||| |||||||||| || | Sbjct 1 AGATGAGATTTTGTTCAA-TGTATTG-AA-----TT-AAGAAAAGGATTAGAGAACAAGG 52 Query 88 ATGCTACGAAGAGCTGCGAGCAATGCGTACTCCTGGTGGTGGGCAAGCCACGTTCGAACC 147 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 53 ATGCTACGAAGAGCTGCGAGCAATGCGTACTCATGGTGGTGGGCAAGCCACGTTCGAACC 112 Query 148 AAACAATCCAAATGGCTTGAAGAAAACCTTCAAGATATCGAGGAGAAGGTGGAATATGCA 207 ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| Sbjct 113 AAACAATCCAAATGGCTCGAAGAAAACCTTCAAGATATCGAGGATAAGGTGCAATATGCA 172 Query 208 CTTAAGCTTTTGGAAGATGAAGGTGATTCATTTGCTAAGCGTGCAGAAATGTATTACAAG 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 173 CTTAAGCTTTTGGAAGATGAAGGTGATTCATTTGCTAAGCGTGCAGAAATGTATTACAAG 232 Query 268 AGAAGGCCTGAATTGATAAGTTTTGTAGAAGAATCTTTCAAGGCTTATCGTGCTTTAGCA 327 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 233 AGAAGACCTGAATTGATAAGTTTTGTGGAAGAATCTTTCAAGGCTTATCGTGCTTTAGCA 292 Query 328 GAGCGGTATGATCATATCTCTAAAGAGCTTCAAAACGCCAACACCACAATTGCATCTGTT 387 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 293 GAGCGGTATGATCATATCTCTAAAGAGCTTCAAAACGCTAACACCACAATTGCATCTGTT 352 Query 388 TTTCCTGACCAAGTCCCTGAGTTTGCCATGAACGAAGATGACGACGATGATGCTCCTGTC 447 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| Sbjct 353 TTTCCTGACCAAGTCCCTGAGTTTGCTATGAACGAAGACGACGACGATGATGCTCATGTC 412 Query 448 TCACCTAGACACCATAAAAATAAGACATCAAATAAGAATGTTCCAAAAGTTCCTGATTTG 507 |||||| | ||||||||| ||| |||||||| ||||||||||||| |||||||| ||| Sbjct 413 GCACCTAAAAACCATAAAACTAACACATCAAACCAGAATGTTCCAAAGGTTCCTGACTTG 472 Query 508 CCCATAAAAGACCCTGAGGCTGCCAAGAAGATGTTCATGTCAAGGAAAGCTATTCAAGAA 567 || |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 473 CCAATAAAAAACTCTGAGGCTGCCAAGAAGATTTTCATGTCAAGGAAAGCTATTCAAGAA 532 Query 568 CAGAATGCCTCGTCCGTTGTTAA-CAAGTCCGGGCTGAGTAAAACCGAGGCGGTGGAAGA 626 ||||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||| Sbjct 533 CAGAATGCCTCGTCCGTTG-TAATCAAGTCCGGGCTAAGTAAAACCGAGGCCGTGGAAGA 591 Query 627 GATTGACAAGTTGCAGAAAGAGATTCTTGTTTTGCAAACTGAGAAAGAGTTTGTGAAGAC 686 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 592 GATTGATAAGTTGCAGAAAGAGATTCTTGTTTTGCAGACTGAGAAAGAGTTTGTGAAGAC 651 Query 687 TTCTTATGAGAATGGACTTGCAAAGTATTGGGAGATTGAGAAATGTATCATGGAGAAACA 746 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 TTCTTATGAGAATGGACTTGCAAAGTATTGGGAGATTGAGAAATGTATCATGGAGAAACA 711 Query 747 AGGGAAAGTTTCTAGTTTGCAAGACGAGTTTGACGAAGGTGCTGTTGTTATAGAAGATAA 806 ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 712 AGGGAAAGTTTGTAGTTTGCAAGACGAGTTTGACGAAGGTGCTATTGTCATAGAAGATAA 771 Query 807 AGAAGCTCAGATAT-TGATGTCTACCACAGCTCTCAAATCATGCCAAGAGAAACTAGAAG 865 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 AGAAGCTCAGAT-TCTGATGTCTACCACAGCTCTCAAATCATGCCAAGAGAAACTAGAAG 830 Query 866 AGCTGAGAGATAAACAGGAACAA--AATGTGAAAGAAGTAGATGTTTCAAGAAAACAAAT 923 ||||||||||||||||| || || ||||||||||||||||||||| |||||||||| || Sbjct 831 AGCTGAGAGATAAACAG-AA-AAGTAATGTGAAAGAAGTAGATGTTACAAGAAAACAGAT 888 Query 924 CAGTGAATCAACAGAGGAATTTGGTAATCTTTCTGATGCATTGCTTGGTGATGGGAAAGG 983 |||||||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||| | Sbjct 889 CAGTGAATCAACAGAGGAATTTAGTAATATCTCTGATGCATTACTTGGTGATGGAAAAAG 