BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10530.1 Length=1956 Score E Sequences producing significant alignments: (Bits) Value Ahg940522 jgi|Araly1|940522|scaffold_601066.1 3070 0.0 > Ahg940522 jgi|Araly1|940522|scaffold_601066.1 Length=1990 Score = 3070 bits (1662), Expect = 0.0 Identities = 1863/1960 (95%), Gaps = 14/1960 (1%) Strand=Plus/Plus Query 1 ATGGCCAACTCAATTC-TGTTATTTTCCTTTGTTTTGGTTCTCCCTTTTGTCTGTTCAGT 59 ||||||||| | | || |||| |||||||||| ||||||||||||| ||||||||||||| Sbjct 21 ATGGCCAAC-CCAGTCTTGTTCTTTTCCTTTGCTTTGGTTCTCCCTGTTGTCTGTTCAGT 79 Query 60 TCAATTTAACATATCTCGTTTTGGATCAGATGTTTCTGAAATAGCATACCAAGGAGATGC 119 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 80 TCAATTTAACATATCTCGTTTTGGGTCAGATGTTTCTGAAATAGCATACCAAGGAGATGC 139 Query 120 AAGAGCAAATGGGGCTGTTGAGCTTACCAACATTGACTACACATGCCGTGCCGGTTGGGC 179 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 140 AAGAGCAAATGGGGCTGTTGAGCTTACCAACAGTGACTACACATGCCGTGCCGGTTGGGC 199 Query 180 TACTTATGGTAAGCAGGTTCCTTTATGGAATCCAGGTACCAGTAAGCCTTCGGATTTTAG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 200 TACTTATGGTAAGCAGGTTCCTTTATGGAATCCAGGTACCAGTAAGCCTTCGGATTTTAG 259 Query 240 TACGCGTTTCTCCTTCAGAATTGATACCCGTAATGTTGGGTATGGTAATTACGGTCATGG 299 ||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| Sbjct 260 TACGCGTTTCTCCTTCAGAATTGATACTCGGAATGTTGGGTATGGCAATTACGGTCATGG 319 Query 300 GTTTGCTTTCTTTCTAGCTCCAGCGAGAATCCAATTGCCTCCCAACTCAGCTGGTGGTTT 359 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 GTTCGCTTTCTTTCTAGCTCCAGCGAGAATCCAATTGCCTCCCAACTCAGCTGGTGGTTT 379 Query 360 CTTGGGTCTATTCAATGGAACCAATAATCAGTCTTCTGCTTTCCCACTTGTTTATGTCGA 419 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 380 CTTGGGTCTATTCAATGGAACCAATGATCAGTCTTCTGCTTTCCCACTTGTTCATGTCGA 439 Query 420 GTTCGACACATTTACTAATCCAGAATGGGATCCTCTCGATGTCAAATCCCATGTAGGAAT 479 |||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| Sbjct 440 ATTCGACACATTTACTAATCCAGAATGGGATCCTCTCGACATCAAATCTCATGTGGGAAT 499 Query 480 CAACAACAACTCTCTTGTTTCTTCTAACTACACTTCTTGGAATGCAACGTCACACAACCA 539 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 500 CAACAACAACTCTCTTGTTTCCTCTAACTACACTTCTTGGAATGCAACCTCACACAACCA 559 Query 540 AGATATAGGCCGTGTCCTGATATTCTATGATTCCGCTAGAAGAAACTTGAGTGTCTCTTG 599 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 560 AGATATAGGCCGTGTACTGATCTTCTATGATTCGGCTAGAAGAAACTTGAGTGTCTCTTG 619 Query 600 GACTTACGACTTAACATCTGATCCTCTGGAGAATTCAAGCCTATCTTACATCATTGATCT 659 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 620 GACTTACGACTTAACATCTGATCCTCTGGAGAATCCAAGCCTATCTTACATCATTGATCT 679 Query 660 CTCAAAGGTACTGCCATCAGAAGTTACAATTGGGTTTTCTGCGACATCTGGAGGGGTCAC 719 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 680 CTCAAAGATACTGCCATCAGAAGTTACAATCGGGTTTTCTGCGACATCTGGAGGGGTCAC 739 Query 720 CGAGGGAAATAGACTTCTGTCATGGGAGTTCAGTTCAAGCCTGGAGCTAATAGATATAAA 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 740 CGAGGGAAATAGACTTCTGTCATGGGAGTTCAGTTCAAGCCTGGAGCTAATAGATATAAA 799 Query 780 GAAAAGTCAGAATGACAAGAAGGGGATGATAATTGGTATTTCAGTTTCTGGGTTCGTTTT 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 800 GAAAAGTCAGAATGACAAGAAGGGGATGATAATTGGTATTTCAGTTTCTGGGTTTGTTTT 859 Query 840 GCTGACCTTTTTTATTACCTCGCTCATCGTCTTCTTGAAACGGAAGCAGCAGAAGAAGAA 899 ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 860 CCTGACCTTTTTTATTGCCTCTCTCATCGTCTTCTTGAAACGGAAGCAGCAGAAGAAGAA 919 Query 900 AGCAGAGGAGACAGAAAACTTAACATCGATAAATGAAGATCTCGAAAGAGGAGCAGGACC 959 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 920 AGCAGAGGAGACAGAAAACTTAACATCGATAAATGAAGATCTTGAAAGAGGAGCAGGACC 979 Query 960 -AAGAAAGTTTACTTATAAAGATCTTGCATCAGCTGCAAACAATTTCGCAGATGATAGGA 1018 || |||||||||||||||||| |||||||||||||| || || |||||||||||||||| Sbjct 980 GAA-AAAGTTTACTTATAAAGAGCTTGCATCAGCTGCTAATAACTTCGCAGATGATAGGA 1038 Query 1019 AGCTAGGGGAAGGAGGGTTTGGAGCGGTTTATAGAGGGTACTTAAACAGCTTAGATATGA 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1039 AGCTAGGGGAAGGAGGGTTTGGAGCGGTTTATAGAGGGTACTTAAACAGCTTAGATATGA 1098 Query 1079 TGGTTGCGATAAAGAAGTTTGCGGGTGGGTCTAAGCAGGGAAAAAGAGAGTTCGTAACCG 1138 ||||||| |||||||||||||| || ||||| ||||||||||| |||||||||||||| | Sbjct 1099 TGGTTGCAATAAAGAAGTTTGCTGGCGGGTCAAAGCAGGGAAAGAGAGAGTTCGTAACTG 1158 Query 1139 AAGTAAAGATAATCAGCAGTTTGAGACATCGAAACCTTGTGCAACTCATTGGTTGGTGCC 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1159 AAGTAAAGATAATCAGCAGTTTGAGACATCGAAACCTTGTGCAACTCATTGGTTGGTGCC 1218 Query 1199 ATGAGAAAGATGAGTTTCTAATGATATACGAGTTCATGCCAAATGGTAGCCTTGACGCCC 1258 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1219 ATGAGAAAGATGAGTTTCTAATGATATACGAGTTCATGCCAAATGGTAGTCTCGACGCCC 1278 Query 1259 ATCTATTTGGTAAAAAGCCGCATCTCGCTTGGCATGTGAGATGCAAAATAACTCTCGGTC 1318 |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 1279 ATCTTTTTGGTAAAAAGCCGCATCTCGCTTGGCCTGTGAGATGCAAAATAACTCTTGGTA 1338 Query 1319 TCGCCTCTGCACTGCTTTATCTTCACGAGGAGTGGGAGCAGTGTGTTGTACACAGAGACA 1378 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1339 TCGCCTCTGCGCTGCTTTATCTTCACGAGGAGTGGGAGCAGTGTGTTGTGCACAGAGACA 1398 Query 1379 TCAAGGCGAGTAATGTGATGCTCGACTCCAATTTCAATGCCAAGCTTGGTGATTTCGGGT 1438 ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1399 TCAAGCCGAGTAATGTGATGCTGGATTCCAATTTCAATGCCAAGCTTGGTGATTTCGGGT 1458 Query 1439 TGGCTAGATTGATGGACCACGAGCTAGGTCCACAGACTACAGGGTTAGCAGGAACATTTG 1498 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 1459 TGGCTAGATTGATGGACCACGAGCTAGGTCCACAGACTACGGGGATAGCAGGAACATTTG 1518 Query 1499 GTTACATGGCTCCTGAATACATAAGCACCGGAAGGGCGAGCAAAGAATCTGATGTGTATA 1558 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1519 GTTACATGGCTCCTGAATACATAAGCACCGGAAGGGCGAGCAAAGAATCTGATGTTTATA 1578 Query 1559 GCTTTGGAGTGGTTACATTAGAGATTGTTACAGGAAGAAAATCTGTGGATCGAAGACAAG 1618 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1579 GCTTTGGAGTGGTTACATTAGAGATTGTTACAGGAAGAAAATCTGTGGATCCAAGACAAG 1638 Query 1619 GAAGAGTAGAGCCTGTAACAAACCTTGTAGAGAAAATGTGGGACCTTTATGGAAAAGGAG 1678 ||||||| ||||||| ||||| |||| |||||||| ||||||| || ||||||||||||| Sbjct 1639 GAAGAGTGGAGCCTGAAACAAGCCTTTTAGAGAAAGTGTGGGATCTCTATGGAAAAGGAG 1698 Query 1679 AAGTTATTACAGCTATCGACGAGAAACTCAGGATCGGTGGTTTCGATGAGAAACAAGCAG 1738 ||||||| ||||| |||||||||||||||||||| | |||||| |||||||| ||||||| Sbjct 1699 AAGTTATCACAGCAATCGACGAGAAACTCAGGATTGATGGTTTTGATGAGAAGCAAGCAG 1758 Query 1739 AATGTCTCATGATTGTA-GGATTATGGTGTGCTCATCCTGAT-GTAAACACGAGGCCTTC 1796 ||||||||||||||||| || | ||||||||||||||||||| | |||| |||||||||| Sbjct 1759 AATGTCTCATGATTGTAAGGCT-ATGGTGTGCTCATCCTGATAG-AAACTCGAGGCCTTC 1816 Query 1797 AATAAAACAAGCAATCCAAGTCTTGAATCTTGAAGCACCAGTGCCTCATCTTCCGACCAA 1856 ||||||||||| ||||||||||||||| |||||||| || ||||||||||||||||||| Sbjct 1817 GATAAAACAAGCGATCCAAGTCTTGAATTTTGAAGCAGCATTGCCTCATCTTCCGACCAA 1876 Query 1857 AATGCCTGTCGCAACATATCATGTATCCTCTTCGAATACTACATCGGTAAGCTCTGGTGG 1916 ||||||||| || |||||||||||||| |||||||||||||||||||| ||||||| | Sbjct 1877 AATGCCTGTTGCTACATATCATGTATCATCTTCGAATACTACATCGGTTAGCTCTGCT-- 1934 Query 1917 AGCTACGGTAACGTTTTCAAGTGCTCAACATGGTCGTTGA 1956 | || | |||| |||||||||||||||||||| |||||| Sbjct 1935 A-CT--G-TAACATTTTCAAGTGCTCAACATGGCCGTTGA 1970 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73514172850 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5