BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10580.1
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487891 jgi|Araly1|487891|fgenesh2_kg.6__1025__AT5G10580.1 1463 0.0
> Ahg487891 jgi|Araly1|487891|fgenesh2_kg.6__1025__AT5G10580.1
Length=870
Score = 1463 bits (792), Expect = 0.0
Identities = 838/861 (97%), Gaps = 0/861 (0%)
Strand=Plus/Plus
Query 47 AAGAAAGAAAGAGAAGATTATATACATAGAAAAGGAGAGATCAAATGGAGTGGGAGAAAT 106
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 10 AAGAAAGAAAGAGAAGATTATATACATAGAAAAAGAGAGATCAAATGGAGTGGGAGAAAT 69
Query 107 GGTACTTAGATGCGGTTCTTGTGCCAAGTGCTTTACTTATGATGTTTGGTTACCACATCT 166
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 70 GGTACTTAGATGCGGTTCTTGTGCCATGTGCTCTACTTATGATGTTTAGTTACCACATCT 129
Query 167 ATTTGTGGTATAAGGTTCGAACCGATCCTTTCTGCACCATTGTTGGTACAAATTCCCGCG 226
| |||||||||||||||| ||||||||||||||||||||| || || || ||||||||||
Sbjct 130 ACTTGTGGTATAAGGTTCAAACCGATCCTTTCTGCACCATCGTCGGGACTAATTCCCGCG 189
Query 227 CCCGTCGATCTTGGGTAGCAGCCATCATGAAGGACAACGAGAAGAAGAACATCTTAGCGG 286
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 190 CCCGTCGATCTTGGGTAGCCGCCATCATGAAGGATAACGAGAAGAAGAACATCTTAGCGG 249
Query 287 TACAAACACTACGAAACACGATAATGGGAGGGACGTTAATGGCAACCACTTGCATCCTCC 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TACAAACACTACGAAACACGATAATGGGAGGGACGTTAATGGCAACCACTTGCATCCTCC 309
Query 347 TCTGCGCAGGTCTCGCTGCCGTTTTAAGCAGTACTTATAGCATCAAGAAACCTTTAAACG 406
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 TCTGCGCAGGCCTCGCTGCCGTTTTAAGCAGTACTTATAGCATCAAGAAACCTTTAAACG 369
Query 407 ACGCCGTATATGGAGCTCATGGTGACTTCACTGTTGCACTCAAATACGTAACCATCCTCA 466
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 370 ACGCCGTATACGGAGCTCATGGTGACTTCACTGTCGCACTCAAATACGTAACCATCCTCA 429
Query 467 CAATCTTCCTCTTCGCCTTCTTCTCTCATTCTCTCTCCATTCGCTTCATCAACCAAGTCA 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CAATCTTCCTCTTCGCCTTCTTCTCTCATTCTCTCTCCATTCGCTTCATCAACCAAGTCA 489
Query 527 ACATCCTTATTAACGCTCCTCAAGAACCTTTTTCTGATGATTTCGGCGAAATAGGAAGCT 586
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 490 ACATCCTTATTAACGCTCCTCAAGAACCTTTTTCTGATGGTTTCGGCGAAATTGGAAGCT 549
Query 587 TTGTGACTCCCGAGTATGTCTCTGAACTACTCGAGAAAGCTTTCTTGCTCAATACGGTAG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TTGTGACTCCCGAGTATGTCTCTGAACTACTCGAGAAAGCTTTCTTGCTCAATACGGTAG 609
Query 647 GTAATAGGCTGTTCTACATGGGCTTGCCTTTGATGCTATGGATCTTTGGGCCTGTGCTTG 706
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 610 GTAATAGGCTGTTCTACATGGGCTTGCCTTTGATGCTGTGGATCTTTGGGCCTGTGCTTG 669
Query 707 TGTTCTTGAGCTCTGCTTTGATAATCCCTGTTCTTTATAACCTCGACTTCGTGTTTTTGT 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TGTTCTTGAGCTCTGCTTTGATAATCCCTGTTCTTTATAACCTCGACTTCGTGTTTTTGT 729
Query 767 TGAGCAATAAGGAGAAGGGTAAAGTCGATTGCAATGGAGGTTGTGATGACAACTTCTCGC 826
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 TGAGCAATAAGGAGAAGAGTAAAGTCGATTGCAATGGAGGTTGTGATGACAACTTCTCGC 789
Query 827 CTTAATTATCTGTTGATGTTGAATTCGAATAATGATAAAGCTGTTTGTTATTACTGATTT 886
||| |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||
Sbjct 790 CTTGATTATCTGTTGATGTTTAATTCGAGTAATGATAAAGATGTTTGTTATTACTGATTT 849
Query 887 ACTAGTCTAAAAAGTCTTTCG 907
|||||||||||||||||||||
Sbjct 850 ACTAGTCTAAAAAGTCTTTCG 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33662535711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5