948 Query 984 AAACCATGAGATATACAGCGAGAAAGAGAAGTTGGAGTCATTAGGAGAAAAGGTAAATGA 1043 |||||| || |||||||||||||| |||||| | | |||||||||||||||||| || | Sbjct 949 AAACCAGGAAATATACAGCGAGAAGGAGAAGCTAAAATCATTAGGAGAAAAGGTATATAA 1008 Query 1044 TGAGTTTGATGACTCTGAGGCTAAGTCATGTCTTACTATTCCAGACGTGGCTGATAAAAT 1103 ||||||||||||||||||||||||||||||||||| || |||| ||||||||||| || Sbjct 1009 AGAGTTTGATGACTCTGAGGCTAAGTCATGTCTTACCATAACAGATGTGGCTGATAAGAT 1068 Query 1104 CGATGAGCTTGTGAATGATGTGATCAATTTGGAGAATTTGTTCT-CATCTCAAGCAGCTT 1162 ||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| Sbjct 1069 CGATGAGCTTGTGAATGATGTGATCAATTTGGAGAGCTTGTT-TACATCTCAAGCAGCTT 1127 Query 1163 TAATACACAGACTAAGAGAAGAAATCGATGATCTCAAAGCACAGATTAGAGCTCTACAAA 1222 |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1128 TAATACACAGGTTAAGAGAAGAAATCGATGATCTCAAAGCACAGATAAGAGCTCTACAAA 1187 Query 1223 AAGAAAACAATTCATCTCAAACTGATGACAATATGGACATGGGAAAGAAGTTGAAAGAGA 1282 |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||| Sbjct 1188 AAGAAAACAATTCATCTCAAACTGATGATAATATGAACATGAGAAAGAAGTTGAAAGAGA 1247 Query 1283 TGGAGGAAAAGGTGAATGGTGTTAAAGATATAGACCAAGAAGTTGAAGAAAAGAGTGACA 1342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1248 TGGAGGAAAAGGTGAATGGTGTTAAAGATATAGACCAAGAAGTTGAAGAAAAGAGTGACA 1307 Query 1343 ACATTGATAAACATCTTACGAGAGCACATATGAAACTAAGTTTCTTATCCAAGAGATTAA 1402 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1308 ACATTGACAAACATCTTACGAGAGCACATATGAAACTAAGTTTCTTATCCAAGAGATTAA 1367 Query 1403 AAAGCTTGACGCAAGAAGG-G--GAAGATGAAGAATTAAAGGCTACTAATGTGCCAATTC 1459 ||||||||| ||||||||| | ||||| ||||||||||| ||||||||||||||||||| Sbjct 1368 AAAGCTTGAAGCAAGAAGGAGAAGAAGAAGAAGAATTAAAAGCTACTAATGTGCCAATTC 1427 Query 1460 AAGATATAGGATCTTTGACTGATACAAAGTTTCCAGAGGAAAACATTGATGATACCGTTG 1519 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1428 AAGATATAGGATCTTTGACTGATACAAAGTTTCCAGAGGAAAACATTGATGATTCAGTTG 1487 Query 1520 TGTCTGAAAATGCTTTAGACATTAAATCAGCATCTGAGGTGGTTTTTGCTGAAAAGGATC 1579 ||||||||||||||||| |||||||||||||||||| | ||| |||||||||| |||| Sbjct 1488 CGTCTGAAAATGCTTTAGGCATTAAATCAGCATCTGAAATAGTTATTGCTGAAAAAGATC 1547 Query 1580 TTTCCGATGAAGTTAACCAAGAAGAGGCTATTGAAACTAAAACAAAGGAAGCTTCGTTAT 1639 || | |||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1548 TTACAAATGAAGTTAACCAAGAAGAGACTATTGAAACTAAAACAAAGGAAGCTTCATTAT 1607 Query 1640 CTGATTTAGAGAAACACATCTCATCACCAAAATCAGACATCATAACAACACAAGAGTCAT 1699 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1608 ATGATTTAGAGAAACGTATCTCATCACCAAAATCAGACATCATAACAACACAAGAGTCAT 1667 Query 1700 CAGATGA-GTTATTCTTGCAGAAGTTGCTCGCACATGGGATCGAAGGCAGAGAAAAACAT 1758 ||||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1668 CAGATGATGC-ATTCTTGCAGAAGTTCCTCGCACATGGGATCGAAGGCAGAGAGAAACAT 1726 Query 1759 TTGTTAA-CTGAATACACCAAAGTACTTCGGAACTATAAAGAAGTGAAGAAGTTGCTACA 1817 ||||||| | || ||||| | |||||||||||||||||||||||| |||||| ||||||| Sbjct 1727 TTGTTAAAC-GAGTACACTAGAGTACTTCGGAACTATAAAGAAGTAAAGAAGATGCTACA 1785 Query 1818 TGAAACTGAAACTAAACTGAAAAATGTAAACACCTTGAAAGATGAA--GG-CA-AG---- 1869 |||||| ||||| ||||| || | |||||||||||||||||||||| || || || Sbjct 1786 TGAAACAGAAACAAAACTCAAGAGTGTAAACACCTTGAAAGATGAACAGGTCAGAGCCAA 