BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10510.3
Length=2471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940520 jgi|Araly1|940520|scaffold_601064.1 1317 0.0
Ahg918350 jgi|Araly1|918350|Al_scaffold_0008_3101 405 8e-112
Ahg923594 jgi|Araly1|923594|scaffold_104875.1 268 1e-70
> Ahg940520 jgi|Araly1|940520|scaffold_601064.1
Length=1772
Score = 1317 bits (713), Expect = 0.0
Identities = 819/866 (95%), Gaps = 24/866 (3%)
Strand=Plus/Plus
Query 1436 GTGGATATGACAAAGAAGATAAGGCAGCTCGAGCTTACGATTTAGCAGCTCTGAAATACT 1495
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 928 GTGGATATGACAAAGAAGATAAGGCAGCTCGAGCTTACGATTTAGCGGCTCTTAAATACT 987
Query 1496 GGAATGCTACTGCTACCACCAATTTCCCTATTACGAATTACTCGAAAGAAGTGGAGGAAA 1555
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GGAATGCTACTGCTACTACCAATTTCCCTATTACGAATTACTCGAAAGAAGTGGAGGAAA 1047
Query 1556 TGAAGCACATGACCAAGCAAGAGTTCATTGCCTCCCTCAGGAGGAAGAGTAGCGGTTTCT 1615
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1048 TGAAGCACATGACCAAGCAAGAGTTCATTGCCTCCCTGAGGAGGAAGAGTAGCGGTTTCT 1107
Query 1616 CTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAG 1675
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1108 CTAGAGGAGCTTCGATATACCGAGGTGTGACAAGGCATCATCAACAAGGACGTTGGCAAG 1167
Query 1676 CAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGCAACGGAAG 1735
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 CAAGGATTGGCCGTGTCGCCGGGAACAAAGATCTTTACCTTGGAACCTTTGCAACGGAAG 1227
Query 1736 AGGAAGCAGCTGAAGCGTATGACATAGCAGCAATCAAATTCAGAGGAATAAACGCTGTAA 1795
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1228 AGGAAGCAGCTGAAGCGTACGACATAGCAGCAATCAAGTTCAGAGGAATAAACGCTGTAA 1287
Query 1796 CTAACTTTGAGATGAACCGTTACGACGTTGAAGCCATCATGAAGAGTGCACTTCCCATCG 1855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1288 CTAACTTTGAGATGAACCGTTACGACGTTGAAGCCATCATGAAGAGTGCCCTTCCCATCG 1347
Query 1856 GTGGTGCAGCTAAACGTCTTAAGCTCTCTTTGGAAGCTGCTGCTTCATCAGAGCAGAAAC 1915
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1348 GTGGTGCAGCTAAACGTCTTAAGCTCTCTTTGGAAGCTGCT--T-CATCAGAGCAGAAAC 1404
Query 1916 CAATCCTCGGTCATCATCAACTTCACCATTTCCAGcaaca--a-caacaacaacaacaGC 1972
||||||| |||||||| | ||||||||||||||||||| | ||||||||||||||||
Sbjct 1405 CAATCCTAGGTCATCAGC---TTCACCATTTCCAGCAACAGCAGCAACAACAACAACAGC 1461
Query 1973 TTCAGCTTCAGTCATCTCCTAATCACAGTAGCATTAACTTCGCTCTCTGTCCTAATTCAG 2032
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1462 TTCAGCTTCAGTCATCTCCTAATCACAGTAGCATTAACTTTGCTCTCTGTCCTAATTCAG 1521
Query 2033 CAGTTCAGTCTCAACAGATCATTCCTTGTGGAATCCCTTTTGAAGCAGCTGCTCTTTacc 2092
