BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10500.1
Length=2704
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487882 jgi|Araly1|487882|fgenesh2_kg.6__1016__AT5G10500.1 3880 0.0
> Ahg487882 jgi|Araly1|487882|fgenesh2_kg.6__1016__AT5G10500.1
Length=2681
Score = 3880 bits (2101), Expect = 0.0
Identities = 2511/2703 (93%), Gaps = 51/2703 (2%)
Strand=Plus/Plus
Query 29 AGATGAGATTTTGTTCAATTG-ATTGAAAtttttttCAAGAAAAAGATTAGAGAATAAAG 87
|||||||||||||||||| || |||| || || ||||||| |||||||||| || |
Sbjct 1 AGATGAGATTTTGTTCAA-TGTATTG-AA-----TT-AAGAAAAGGATTAGAGAACAAGG 52
Query 88 ATGCTACGAAGAGCTGCGAGCAATGCGTACTCCTGGTGGTGGGCAAGCCACGTTCGAACC 147
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 53 ATGCTACGAAGAGCTGCGAGCAATGCGTACTCATGGTGGTGGGCAAGCCACGTTCGAACC 112
Query 148 AAACAATCCAAATGGCTTGAAGAAAACCTTCAAGATATCGAGGAGAAGGTGGAATATGCA 207
||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 113 AAACAATCCAAATGGCTCGAAGAAAACCTTCAAGATATCGAGGATAAGGTGCAATATGCA 172
Query 208 CTTAAGCTTTTGGAAGATGAAGGTGATTCATTTGCTAAGCGTGCAGAAATGTATTACAAG 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 CTTAAGCTTTTGGAAGATGAAGGTGATTCATTTGCTAAGCGTGCAGAAATGTATTACAAG 232
Query 268 AGAAGGCCTGAATTGATAAGTTTTGTAGAAGAATCTTTCAAGGCTTATCGTGCTTTAGCA 327
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 233 AGAAGACCTGAATTGATAAGTTTTGTGGAAGAATCTTTCAAGGCTTATCGTGCTTTAGCA 292
Query 328 GAGCGGTATGATCATATCTCTAAAGAGCTTCAAAACGCCAACACCACAATTGCATCTGTT 387
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 293 GAGCGGTATGATCATATCTCTAAAGAGCTTCAAAACGCTAACACCACAATTGCATCTGTT 352
Query 388 TTTCCTGACCAAGTCCCTGAGTTTGCCATGAACGAAGATGACGACGATGATGCTCCTGTC 447
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||
Sbjct 353 TTTCCTGACCAAGTCCCTGAGTTTGCTATGAACGAAGACGACGACGATGATGCTCATGTC 412
Query 448 TCACCTAGACACCATAAAAATAAGACATCAAATAAGAATGTTCCAAAAGTTCCTGATTTG 507
|||||| | ||||||||| ||| |||||||| ||||||||||||| |||||||| |||
Sbjct 413 GCACCTAAAAACCATAAAACTAACACATCAAACCAGAATGTTCCAAAGGTTCCTGACTTG 472
Query 508 CCCATAAAAGACCCTGAGGCTGCCAAGAAGATGTTCATGTCAAGGAAAGCTATTCAAGAA 567
|| |||||| || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 473 CCAATAAAAAACTCTGAGGCTGCCAAGAAGATTTTCATGTCAAGGAAAGCTATTCAAGAA 532
Query 568 CAGAATGCCTCGTCCGTTGTTAA-CAAGTCCGGGCTGAGTAAAACCGAGGCGGTGGAAGA 626
||||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||
Sbjct 533 CAGAATGCCTCGTCCGTTG-TAATCAAGTCCGGGCTAAGTAAAACCGAGGCCGTGGAAGA 591
Query 627 GATTGACAAGTTGCAGAAAGAGATTCTTGTTTTGCAAACTGAGAAAGAGTTTGTGAAGAC 686
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 592 GATTGATAAGTTGCAGAAAGAGATTCTTGTTTTGCAGACTGAGAAAGAGTTTGTGAAGAC 651
Query 687 TTCTTATGAGAATGGACTTGCAAAGTATTGGGAGATTGAGAAATGTATCATGGAGAAACA 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTCTTATGAGAATGGACTTGCAAAGTATTGGGAGATTGAGAAATGTATCATGGAGAAACA 711
Query 747 AGGGAAAGTTTCTAGTTTGCAAGACGAGTTTGACGAAGGTGCTGTTGTTATAGAAGATAA 806
||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 712 AGGGAAAGTTTGTAGTTTGCAAGACGAGTTTGACGAAGGTGCTATTGTCATAGAAGATAA 771
Query 807 AGAAGCTCAGATAT-TGATGTCTACCACAGCTCTCAAATCATGCCAAGAGAAACTAGAAG 865
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AGAAGCTCAGAT-TCTGATGTCTACCACAGCTCTCAAATCATGCCAAGAGAAACTAGAAG 830
Query 866 AGCTGAGAGATAAACAGGAACAA--AATGTGAAAGAAGTAGATGTTTCAAGAAAACAAAT 923
