BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10520.1
Length=1879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487885 jgi|Araly1|487885|fgenesh2_kg.6__1019__AT5G10520.1 2813 0.0
> Ahg487885 jgi|Araly1|487885|fgenesh2_kg.6__1019__AT5G10520.1
Length=1858
Score = 2813 bits (1523), Expect = 0.0
Identities = 1767/1881 (94%), Gaps = 32/1881 (2%)
Strand=Plus/Plus
Query 5 AAAGCTGACTCTTCTTCTAACTTTCTATTTCTTCCAAGAATAACAAACTTTTT-TCTCAT 63
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1 AAAGCTGACTCTTCTTCTAACTTTCTATTTCTTCCAAGAATAACTAA-TTTTTCTCTCAC 59
Query 64 AAGAAACAAAACAAGAATTCTACAAAACTTCTCATTAAACCTCTGTTTTCTTGTTTCTCT 123
||||| || ||||||| || || |||| || |||||||||||||| |||||||||||| |
Sbjct 60 AAGAATCATAACAAGATTTATATAAAAGTTTTCATTAAACCTCTG-TTTCTTGTTTCTGT 118
Query 124 TCTGCTCTGTATTTTCGATAATTCTCTCTGTTTTGTATCCTTTCTTATTTTCTGTGAATC 183
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 119 TCTGCTCTGTATTTTCGACAATTCTCTCTGTTTTGTGTCCTTTCTTATTTTCTGGGAATC 178
Query 184 TGtttttttATGGAAATTTAATTCAAAGGCTTATTAGAGgaagaaagaaagaaaaagaaa 243
|| ||||||||||||||||||||||| | |||| || ||| ||| |||| ||
Sbjct 179 TG--TTTTTATGGAAATTTAATTCAAAATCCTATT------AG-AAG-AAG--AAAG-AA 225
Query 244 aaaaaaCCCACTGGAGCTATGGCTGTTGAAGATAACAAGAACAGTGAAAGCAAAAATCAT 303
|||||| ||| ||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct 226 AAAAAA-CCATTGGAGCTATGGCTGTTGAAGAGAACAAGAACAAAGAAAGCAAAGATCAT 284
Query 304 CAAGAGGTAGAGCTTCATAGGAACGACTTAGGCCTCGAAGATTCATCATCGCCAAGAGGT 363
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 CAAGAGATAGAGCTTCATAGGAACGACTTAGGCCTCGAAGATTCATCATCGCCAAGAGGT 344
Query 364 GTTCTCGGAATGGTTTCAGATTCCGACAACAGCAGCAGTAGTTGCAGCTCTTGTTCCTCT 423
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 345 GTTCTTGGAATGGTTTCAGATTCTGACAACAGCAGCAGTAGTTGCAGCTCTTGTTCCTCT 404
Query 424 GATGATAAATCATCATCAACATCGTCACCATTTTCAAATACTACTAAAACCGTTTCGTCT 483
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 405 GATGATAAATCATCATCAACATCGTCACCATTTTCAAATACTACTAAAAACGTTTCGTCT 464
Query 484 TC-TCACCATGGTCTTCAATGGAACAAAATGATTGAATCTATCAAGAAGAAGTCCATGAG 542
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TCTTC-CCATGGTCTTCAATGGAACAAAATGATTGAATCTATCAAGAAGAAGTCCATGAG 523
Query 543 ACGATTCTCTGTCATTCCTCTTCTTGCAAGTTACGAACTCACCCGTAAAAACTTGCGTCG 602
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 524 ACGATTCTCTGTCATTCCTCTTCTTGCAAGTTATGAACTCACCCGTAAAAACTTGCGTCG 583
Query 603 TAAGCAACCTAAGCTAACTCCCTCTGAG-AGTG-CTTTCACCTGTGAAGCCTTCTTTATG 660
||||||||||||||| ||||||||||| || | |||| |||||||||||||||||||||
Sbjct 584 TAAGCAACCTAAGCTCTCTCCCTCTGAGAAG-GCCTTT-ACCTGTGAAGCCTTCTTTATG 641
Query 661 GCTAAACCCTCTTGGAGAAACTTCACTTACGAAGAGCTCGCTGTAGCCACCGATTATTTC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GCTAAACCCTCTTGGAGAAACTTCACTTACGAAGAGCTCGCTGTAGCCACCGATTATTTC 701
Query 721 AATCCTGAGAACATGATTGGTAAGGGAGGACATGCGGAGGTATACAAAGGGGTTTTGATT 780
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||
Sbjct 702 AATCCTGAGAATATGATTGGGAAGGGAGGTCATGCGGAGGTATACAAAGGGGTTTTGCTT 761
Query 781 AATGGTGAGACGGTGGCGATTAAGAAGCTGATGAGTCACGCCAAGGAAGAAGAAGAAAGA 840
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 AATGGTGAGACGGTAGCTATTAAGAAGCTGATGAGTCACGCCAAGGAAGAAGAAGAAAGA 821
Query 841 GTGAGCGATTTCCTTTCAGAGCTCGGTATAATCGCACATGTAAACCACCCAAACGCAGCT 900
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 822 GTGAGCGATTTCCTTTCAGAGCTTGGTATAATCGCACATGTAAACCACCCAAACGCAGCT 881
Query 901 AGGCTTCGCGGTTTCAGCAGTGATCGCGGTTTGCATTTTGTTCTTGAGTACGCTCCCTAT 960
