BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G10590.1

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487893 jgi|Araly1|487893|fgenesh2_kg.6__1027__AT5G10590.1         381    1e-105


> Ahg487893 jgi|Araly1|487893|fgenesh2_kg.6__1027__AT5G10590.1
Length=249

 Score =  381 bits (206),  Expect = 1e-105
 Identities = 227/237 (96%), Gaps = 1/237 (0%)
 Strand=Plus/Plus

Query  8    CTATTTCAGATGTTCAAATTCACTGGCGCAAAAAAGATTACTTATCGATGAGCTTGTTGG  67
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  11   CTATTTCAGATGTTCAAATTCACTGGCGCAAAAAAGATTACTTATCGATGAGCTTGTTGG  70

Query  68   ATGATTTTGGTATTGCAGAGACTACGGTTAAGGAACATAGCGTAAACGATCAAATAATTG  127
            | ||||||| ||| |||||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct  71   AAGATTTTGATATAGCAGAGTCTAAGGTAAAGGAACATAGCGTAAACGATCAAATAATTG  130

Query  128  TCACACTCTCAGCAGATCATCGCGTAAGAATGATTATCCGTTATGAAATGGATGAATCGC  187
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  131  TCACACTCTCAGCAGATCATCGCGTAAGAATGATTATCCGTTATAAAATGGATGAATCGC  190

Query  188  ATATACCAATGATCAAAAACTTGGTGATCCGCGCTTTCTTCATTGG-ATCCCAATAA  243
            |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||
Sbjct  191  ATATACCAATGATCAAAAACTTGGTGATCCGCGCTTTCGTCATTGGCATCCAAATAA  247



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8401417420


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5