BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10530.1
Length=1956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940522 jgi|Araly1|940522|scaffold_601066.1 3070 0.0
> Ahg940522 jgi|Araly1|940522|scaffold_601066.1
Length=1990
Score = 3070 bits (1662), Expect = 0.0
Identities = 1863/1960 (95%), Gaps = 14/1960 (1%)
Strand=Plus/Plus
Query 1 ATGGCCAACTCAATTC-TGTTATTTTCCTTTGTTTTGGTTCTCCCTTTTGTCTGTTCAGT 59
||||||||| | | || |||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 21 ATGGCCAAC-CCAGTCTTGTTCTTTTCCTTTGCTTTGGTTCTCCCTGTTGTCTGTTCAGT 79
Query 60 TCAATTTAACATATCTCGTTTTGGATCAGATGTTTCTGAAATAGCATACCAAGGAGATGC 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 80 TCAATTTAACATATCTCGTTTTGGGTCAGATGTTTCTGAAATAGCATACCAAGGAGATGC 139
Query 120 AAGAGCAAATGGGGCTGTTGAGCTTACCAACATTGACTACACATGCCGTGCCGGTTGGGC 179
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 140 AAGAGCAAATGGGGCTGTTGAGCTTACCAACAGTGACTACACATGCCGTGCCGGTTGGGC 199
Query 180 TACTTATGGTAAGCAGGTTCCTTTATGGAATCCAGGTACCAGTAAGCCTTCGGATTTTAG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TACTTATGGTAAGCAGGTTCCTTTATGGAATCCAGGTACCAGTAAGCCTTCGGATTTTAG 259
Query 240 TACGCGTTTCTCCTTCAGAATTGATACCCGTAATGTTGGGTATGGTAATTACGGTCATGG 299
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 260 TACGCGTTTCTCCTTCAGAATTGATACTCGGAATGTTGGGTATGGCAATTACGGTCATGG 319
Query 300 GTTTGCTTTCTTTCTAGCTCCAGCGAGAATCCAATTGCCTCCCAACTCAGCTGGTGGTTT 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GTTCGCTTTCTTTCTAGCTCCAGCGAGAATCCAATTGCCTCCCAACTCAGCTGGTGGTTT 379
Query 360 CTTGGGTCTATTCAATGGAACCAATAATCAGTCTTCTGCTTTCCCACTTGTTTATGTCGA 419
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 380 CTTGGGTCTATTCAATGGAACCAATGATCAGTCTTCTGCTTTCCCACTTGTTCATGTCGA 439
Query 420 GTTCGACACATTTACTAATCCAGAATGGGATCCTCTCGATGTCAAATCCCATGTAGGAAT 479
|||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 440 ATTCGACACATTTACTAATCCAGAATGGGATCCTCTCGACATCAAATCTCATGTGGGAAT 499
Query 480 CAACAACAACTCTCTTGTTTCTTCTAACTACACTTCTTGGAATGCAACGTCACACAACCA 539
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 500 CAACAACAACTCTCTTGTTTCCTCTAACTACACTTCTTGGAATGCAACCTCACACAACCA 559
Query 540 AGATATAGGCCGTGTCCTGATATTCTATGATTCCGCTAGAAGAAACTTGAGTGTCTCTTG 599
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 560 AGATATAGGCCGTGTACTGATCTTCTATGATTCGGCTAGAAGAAACTTGAGTGTCTCTTG 619
Query 600 GACTTACGACTTAACATCTGATCCTCTGGAGAATTCAAGCCTATCTTACATCATTGATCT 659
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 620 GACTTACGACTTAACATCTGATCCTCTGGAGAATCCAAGCCTATCTTACATCATTGATCT 679
Query 660 CTCAAAGGTACTGCCATCAGAAGTTACAATTGGGTTTTCTGCGACATCTGGAGGGGTCAC 719
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 680 CTCAAAGATACTGCCATCAGAAGTTACAATCGGGTTTTCTGCGACATCTGGAGGGGTCAC 739
Query 720 CGAGGGAAATAGACTTCTGTCATGGGAGTTCAGTTCAAGCCTGGAGCTAATAGATATAAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CGAGGGAAATAGACTTCTGTCATGGGAGTTCAGTTCAAGCCTGGAGCTAATAGATATAAA 799
Query 780 GAAAAGTCAGAATGACAAGAAGGGGATGATAATTGGTATTTCAGTTTCTGGGTTCGTTTT 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 800 GAAAAGTCAGAATGACAAGAAGGGGATGATAATTGGTATTTCAGTTTCTGGGTTTGTTTT 859
Query 840 GCTGACCTTTTTTATTACCTCGCTCATCGTCTTCTTGAAACGGAAGCAGCAGAAGAAGAA 899
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 860 CCTGACCTTTTTTATTGCCTCTCTCATCGTCTTCTTGAAACGGAAGCAGCAGAAGAAGAA 919
Query 900 AGCAGAGGAGACAGAAAACTTAACATCGATAAATGAAGATCTCGAAAGAGGAGCAGGACC 959
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 920 AGCAGAGGAGACAGAAAACTTAACATCGATAAATGAAGATCTTGAAAGAGGAGCAGGACC 979