|||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 882 AGGCTTCGTGGTTTCAGCAGTGATCGCGGTTTGCATTTTGTGCTTGAGTACTCTCCCTAT 941
Query 961 GGCAGCCTCGCTTCTATGCTTTTTGGATCAGAGGAATGTCTAGAGTGGAAGATAAGGTAT 1020
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 942 GGCAGCCTTGCTTCTATGCTCTTTGGATCAGAGGAATGTCTAGAGTGGAAGATAAGGTAT 1001
Query 1021 AAAGTGGCTCTAGGTATAGCTGATGGTCTGAGTTATCTTCATAATGCTTGTCCAAGAAGG 1080
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 1002 AAAGTGGCTCTAGGTATAGCTGATGGTCTGAGTTATCTTCACAATGCTTGCCCAAGACGG 1061
Query 1081 ATCATTCACCGTGACATCAAAGCTTCTAACATATTGCTCAACCACGATTACGAAGCTCAG 1140
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1062 ATCATTCACCGTGACATCAAAGCTTCTAACATATTGCTCAACCGCGATTACGAAGCTCAG 1121
Query 1141 ATTTCAGATTTCGGACTTGCAAAATGGCTCCCAGAGAACTGGCCTCACCATGTTGTATTC 1200
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1122 ATTTCAGATTTCGGACTTGCAAAATGGCTCCCAGAGAACTGGCCTCATCATGTTGTATTC 1181
Query 1201 CCCATTGAAGGAACATTCGGATATCTAGCTCCAGAGTATTTCATGCACGGCATTGTTGAT 1260
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1182 CCCATTGAAGGAACATTCGGATATCTAGCTCCAGAGTACTTCATGCACGGCATTGTTGAT 1241
Query 1261 GAGAAGATTGATGTGTTTGCCTTTGGAGTATTGCTTCTAGAGATCATAACCAGTCGCCGA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GAGAAGATTGATGTGTTTGCCTTTGGAGTATTGCTTCTAGAGATCATAACCAGTCGCCGA 1301
Query 1321 GCTGTTGATACAGCAAGCAGGCAGAGCATTGTTGCATGGGCAAAACCTTTTCTTGAGAAA 1380
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 GCTGTTGATACTGCAAGCAGGCAGAGCATTGTTGCATGGGCAAAACCTTTTCTTGAGAAG 1361
Query 1381 AATAGCATGGAGGACATTGTGGATCCTCGGCTAGGAAATATGTTTAATCCAACAGAGATG 1440
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1362 AATAGCATGGAGGACATTGTGGATCCTCGGCTAGGAAATAAGTTTAATCCAACAGAGATG 1421
Query 1441 CAACGAGTGATGCTAACAGCTTCAATGTGTGTACATCATATTGCCGCAATGCGACCTGAC 1500
||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1422 CAACGGGTGATGCTAACAGCTTCAATGTGTATACATCATATAGCCGCAATGCGACCTGAC 1481
Query 1501 ATGACTCGGTTGGTGCAGCTGTTACGTGGAGAAGACGGACCAGCTGAGCTACAGCAGAAG 1560
||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1482 ATGACCCGGTTGGTGCAGCTGTTGCGTGGAGAAGACGGGCCAGCTGAGCTGCAGCAGAAG 1541
Query 1561 GCAGGTGAAAGA-ACAATGAGCGTGAACGCTTGTGATCTACAAGATCACACCTCTTCCTC 1619
|||| |||||| | |||| || ||||| || ||||||||||||||||||||||||||
Sbjct 1542 ACAGGGGAAAGAGAGG-TGAGTGTAAACGCATGCGATCTACAAGATCACACCTCTTCCTC 1600
Query 1620 ATACCTCAACGAACTCCGCCGCCATAGGCAACTCTTAATGGAGTGAGTAGAAGCAATAAC 1679
||||||||||||||| | ||||||||||||||||| ||||||| |||||||||| |||
Sbjct 1601 GTACCTCAACGAACTCAGTCGCCATAGGCAACTCTTGATGGAGTAAGTAGAAGCAGTAAG 1660
Query 1680 ATCAACTTAAAGAACTGTTTATCAACCTCtttctttttagatttttattttcttgacttg 1739
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1661 ATCAACTTAAAGAACTGTTTATCTTCCTCTACCTTTTTAGATTTTTATTTTCTTGACTTG 1720
Query 1740 agttttgcttgttattctccattggttgctttttttt-CTTGTCCAACCAAA-CTGTGAA 1797
||||||||||| ||||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct 1721 AGTTTTGCTTGGTATTCTCCATTGGTTGCTTTTTTTTGCTTTTCCAACCAAAACTGTGAA 1780
Query 1798 TATCTTCAACTTGTGTCTCTCTGTTGCTTCTACT-GAACTTTGTTAGTCTCAACCTCTCG 1856
|||| ||||| ||||||||||||||| ||||||| ||||||||||||| |||||||| |
Sbjct 1781 TATCATCAACATGTGTCTCTCTGTTG-TTCTACTTGAACTTTGTTAGTTTCAACCTC--G 1837
Query 1857 GTA-GAGTTGTCAATTTGTTA 1876
| |||||||||||||||||
Sbjct 1838 AAAAGAGTTGTCAATTTGTTA 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581223985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5