||||||||||||||||| || || ||||||||||||||||||||| |||||||||| ||
Sbjct 831 AGCTGAGAGATAAACAG-AA-AAGTAATGTGAAAGAAGTAGATGTTACAAGAAAACAGAT 888
Query 924 CAGTGAATCAACAGAGGAATTTGGTAATCTTTCTGATGCATTGCTTGGTGATGGGAAAGG 983
|||||||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||| |
Sbjct 889 CAGTGAATCAACAGAGGAATTTAGTAATATCTCTGATGCATTACTTGGTGATGGAAAAAG 948
Query 984 AAACCATGAGATATACAGCGAGAAAGAGAAGTTGGAGTCATTAGGAGAAAAGGTAAATGA 1043
|||||| || |||||||||||||| |||||| | | |||||||||||||||||| || |
Sbjct 949 AAACCAGGAAATATACAGCGAGAAGGAGAAGCTAAAATCATTAGGAGAAAAGGTATATAA 1008
Query 1044 TGAGTTTGATGACTCTGAGGCTAAGTCATGTCTTACTATTCCAGACGTGGCTGATAAAAT 1103
||||||||||||||||||||||||||||||||||| || |||| ||||||||||| ||
Sbjct 1009 AGAGTTTGATGACTCTGAGGCTAAGTCATGTCTTACCATAACAGATGTGGCTGATAAGAT 1068
Query 1104 CGATGAGCTTGTGAATGATGTGATCAATTTGGAGAATTTGTTCT-CATCTCAAGCAGCTT 1162
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 1069 CGATGAGCTTGTGAATGATGTGATCAATTTGGAGAGCTTGTT-TACATCTCAAGCAGCTT 1127
Query 1163 TAATACACAGACTAAGAGAAGAAATCGATGATCTCAAAGCACAGATTAGAGCTCTACAAA 1222
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1128 TAATACACAGGTTAAGAGAAGAAATCGATGATCTCAAAGCACAGATAAGAGCTCTACAAA 1187
Query 1223 AAGAAAACAATTCATCTCAAACTGATGACAATATGGACATGGGAAAGAAGTTGAAAGAGA 1282
|||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct 1188 AAGAAAACAATTCATCTCAAACTGATGATAATATGAACATGAGAAAGAAGTTGAAAGAGA 1247
Query 1283 TGGAGGAAAAGGTGAATGGTGTTAAAGATATAGACCAAGAAGTTGAAGAAAAGAGTGACA 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TGGAGGAAAAGGTGAATGGTGTTAAAGATATAGACCAAGAAGTTGAAGAAAAGAGTGACA 1307
Query 1343 ACATTGATAAACATCTTACGAGAGCACATATGAAACTAAGTTTCTTATCCAAGAGATTAA 1402
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 ACATTGACAAACATCTTACGAGAGCACATATGAAACTAAGTTTCTTATCCAAGAGATTAA 1367
Query 1403 AAAGCTTGACGCAAGAAGG-G--GAAGATGAAGAATTAAAGGCTACTAATGTGCCAATTC 1459
||||||||| ||||||||| | ||||| ||||||||||| |||||||||||||||||||
Sbjct 1368 AAAGCTTGAAGCAAGAAGGAGAAGAAGAAGAAGAATTAAAAGCTACTAATGTGCCAATTC 1427
Query 1460 AAGATATAGGATCTTTGACTGATACAAAGTTTCCAGAGGAAAACATTGATGATACCGTTG 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1428 AAGATATAGGATCTTTGACTGATACAAAGTTTCCAGAGGAAAACATTGATGATTCAGTTG 1487
Query 1520 TGTCTGAAAATGCTTTAGACATTAAATCAGCATCTGAGGTGGTTTTTGCTGAAAAGGATC 1579
||||||||||||||||| |||||||||||||||||| | ||| |||||||||| ||||
Sbjct 1488 CGTCTGAAAATGCTTTAGGCATTAAATCAGCATCTGAAATAGTTATTGCTGAAAAAGATC 1547
Query 1580 TTTCCGATGAAGTTAACCAAGAAGAGGCTATTGAAACTAAAACAAAGGAAGCTTCGTTAT 1639
|| | |||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1548 TTACAAATGAAGTTAACCAAGAAGAGACTATTGAAACTAAAACAAAGGAAGCTTCATTAT 1607
Query 1640 CTGATTTAGAGAAACACATCTCATCACCAAAATCAGACATCATAACAACACAAGAGTCAT 1699
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 ATGATTTAGAGAAACGTATCTCATCACCAAAATCAGACATCATAACAACACAAGAGTCAT 1667
Query 1700 CAGATGA-GTTATTCTTGCAGAAGTTGCTCGCACATGGGATCGAAGGCAGAGAAAAACAT 1758
||||||| | ||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1668 CAGATGATGC-ATTCTTGCAGAAGTTCCTCGCACATGGGATCGAAGGCAGAGAGAAACAT 1726
Query 1759 TTGTTAA-CTGAATACACCAAAGTACTTCGGAACTATAAAGAAGTGAAGAAGTTGCTACA 1817
||||||| | || ||||| | |||||||||||||||||||||||| |||||| |||||||
Sbjct 1727 TTGTTAAAC-GAGTACACTAGAGTACTTCGGAACTATAAAGAAGTAAAGAAGATGCTACA 1785