Query 960 -AAGAAAGTTTACTTATAAAGATCTTGCATCAGCTGCAAACAATTTCGCAGATGATAGGA 1018
|| |||||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct 980 GAA-AAAGTTTACTTATAAAGAGCTTGCATCAGCTGCTAATAACTTCGCAGATGATAGGA 1038
Query 1019 AGCTAGGGGAAGGAGGGTTTGGAGCGGTTTATAGAGGGTACTTAAACAGCTTAGATATGA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 AGCTAGGGGAAGGAGGGTTTGGAGCGGTTTATAGAGGGTACTTAAACAGCTTAGATATGA 1098
Query 1079 TGGTTGCGATAAAGAAGTTTGCGGGTGGGTCTAAGCAGGGAAAAAGAGAGTTCGTAACCG 1138
||||||| |||||||||||||| || ||||| ||||||||||| |||||||||||||| |
Sbjct 1099 TGGTTGCAATAAAGAAGTTTGCTGGCGGGTCAAAGCAGGGAAAGAGAGAGTTCGTAACTG 1158
Query 1139 AAGTAAAGATAATCAGCAGTTTGAGACATCGAAACCTTGTGCAACTCATTGGTTGGTGCC 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 AAGTAAAGATAATCAGCAGTTTGAGACATCGAAACCTTGTGCAACTCATTGGTTGGTGCC 1218
Query 1199 ATGAGAAAGATGAGTTTCTAATGATATACGAGTTCATGCCAAATGGTAGCCTTGACGCCC 1258
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1219 ATGAGAAAGATGAGTTTCTAATGATATACGAGTTCATGCCAAATGGTAGTCTCGACGCCC 1278
Query 1259 ATCTATTTGGTAAAAAGCCGCATCTCGCTTGGCATGTGAGATGCAAAATAACTCTCGGTC 1318
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1279 ATCTTTTTGGTAAAAAGCCGCATCTCGCTTGGCCTGTGAGATGCAAAATAACTCTTGGTA 1338
Query 1319 TCGCCTCTGCACTGCTTTATCTTCACGAGGAGTGGGAGCAGTGTGTTGTACACAGAGACA 1378
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1339 TCGCCTCTGCGCTGCTTTATCTTCACGAGGAGTGGGAGCAGTGTGTTGTGCACAGAGACA 1398
Query 1379 TCAAGGCGAGTAATGTGATGCTCGACTCCAATTTCAATGCCAAGCTTGGTGATTTCGGGT 1438
||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1399 TCAAGCCGAGTAATGTGATGCTGGATTCCAATTTCAATGCCAAGCTTGGTGATTTCGGGT 1458
Query 1439 TGGCTAGATTGATGGACCACGAGCTAGGTCCACAGACTACAGGGTTAGCAGGAACATTTG 1498
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1459 TGGCTAGATTGATGGACCACGAGCTAGGTCCACAGACTACGGGGATAGCAGGAACATTTG 1518
Query 1499 GTTACATGGCTCCTGAATACATAAGCACCGGAAGGGCGAGCAAAGAATCTGATGTGTATA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1519 GTTACATGGCTCCTGAATACATAAGCACCGGAAGGGCGAGCAAAGAATCTGATGTTTATA 1578
Query 1559 GCTTTGGAGTGGTTACATTAGAGATTGTTACAGGAAGAAAATCTGTGGATCGAAGACAAG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1579 GCTTTGGAGTGGTTACATTAGAGATTGTTACAGGAAGAAAATCTGTGGATCCAAGACAAG 1638
Query 1619 GAAGAGTAGAGCCTGTAACAAACCTTGTAGAGAAAATGTGGGACCTTTATGGAAAAGGAG 1678
||||||| ||||||| ||||| |||| |||||||| ||||||| || |||||||||||||
Sbjct 1639 GAAGAGTGGAGCCTGAAACAAGCCTTTTAGAGAAAGTGTGGGATCTCTATGGAAAAGGAG 1698
Query 1679 AAGTTATTACAGCTATCGACGAGAAACTCAGGATCGGTGGTTTCGATGAGAAACAAGCAG 1738
||||||| ||||| |||||||||||||||||||| | |||||| |||||||| |||||||
Sbjct 1699 AAGTTATCACAGCAATCGACGAGAAACTCAGGATTGATGGTTTTGATGAGAAGCAAGCAG 1758
Query 1739 AATGTCTCATGATTGTA-GGATTATGGTGTGCTCATCCTGAT-GTAAACACGAGGCCTTC 1796
||||||||||||||||| || | ||||||||||||||||||| | |||| ||||||||||
Sbjct 1759 AATGTCTCATGATTGTAAGGCT-ATGGTGTGCTCATCCTGATAG-AAACTCGAGGCCTTC 1816
Query 1797 AATAAAACAAGCAATCCAAGTCTTGAATCTTGAAGCACCAGTGCCTCATCTTCCGACCAA 1856
||||||||||| ||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 1817 GATAAAACAAGCGATCCAAGTCTTGAATTTTGAAGCAGCATTGCCTCATCTTCCGACCAA 1876
Query 1857 AATGCCTGTCGCAACATATCATGTATCCTCTTCGAATACTACATCGGTAAGCTCTGGTGG 1916
||||||||| || |||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 1877 AATGCCTGTTGCTACATATCATGTATCATCTTCGAATACTACATCGGTTAGCTCTGCT-- 1934
Query 1917 AGCTACGGTAACGTTTTCAAGTGCTCAACATGGTCGTTGA 1956
| || | |||| |||||||||||||||||||| ||||||
Sbjct 1935 A-CT--G-TAACATTTTCAAGTGCTCAACATGGCCGTTGA 1970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73514172850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5