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1522 CAGTTCAGTCTCAACAGATTATTCCATGTGGAATTCCTTTTGAAGCAGCTGCTCTTTACC 1581
Query 2093 accaccaccaacaacaacagcaacaccaacagcagcagcagcaacagAACTTCTTCCAGC 2152
||||||| | ||||| |||||| | |||||||| | || ||||||||||||||
Sbjct 1582 ACCACCA--A-CAACA---GCAACA--A-CAGCAGCA--A-CA---GAACTTCTTCCAGC 1626
Query 2153 ATTTTCCGGCGAATGCAGCTTCTGACTCGACCGGGTCTAACAACAACTCCAACGTTCAGG 2212
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1627 ATTTTCCCGCAAATGCAGCTTCTGACTCGACCGGGTCTAATAACAACTCCAACGTTCAGG 1686
Query 2213 GAACAATGGGACTTATGGCACCAAATCCGGCTGAGTTCTTCCTCTGGCCTAATCAGTCTT 2272
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1687 GAACAATGGGACTTATGGCGCCGAATCCGGCTGAGTTCTTCCTCTGGCCTAATCAGTCTT 1746
Query 2273 ACTAAAACCAATCATATAAGTTGATT 2298
||||||||||||||||| ||||||||
Sbjct 1747 ACTAAAACCAATCATATGAGTTGATT 1772
Score = 1297 bits (702), Expect = 0.0
Identities = 854/922 (93%), Gaps = 32/922 (3%)
Strand=Plus/Plus
Query 464 TGATGGCTCCGATGACGAACTGGTTAACGTTTTCTCTGTCACCAATGGAGATGTTGAGGT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 TGATGGCTCCGATGACGAACTGGTTAACGTTTTCTCTGTCACCAATGGAGATGTTGAGGT 78
Query 524 CATCTGATCAGTCTCAGTTTGTCTCCTATGACGCTTCTTCCGCCGCTTCCTCCTCTCCTT 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 CATCTGATCAGTCTCAGTTTGTCTCCTATGACGCTTCTTCCGCCGCTTCCTCCTCTCCTT 138
Query 584 ATCTCCTCGATAATTTCTATGGTTGGTCAAACCAAAAACCTCAGGAGTTTTTCAAAGAAG 643
|||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 139 ATCTCCTCGATAATTTCTATGGTTGGACGAACCAAAAACCACAGGAGTTTTTCAAAGAAG 198
Query 644 AAGCTCAGTTAGCAGCAGCAGCTTCAATGGCGGATTCAACAATCTTAACAACATTCGTAG 703
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 199 AAGCTCAGTTAGCAGCAGC---TTCAATGGCGGATTCAACAATCTTAACAACATTCGTAG 255
Query 704 ACCCACAATCTCATCATTCTCAGAATCACATCCCAAAGCTCGAAGATTTTCTCGGTGACT 763
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 ACCCACAATCTCAT--T-CTCAGAATCACATCCCAAAGCTCGAAGATTTTCTCGGTGACT 312
Query 764 CTTCTTCTATCGTTCGTTACTCCGACAACAGTCAAACCGACACACAAGACTCTTCCCTCA 823
|||||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||
Sbjct 313 CTTCTTCTATCGTTCGTTTCTCTGACAACAGTCAAACCGATACTCAAGACTCTTCCCTCA 372
Query 824 CTCAAATCTACGATCCACGTCACCACCA---TAACC--AA--A--CCGGCTTTTACTCCG 874
|||||||||||||||||||||||||||| ||||| || | |||| ||||||||||
Sbjct 373 CTCAAATCTACGATCCACGTCACCACCACCATAACCCCAACCAAACCGGGTTTTACTCCG 432
Query 875 ATCACCACGATTTCAAAACCATGGCCGGTTTTCAATCCGCTTTCTCTACTAACTCCGGTT 934
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 433 ATCACCACGATTTCAAAACCATGGCCGGTTTTCAAACCGCTTTCTCGACTAACTCCGGTT 492
Query 935 CAGAGGTCGATGACTCTGCTTCTATCGGAAGGACTCATCTTGCTGGAGACTATTTGGGAC 994