1845 Query 1870 G-ATCAACAACGGGGCCAATTGTTCATGCTAATTTGCAGAGAAGATAATAACGCCACAAA 1928 | |||||| ||||| ||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 1846 GGATCAACGACGGGACCAGTTGTTCATGCTAATTTGCAGAGAAGATAA---CGCCATAAA 1902 Query 1929 TGCAATAACTGGTCAAAAACAGAGGAT-GTCACCAAATGAAGAGCAATT-GGGAGCACGA 1986 |||||| ||||||||||| ||||| || |||||||||| |||||||||| ||| ||||| Sbjct 1903 TGCAATGACTGGTCAAAAGCAGAG-ATTGTCACCAAATAAAGAGCAATTCGGG-GCACGC 1960 Query 1987 GTTGATGCATTACTAAGCGAGAACTTGAACTTATTGGTGAGGTTTAGCAACTCTTTTGGC 2046 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1961 GTTGATGCATTACTAAGCGAGAACTTGAACTTATTGGTGAGGTTTAGCAACTCTTTTGGC 2020 Query 2047 AAAATACAACAGTTTGACACAGGGATCAAAGACTTACATGGTGAGATGTTGAAGATCATA 2106 | |||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||| Sbjct 2021 CAGATACAACAATTTGACACAGGGATCAAAGACTTACATGTTGAGATATTGAATATCATA 2080 Query 2107 AAACAAAAGAATCAAGATGGAGGAAAAAACACTCTGAGATCAAATGTTCGTCCCATATAC 2166 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 2081 AAACAAAAGAATCAAGATGGAGGAAAGAACACTCTAAGATCAAATGTTCGTCCCATATAC 2140 Query 2167 AAACACCTCAGCGAGATTCGCACCGAAATGACTGTTTGGTTAGAGAAGAGTTTGCTTTTA 2226 ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| Sbjct 2141 AAACACCTCAGCGAGATCCACAACGAAATGACTGTTTGGTTAGAGAAGAGTTTGCTTTTA 2200 Query 2227 AAAGAAGAAATCAACATCAGAGCTTCAACTTTGAGTGACATACACAATGAGATAACAGAA 2286 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 2201 AAAGAAGAAATCAACATCAGAGCTTCGACTTTGAGTGACATACAAAATGAGATAACAGAA 2260 Query 2287 GCTCTCAAAACAGATTCTGAAGACTCTGAAATAAAATTTACAATCTACCAAGGAGCCAAA 2346 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| Sbjct 2261 GCTCTCAAAACAGATTCTGAAGACTCTGAAATGAAACTTACAATCTACCAAGGAGCTAAA 2320 Query 2347 TTCGAAGGCGAGGTTTCAAACATGAAGAAGGAAAACAATAGGATTGCAGAAGAGTTGCAA 2406 || |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| Sbjct 2321 TTTGAAGGCGAGGTTTCGAACATGAAGAAGGAGAACAATAGGATAGCAGAAGAGTTGCAA 2380 Query 2407 ACAGGTTTAGATCAAGTTACAAAACTGATGAAGGATGCTGATACAACACTCGAGAAACTA 2466 ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct 2381 ACAGGTTTAGAACAAGTTACAAAACTGATGAAGGATGCTGATACGACACTAGAGAAATTG 2440 Query 2467 AGTGAGGAGTTTTCACTTTCTGAATCAAACACACAGTCTTCGCAAGATCGTT---CTCGT 2523 |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| Sbjct 2441 AGTGAGGAGTTTTCACTTTCCGAATCAAACGTACAGTCTTCGCAAGATCGCAAAACTCGT 2500 Query 2524 ATTCCTTTGAGGTCATTTATCTTCGATAGAAAACCGAAGAAGCAAAGACTATCCCTTTTC 2583 |||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| Sbjct 2501 ATTCCTTTGAGGTCATTTATCTTCGATATAAAACCGAAGAAACAAAGACTATCTCTTTTC 2560 Query 2584 TCTTGTATTCAACCTTCATTGTCTAAGATGAAGAAGCCTGCTGGTTCATAGAAAACTTTT 2643 |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 2561 TCTTGTATTCAACCTTCATTGTCTAAAATGAAGAAGCCTGCTGGTTTATAGAAAACTTTT 2620 Query 2644 ACATATCTTTCCATGTACTACTACTACATATCAATT----GTGTTAATGGATTTAAATCT 2699 |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2621 ACAT--CTTTCCATGTACTACTACTACATATCAATTTAATGTGTTAATGGATTTAAATCT 2678 Query 2700 TTT 2702 ||| Sbjct 2679 TTT 2681 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102005676110 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5