BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10570.1
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487890 jgi|Araly1|487890|fgenesh2_kg.6__1024__AT5G10570.1 1399 0.0
> Ahg487890 jgi|Araly1|487890|fgenesh2_kg.6__1024__AT5G10570.1
Length=1013
Score = 1399 bits (757), Expect = 0.0
Identities = 901/969 (93%), Gaps = 15/969 (2%)
Strand=Plus/Plus
Query 1 ATGGAAACGGAATTGACGCAATTGAGAAAACAAGAAAGCAACAATCTCAACGGCGTTAAT 60
||||||| |||| |||| | || || |||||||||||||||||||||| ||| | |||||
Sbjct 1 ATGGAAATGGAACTGACTCGATCGACAAAACAAGAAAGCAACAATCTCGACGTCATTAAT 60
Query 61 GGAGGATTCATGGCGATTGACCAATTCGTCCCAAATGATTGGAACTTCGATTACCTCTGT 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 61 GGAGGATTCATGGCGGTTGACCAATTCGTCCCAAATGATTGGAACTTCGATTACCACTAT 120
Query 121 TTCAACAATCTTCTCCAAGAAGACGACAACATTGATCATCCTTCTTCTTCTTCTTTGATG 180
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 121 TTCAACAATCTTCTCCAAGAAGACGACAACATTGATCAT-C--CTTCTTCTTCTTTGATG 177
Query 181 AATCTAATTTCTCAGCCACCTCCATTGCTTCATCAACCACCACAACCGTCGTCACCTCTT 240
|||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 178 AATCTAATCTCTCAGCCGCCTCCATTACTTCACCAACCACCACAACCGTCGTCACCTC-C 236
Query 241 TATGATTCTCCGCCGCTCTCCTCCGCTTTCGACTATCCTTTTCTCGAGGATATCATACAC 300
| | |||||| |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 237 T-T-ATTCTCTGCCGCTCTCCTCCGCTTTCGACTATCCTTTTCTCGAGGATATCAAAGAC 294
Query 301 TCCTCTTAT-TCTCCTCCTCCATTGATCCTTCCGGCTTCGCAAGAGAAC-AC--CAACAA 356
||||| | | |||| ||||||||| || |||||| |||| ||||||||| || ||||||
Sbjct 295 TCCTC-TCTCTCTCATCCTCCATTTATTCTTCCGACTTCACAAGAGAACAACATCAACAA 353
Query 357 TTACTCACCATTGATGGAGGAAAGCAAGAGCTTCAT-AAGCAT-CGGAGAGACTAACAAG 414
||||||||||| ||||||||||||||||||| |||| || | | ||||||||||||||||
Sbjct 354 TTACTCACCATCGATGGAGGAAAGCAAGAGCCTCATGAA-C-TACGGAGAGACTAACAAG 411
Query 415 AAAAGGAGTAACAAGAAGCTTGAAGGTCAGCCTTCGAAGAATCTTATGGCGGAGAGACGG 474
|||| |||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 412 AAAAAGAGTAATAAGAAGCTTGAAGGTCAACCTTCGAAGAATCTCATGGCAGAGAGACGG 471
Query 475 CGGAGGAAACGGTTAAATGACCGACTCTCCCTGCTCCGATCCATTGTCCCTAAAATCACC 534
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 472 CGGAGGAAACGGTTAAATGACCGACTCTCTATGCTCCGATCCATTGTCCCTAAAATCACC 531
Query 535 AAGATGGATAGGACATCGATACTAGGAGATGCAATAGATTACATGAAGGAGCTTTTGGAC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AAGATGGATAGGACATCGATACTAGGAGATGCAATAGATTACATGAAGGAGCTTTTGGAC 591
Query 595 AAGATTAACAAGTTGCAAGAAGACGAACAAGAACTTGGAAGCAACTCTCATCTAAGCACC 654
|||||||||||||||||||| | ||||||| || ||||||||||||| ||||||| | |
Sbjct 592 AAGATTAACAAGTTGCAAGATGCCGAACAAAAATTTGGAAGCAACTCCCATCTAAATAAC 651
Query 655 CTCATTACAAACGAATCTATGGTCAGAAACTCCCTAAAGTTTGAAGTAGATCAAAGGGAA 714
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CTCATTACAAACAAATCTATGGTCAGAAACTCCCTAAAGTTTGAAGTAGATCAAAGGGAA 711
Query 715 GTTAATACGCATATTGATATATGTTGTCCTACGAAACCGGGTTTGGTTGTATCAACGGTT 774
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 712 GTTAATACACATATTGATATATGTTGTCCTACGAAACCGGGTTTGGTTCTATCAACGGTT 771
Query 775 AGTACATTGGAGACTCTAGGATTAGAGATTGAACAATGTGTCATTAGCTGCTTCAGTGAC 834
||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 772 AGTACATTGGAGAATCTAGGCTTAGAGATTCAACAATGTGTCATTAGCTGCTTCAGTGAC 831
Query 835 TTCTCATTGCAGGCTTCTTGTTTTGAGGTTGGTGAGCAGAGATACATGGTTACTTCGGAA 894
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 832 TTCTCATTGCAGGCTTCTTGTTTTGAGGTTGGTGGGCAGAGAGACATGGTTACTTCGGCA 891
Query 895 GCTACTAAACAAGCACTAATCAGAAACGCAGGTTATGGAGGAAGATGTCTGTAGGGGAGC 954
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GATACTAAACAAGCACTAATCAGAAACGCAGGTTATGGAGGAAGATGTCTGTAGGGGAGC 951
Query 955 TTCAAAATT 963
|||||||||
Sbjct 952 TTCAAAATT 960
Score = 93.5 bits (50), Expect = 3e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 988 ATTTTCCGGTTCTTCTTATTCTCTTGTGATGAGTATGATATTTCATAAGGAGATAG 1043
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 958 ATTTTCCGGTTCTTTTTATTCTCTTGTGATGAGTATGATATTTCTTAAGGAGATAG 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39571587846
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5