|||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||
Sbjct 493 CAGAGGTCGATGACTCTGCTTCAATCGGACGGACTCATCTTACTGGAGAGTATTTGGGAC 552
Query 995 ACGTGGTTGAATCTTCTGGTCCGGAGCTAGGGTTTCACGGTGGATCTACCGGAGCTTTGT 1054
|||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||
Sbjct 553 ACGTGGTTGAATCTTCCGGACCAGAGCTAGGGTTTCACGGTGGATCTACAGGAGCTTTGT 612
Query 1055 CACTTGGTGTTAACGTCAATAACAATACTAATCACCGGAATGATAATGATAATCATTACC 1114
||||||| |||||||| ||||||||| ||||||||||||||| |||||| | || |
Sbjct 613 CACTTGGGGTTAACGT---TAACAATACGAATCACCGGAATGATCATGATAGTAATCA-- 667
Query 1115 GAGG-C-AATAA-CAATGGTGAGAG-AATcaacaaca---aca-a--caacaatgacaac 1164
|| | ||| | || | ||| | ||| |||||| ||| | ||||||||| |||
Sbjct 668 GATTACTAATCATCATTACCGAG-GTAAT-AACAACGGTGACAGAATCAACAATGAGAAC 725
Query 1165 GAGAAGACAGATTCTGAGAAGGAGAAGGCTGTTGTGGCTGTGGAAACATCAGATTGTTCT 1224
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 726 GAGAAGACAGATTCTGAGAAGGAGAAAGCTGTTGTAGCTGTGGAAACATCAGATTGTTCT 785
Query 1225 AATAAGAAGATTGCTGATACGTTTGGTCAAAGGACTTCGATTTACAGAGGTGTTACTCGA 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 AATAAGAAGATTGCTGATACGTTTGGTCAAAGGACTTCGATTTACAGAGGTGTTACTCGA 845
Query 1285 CATAGATGGACGGGAAGATATGAAGCACATCTATGGGATAATAGCTGTAGGAGAGAAGGT 1344
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 846 CATAGATGGACGGGAAGATATGAAGCTCATCTATGGGATAATAGCTGTAGGAGAGAAGGT 905
Query 1345 CAGGCCAGGAAGGGACGTCAAG 1366
||||||||||||||||||||||
Sbjct 906 CAGGCCAGGAAGGGACGTCAAG 927
> Ahg918350 jgi|Araly1|918350|Al_scaffold_0008_3101
Length=1329
Score = 405 bits (219), Expect = 8e-112
Identities = 393/477 (82%), Gaps = 11/477 (2%)
Strand=Plus/Plus
Query 1436 GTGGATATGACAAAGAAGATAAG-GCAGCTCGAGCTTACGATTTAGCAGCTCTGAAATAC 1494
||||||||||||| |||||| || |||||| |||| || || || |||||| | ||||||
Sbjct 641 GTGGATATGACAAGGAAGAT-AGAGCAGCTAGAGCCTATGACTTGGCAGCTTTAAAATAC 699
Query 1495 TGGAATGCTACTGCTACCACCAATTTCCCTATTACGAATTACTCGAAAGAAGTGGAGGAA 1554
||| | |||||||||| || ||||| || | ||| ||| || |||||| | ||||||
Sbjct 700 TGGGGTCCTACTGCTACTACAAATTTTCCGGTCGCGAGTTATTCAAAAGAACTTGAGGAA 759
Query 1555 ATGAAGCACATGACCAAGCAAGAGTTCATTGCCTCCCTCAGGAGGAAGAGTAGCGGTTTC 1614
||||| ||||||||||||| |||||| ||||| || || |||||||| |||||||||||
Sbjct 760 ATGAATCACATGACCAAGCTAGAGTTTATTGCATCTCTTAGGAGGAAAAGTAGCGGTTTT 819
Query 1615 TCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAA 1674
|| ||||||||||| || || ||||||| ||||||||||| |||||||| |||||||||
Sbjct 820 TCGAGAGGAGCTTCTATGTATAGAGGTGTGACAAGGCATCACCAACAAGGTCGTTGGCAA 879
Query 1675 GCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGCAACGGAA 1734
||||| || ||||| || || || ||||||||||||||||| ||||||||||||||||||