Query 1818 TGAAACTGAAACTAAACTGAAAAATGTAAACACCTTGAAAGATGAA--GG-CA-AG---- 1869
|||||| ||||| ||||| || | |||||||||||||||||||||| || || ||
Sbjct 1786 TGAAACAGAAACAAAACTCAAGAGTGTAAACACCTTGAAAGATGAACAGGTCAGAGCCAA 1845
Query 1870 G-ATCAACAACGGGGCCAATTGTTCATGCTAATTTGCAGAGAAGATAATAACGCCACAAA 1928
| |||||| ||||| ||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 1846 GGATCAACGACGGGACCAGTTGTTCATGCTAATTTGCAGAGAAGATAA---CGCCATAAA 1902
Query 1929 TGCAATAACTGGTCAAAAACAGAGGAT-GTCACCAAATGAAGAGCAATT-GGGAGCACGA 1986
|||||| ||||||||||| ||||| || |||||||||| |||||||||| ||| |||||
Sbjct 1903 TGCAATGACTGGTCAAAAGCAGAG-ATTGTCACCAAATAAAGAGCAATTCGGG-GCACGC 1960
Query 1987 GTTGATGCATTACTAAGCGAGAACTTGAACTTATTGGTGAGGTTTAGCAACTCTTTTGGC 2046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 GTTGATGCATTACTAAGCGAGAACTTGAACTTATTGGTGAGGTTTAGCAACTCTTTTGGC 2020
Query 2047 AAAATACAACAGTTTGACACAGGGATCAAAGACTTACATGGTGAGATGTTGAAGATCATA 2106
| |||||||| |||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 2021 CAGATACAACAATTTGACACAGGGATCAAAGACTTACATGTTGAGATATTGAATATCATA 2080
Query 2107 AAACAAAAGAATCAAGATGGAGGAAAAAACACTCTGAGATCAAATGTTCGTCCCATATAC 2166
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2081 AAACAAAAGAATCAAGATGGAGGAAAGAACACTCTAAGATCAAATGTTCGTCCCATATAC 2140
Query 2167 AAACACCTCAGCGAGATTCGCACCGAAATGACTGTTTGGTTAGAGAAGAGTTTGCTTTTA 2226
||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 2141 AAACACCTCAGCGAGATCCACAACGAAATGACTGTTTGGTTAGAGAAGAGTTTGCTTTTA 2200
Query 2227 AAAGAAGAAATCAACATCAGAGCTTCAACTTTGAGTGACATACACAATGAGATAACAGAA 2286
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2201 AAAGAAGAAATCAACATCAGAGCTTCGACTTTGAGTGACATACAAAATGAGATAACAGAA 2260
Query 2287 GCTCTCAAAACAGATTCTGAAGACTCTGAAATAAAATTTACAATCTACCAAGGAGCCAAA 2346
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 2261 GCTCTCAAAACAGATTCTGAAGACTCTGAAATGAAACTTACAATCTACCAAGGAGCTAAA 2320
Query 2347 TTCGAAGGCGAGGTTTCAAACATGAAGAAGGAAAACAATAGGATTGCAGAAGAGTTGCAA 2406
|| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2321 TTTGAAGGCGAGGTTTCGAACATGAAGAAGGAGAACAATAGGATAGCAGAAGAGTTGCAA 2380
Query 2407 ACAGGTTTAGATCAAGTTACAAAACTGATGAAGGATGCTGATACAACACTCGAGAAACTA 2466
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 2381 ACAGGTTTAGAACAAGTTACAAAACTGATGAAGGATGCTGATACGACACTAGAGAAATTG 2440
Query 2467 AGTGAGGAGTTTTCACTTTCTGAATCAAACACACAGTCTTCGCAAGATCGTT---CTCGT 2523
|||||||||||||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct 2441 AGTGAGGAGTTTTCACTTTCCGAATCAAACGTACAGTCTTCGCAAGATCGCAAAACTCGT 2500
Query 2524 ATTCCTTTGAGGTCATTTATCTTCGATAGAAAACCGAAGAAGCAAAGACTATCCCTTTTC 2583
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 2501 ATTCCTTTGAGGTCATTTATCTTCGATATAAAACCGAAGAAACAAAGACTATCTCTTTTC 2560
Query 2584 TCTTGTATTCAACCTTCATTGTCTAAGATGAAGAAGCCTGCTGGTTCATAGAAAACTTTT 2643
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 2561 TCTTGTATTCAACCTTCATTGTCTAAAATGAAGAAGCCTGCTGGTTTATAGAAAACTTTT 2620
Query 2644 ACATATCTTTCCATGTACTACTACTACATATCAATT----GTGTTAATGGATTTAAATCT 2699
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2621 ACAT--CTTTCCATGTACTACTACTACATATCAATTTAATGTGTTAATGGATTTAAATCT 2678
Query 2700 TTT 2702
|||
Sbjct 2679 TTT 2681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102005676110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5