Sbjct 880 GCAAGAATCGGCCGTGTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGCAACGGAA 939
Query 1735 GAGGAAGCAGCTGAAGCGTATGACATAGCAGCAATCAAA-TTCAGAGGAATAAACGCTGT 1793
||||||||||| || || |||||||| ||||| || ||| ||||||||||| ||||| ||
Sbjct 940 GAGGAAGCAGCAGAGGCTTATGACATTGCAGCCAT-AAAGTTCAGAGGAATCAACGCAGT 998
Query 1794 AACTAACTTTGAGATGAACCGTTACGACGTTGAAGCCATCATGAAGAGTGCACTTCCCA- 1852
|||||||||||| |||||||| || ||||| ||||| ||||||| ||| | |||||
Sbjct 999 AACTAACTTTGAAATGAACCGGTATGACGTGGAAGCTGTCATGAAAAGTTCT-TTCCCTG 1057
Query 1853 TCGGTGGTGCAGCT---AAACGTCTTAAGCTCTCT-TTGGAAGCTGCTGCTTCATCA 1905
| || || |||||| ||||| | || |||||| ||| || || || ||||||||
Sbjct 1058 TAGGAGGAGCAGCTGCGAAACGCCACAAACTCTCTCTTG-AATCTCCTTCTTCATCA 1113
> Ahg923594 jgi|Araly1|923594|scaffold_104875.1
Length=1749
Score = 268 bits (145), Expect = 1e-70
Identities = 353/451 (78%), Gaps = 24/451 (5%)
Strand=Plus/Plus
Query 1436 GTGGATATGACAAAGAAGATAAGGCAGCTC-GAGCTTACGATTTAGCAGCTCTGAAATAC 1494
|||| |||||||||||||| || ||||| | |||| || ||| |||| || || |||||
Sbjct 702 GTGGGTATGACAAAGAAGAGAAAGCAGC-CAGAGCATATGATCTAGCTGCACTTAAATAT 760
Query 1495 TGGAAT-GCTACTGCTACCACCAA-TTTCCCTATTACGAATTACTCGAAAGAAGTGGAGG 1552
||| | || || |||| ||||| ||| || || || |||||| ||| ||||| ||||
Sbjct 761 TGGGGTCCCT-CTACTACTACCAACTTT-CCGATAACTAATTACGAGAAGGAAGTAGAGG 818
Query 1553 AAATGAAGCACATGACCAAG-CAAGAGTTCATTGCCTCCCTCAGGAGGAAGAGTAGCGGT 1611
| ||||| |||||| | || |||||||| | || || | || ||||| ||||||||
Sbjct 819 AGATGAAAAACATGA-CGAGACAAGAGTTTGTGGCTTCTATAAGAAGGAAAAGTAGCGGA 877
Query 1612 TTCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGG 1671
||||| | || || ||||| || || || || ||||||||||||||||| ||| | |||
Sbjct 878 TTCTCGCGTGGTGCATCGATGTATCGTGGAGTAACAAGGCATCATCAACATGGAAGATGG 937
Query 1672 CAAGCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGG-AACCTTT-GCAA 1729
|||||||||||||||||||||||||| ||||||||||| ||| |||| ||| || |||
Sbjct 938 CAAGCAAGGATTGGCCGAGTTGCTGGAAACAAAGATCTATAC-TTGGGAACATTCAGCA- 995
Query 1730 CGGAAGAGGAAGCAGCTGAAGCGTATGACATAGCAGCAATCAAA-TT-CAGAGGAATAAA 1787
|||| || |||||||| ||||| ||||| ||||| || || ||| || | |||| ||||
Sbjct 996 CGGAGGAAGAAGCAGCAGAAGCTTATGATATAGCTGCGAT-AAAGTTTC-GAGGTCTAAA 1053
Query 1788 CGCTGTAACTAACTTTGAGATGAACCGTTACGACGTTGAA-GCCATCAT-GA-AG-AGTG 1843
||| || || ||||||||||| |||||||||||||| ||| || ||| | || || |
Sbjct 1054 CGCGGTTACAAACTTTGAGATAAACCGTTACGACGT-GAAAGCTATCCTAGAGAGCAACA 1112
Query 1844 CACTTCCCATCGG---TGGTGCAGCTAAACG 1871
||||||| || || |||||| ||||||||
Sbjct 1113 CACTTCCTATAGGAGGTGGTGCGGCTAAACG 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93130649025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5